Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g02580 Fragaria vesca HOM05D003622 ORTHO05D004453 0.0e+00 1602.0 832 100.0
FAN19G0217 Fragaria x ananassa HOM05D003622 ORTHO05D004453 0.0e+00 1595.9 832 99.6
FAN28G0611 Fragaria x ananassa HOM05D003622 ORTHO05D004453 0.0e+00 1577.4 832 98.6
FAN23G2517 Fragaria x ananassa HOM05D003622 ORTHO05D004453 0.0e+00 1575.1 832 98.6
RcHm_v2.0_Chr2g0087611 Rosa chinensis HOM05D003622 ORTHO05D004453 0.0e+00 1477.2 812 94.2
FAN26G1654 Fragaria x ananassa HOM05D003622 ORTHO05D004453 0.0e+00 1434.5 917 84.6
Prupe.7G248800 Prunus persica HOM05D003622 ORTHO05D004453 0.0e+00 1313.9 839 82.2
MD15G1166400 Malus domestica HOM05D003622 ORTHO05D004453 0.0e+00 1280.4 832 80.6
MD02G1023300 Malus domestica HOM05D003622 ORTHO05D004453 0.0e+00 1276.2 830 80.2
Cfa003424 Carpinus fangiana HOM05D003622 ORTHO05D004453 1.8e-303 1045.8 836 66.7
CANSAT11G0379 Cannabis sativa HOM05D003622 ORTHO05D004453 1.4e-297 1026.2 846 66.2
CiPaw.03G248700 Carya illinoinensis HOM05D003622 ORTHO05D004453 3.2e-289 998.4 856 63.1
QL02p089888 Quercus lobata HOM05D003622 ORTHO05D004453 1.3e-282 976.5 980 56.6
Duzib168G1318 Durio zibethinus HOM05D003622 ORTHO05D004453 8.5e-282 973.8 853 62.8
Glyma.17G111200 Glycine max HOM05D003622 ORTHO05D004453 1.1e-281 973.4 852 62.4
Thecc.09G132400 Theobroma cacao HOM05D003622 ORTHO05D004453 6.1e-280 967.6 853 63.2
VMungo1215G2226 Vigna mungo HOM05D003622 ORTHO05D004453 3.9e-279 964.9 853 62.1
COL.COLO4_35161 Corchorus olitorius HOM05D003622 ORTHO05D004453 2.5e-278 962.2 857 62.4
CiPaw.04G174900 Carya illinoinensis HOM05D003622 ORTHO05D004453 9.7e-278 960.3 828 63.2
Glyma.13G160300 Glycine max HOM05D003622 ORTHO05D004453 1.3e-277 959.9 855 61.9
Potri.018G126100 Populus trichocarpa HOM05D003622 ORTHO05D004453 1.7e-277 959.5 864 61.2
Gorai.010G061100 Gossypium raimondii HOM05D003622 ORTHO05D004453 3.7e-277 958.4 854 62.8
Phvul.003G169000 Phaseolus vulgaris HOM05D003622 ORTHO05D004453 9.1e-276 953.7 853 61.8
Gorai.013G235300 Gossypium raimondii HOM05D003622 ORTHO05D004453 7.7e-275 950.7 857 61.4
Gohir.D06G052700 Gossypium hirsutum HOM05D003622 ORTHO05D004453 1.3e-274 949.9 854 62.4
Manes.06G047000 Manihot esculenta HOM05D003622 ORTHO05D004453 8.5e-274 947.2 867 60.1
arahy.Tifrunner.gnm1.ann1.HD4WN1 Arachis hypogaea HOM05D003622 ORTHO05D004453 1.1e-273 946.8 846 61.3
Gohir.A08G088500 Gossypium hirsutum HOM05D003622 ORTHO05D004453 3.9e-271 938.3 852 60.8
Lj4g0015305 Lotus japonicus HOM05D003622 ORTHO05D004453 5.1e-271 937.9 853 60.0
Potri.006G065600 Populus trichocarpa HOM05D003622 ORTHO05D004453 5.1e-271 937.9 835 60.8
Gohir.A06G053800 Gossypium hirsutum HOM05D003622 ORTHO05D004453 1.1e-270 936.8 854 62.2
Manes.14G116100 Manihot esculenta HOM05D003622 ORTHO05D004453 1.1e-270 936.8 861 60.7
Sabra18G0107100 Salix brachista HOM05D003622 ORTHO05D004453 1.1e-270 936.8 832 60.7
Ciclev10007427m.g Citrus clementina HOM05D003622 ORTHO05D004453 4.4e-270 934.9 860 60.1
Dinv36478 Davidia involucrata HOM05D003622 ORTHO05D004453 2.8e-269 932.2 851 60.2
Lalb_Chr13g0301561 Lupinus albus HOM05D003622 ORTHO05D004453 5.3e-268 927.9 854 60.4
Dinv41474 Davidia involucrata HOM05D003622 ORTHO05D004453 2.0e-267 926.0 831 60.8
Gohir.A13G200800 Gossypium hirsutum HOM05D003622 ORTHO05D004453 2.0e-267 926.0 856 60.0
arahy.Tifrunner.gnm1.ann1.DJE2D0 Arachis hypogaea HOM05D003622 ORTHO05D004453 6.5e-266 921.0 892 58.4
Gorai.004G107500 Gossypium raimondii HOM05D003622 ORTHO05D004453 1.6e-264 916.4 853 59.7
TWI34G1661 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 2.1e-264 916.0 847 58.6
MELO3C010313.2 Cucumis melo HOM05D003622 ORTHO05D004453 2.7e-264 915.6 854 60.1
Lalb_Chr12g0198231 Lupinus albus HOM05D003622 ORTHO05D004453 3.6e-264 915.2 852 60.1
CsaV3_1G026740 Cucumis sativus L. HOM05D003622 ORTHO05D004453 6.1e-264 914.4 854 60.1
TWI32G0590 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 1.7e-261 906.4 849 58.3
Actinidia21950 Actinidia chinensis HOM05D003622 ORTHO05D004453 1.4e-260 903.3 854 58.1
TWI63G1810 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 1.4e-260 903.3 848 57.5
Sed0001481 Sechium edule HOM05D003622 ORTHO05D004453 1.6e-259 899.8 855 59.1
Medtr4g115350 Medicago truncatula HOM05D003622 ORTHO05D004453 6.5e-258 894.4 853 58.6
Lalb_Chr07g0179261 Lupinus albus HOM05D003622 ORTHO05D004453 2.5e-257 892.5 853 58.1
Gohir.D08G099700 Gossypium hirsutum HOM05D003622 ORTHO05D004453 7.2e-257 891.0 826 60.4
CSS0022552 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 1.6e-256 889.8 860 57.3
GSVIVG01015594001 Vitis vinifera HOM05D003622 ORTHO05D004453 4.8e-253 878.2 850 57.5
Lalb_Chr11g0072261 Lupinus albus HOM05D003622 ORTHO05D004453 2.2e-250 869.4 874 55.5
Sabra06G0047800 Salix brachista HOM05D003622 ORTHO05D004453 1.1e-249 867.1 980 51.6
Psat0s188g0040 Pisum sativum HOM05D003622 ORTHO05D004453 1.2e-248 863.6 852 57.2
Eucgr.C01387 Eucalyptus grandis HOM05D003622 ORTHO05D004453 1.6e-248 863.2 831 57.0
Atru.chr7.1951 Acer truncatum HOM05D003622 ORTHO05D004453 8.0e-248 860.9 721 64.6
TAR625G0175 Trochodendron aralioides HOM05D003622 ORTHO05D004453 9.1e-244 847.4 856 56.8
TPR.G24803 Trifolium pratense HOM05D003622 ORTHO05D004453 2.9e-242 842.4 855 55.8
Duzib187G1700 Durio zibethinus HOM05D003622 ORTHO05D004453 3.6e-240 835.5 846 56.5
Ca_06943_v3 Cicer arietinum L. HOM05D003622 ORTHO05D004453 3.0e-239 832.4 819 57.6
Sed0008371 Sechium edule HOM05D003622 ORTHO05D004453 5.2e-239 831.6 844 56.8
Nitab4.5_0002008g0030 Nicotiana tabacum HOM05D003622 ORTHO05D004453 6.8e-231 804.7 863 53.3
Nitab4.5_0003393g0070 Nicotiana tabacum HOM05D003622 ORTHO05D004453 1.5e-230 803.5 870 53.2
Peaxi162Scf00088g01327 Petunia axillaris HOM05D003622 ORTHO05D004453 2.2e-229 799.7 857 54.3
Aqoxy7G03634 Aquilegia oxysepala HOM05D003622 ORTHO05D004453 4.6e-227 792.0 852 53.1
Solyc07g007890.3 Solanum lycopersicum HOM05D003622 ORTHO05D004453 3.0e-226 789.3 858 53.0
Sopen07g003790 Solanum pennellii HOM05D003622 ORTHO05D004453 3.0e-226 789.3 858 53.0
vmacro07722 Vaccinium macrocarpon HOM05D003622 ORTHO05D004453 3.0e-226 789.3 802 55.2
PGSC0003DMG400030907 Solanum tuberosum HOM05D003622 ORTHO05D004453 1.1e-225 787.3 858 52.9
AUR62013307 Chenopodium quinoa HOM05D003622 ORTHO05D004453 5.6e-225 785.0 843 53.1
AUR62011177 Chenopodium quinoa HOM05D003622 ORTHO05D004453 8.9e-223 777.7 843 52.8
PGR102G2297 Punica granatum HOM05D003622 ORTHO05D004453 6.4e-221 771.5 849 52.8
EL10Ac8g18721 Beta vulgaris HOM05D003622 ORTHO05D004453 9.2e-220 767.7 841 52.2
Cpa.g.sc46.43 Carica papaya HOM05D003622 ORTHO05D004453 1.6e-219 766.9 647 63.5
Hund09284 Selenicereus undatus HOM05D003622 ORTHO05D004453 1.7e-218 763.5 843 52.1
Sc08g0006260 Simmondsia chinensis HOM05D003622 ORTHO05D004453 6.6e-218 761.5 849 51.5
SalBow1G3694 Salvia bowleyana HOM05D003622 ORTHO05D004453 3.3e-217 759.2 855 51.3
CAN.G1266.4 Capsicum annuum HOM05D003622 ORTHO05D004453 3.6e-216 755.7 840 51.3
Rhsim01G0061400 Rhododendron simsii HOM05D003622 ORTHO05D004453 4.7e-216 755.4 992 46.3
Duzib150G0473 Durio zibethinus HOM05D003622 ORTHO05D004453 8.1e-216 754.6 853 51.3
Hund26549 Selenicereus undatus HOM05D003622 ORTHO05D004453 4.0e-215 752.3 838 51.8
THA.LOC104808966 Tarenaya hassleriana HOM05D003622 ORTHO05D004453 5.8e-214 748.4 844 51.5
PSO017G7291 Papaver somniferum HOM05D003622 ORTHO05D004453 1.3e-213 747.3 827 51.8
Cc06_g08050 Coffea canephora HOM05D003622 ORTHO05D004453 1.7e-213 746.9 859 51.2
PSO170G2238 Papaver somniferum HOM05D003622 ORTHO05D004453 6.4e-213 745.0 828 51.1
MSTRG.26437 Avicennia marina HOM05D003622 ORTHO05D004453 1.6e-211 740.3 855 51.2
vmacro06154 Vaccinium macrocarpon HOM05D003622 ORTHO05D004453 5.1e-210 735.3 840 51.7
Hma1.2p1_0343F.1_g130930 Hydrangea macrophylla HOM05D003622 ORTHO05D004453 1.1e-209 734.2 711 56.7
Thhalv10003437m.g Eutrema salsugineum HOM05D003622 ORTHO05D004453 3.3e-209 732.6 828 51.4
CARHR217470 Cardamine hirsuta HOM05D003622 ORTHO05D004453 9.6e-209 731.1 830 50.2
Gohir.D13G206400 Gossypium hirsutum HOM05D003622 ORTHO05D004453 4.7e-208 728.8 857 50.6
SalBow6G3081 Salvia bowleyana HOM05D003622 ORTHO05D004453 2.0e-206 723.4 855 49.2
BcaB06g26937 Brassica carinata HOM05D003622 ORTHO05D004453 2.1e-203 713.4 831 50.2
Rhsim03G0251600 Rhododendron simsii HOM05D003622 ORTHO05D004453 2.1e-203 713.4 841 52.2
A04p09700 Brassica napus HOM05D003622 ORTHO05D004453 6.0e-203 711.8 824 50.2
C04p43220 Brassica napus HOM05D003622 ORTHO05D004453 1.5e-201 707.2 834 49.8
Migut.K00423 Erythranthe guttata HOM05D003622 ORTHO05D004453 3.3e-201 706.1 847 50.1
DCAR_020889 Daucus carota HOM05D003622 ORTHO05D004453 2.8e-200 703.0 843 50.4
DCAR_009323 Daucus carota HOM05D003622 ORTHO05D004453 3.6e-200 702.6 885 48.5
Aa31LG9G18070 Aethionema arabicum HOM05D003622 ORTHO05D004453 3.1e-199 699.5 829 49.7
Sp7g06890 Schrenkiella parvula HOM05D003622 ORTHO05D004453 6.9e-199 698.4 831 50.3
BcaB02g08053 Brassica carinata HOM05D003622 ORTHO05D004453 1.5e-198 697.2 820 48.8
SGA_v2.0_scaffold464G52002 Striga asiatica HOM05D003622 ORTHO05D004453 1.9e-196 690.3 836 50.2
Actinidia07317 Actinidia chinensis HOM05D003622 ORTHO05D004453 3.2e-196 689.5 700 55.4
THA.LOC104826553 Tarenaya hassleriana HOM05D003622 ORTHO05D004453 9.3e-196 688.0 846 48.5
ATR0800G088 Amborella trichopoda HOM05D003622 ORTHO05D004453 1.6e-195 687.2 842 48.9
AL7G44290 Arabidopsis lyrata HOM05D003622 ORTHO05D004453 2.7e-195 686.4 831 49.3
ClCG06G011530 Citrullus lanatus HOM05D003622 ORTHO05D004453 2.7e-195 686.4 653 59.0
Carub.0007s3125 Capsella rubella HOM05D003622 ORTHO05D004453 1.5e-193 680.6 830 47.6
CSS0014966 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 4.8e-192 675.6 669 56.7
CDE03G0113 Ceratophyllum demersum HOM05D003622 ORTHO05D004453 8.1e-192 674.9 825 47.8
CSS0042071 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 9.9e-190 667.9 670 56.3
SGA_v2.0_scaffold63G21826 Striga asiatica HOM05D003622 ORTHO05D004453 3.5e-187 659.4 757 51.5
AT5G35430 Arabidopsis thaliana HOM05D003622 ORTHO05D004453 2.3e-186 656.8 829 47.0
Nn2g12120 Nelumbo nucifera HOM05D003622 ORTHO05D004453 1.6e-184 650.6 672 56.4
Migut.J01215 Erythranthe guttata HOM05D003622 ORTHO05D004453 6.9e-183 645.2 844 46.7
Lj7C432T7 Lonicera japonica HOM05D003622 ORTHO05D004453 2.0e-182 643.7 930 44.5
CDE06G0586 Ceratophyllum demersum HOM05D003622 ORTHO05D004453 4.5e-182 642.5 824 45.5
Carub.0001s0938 Capsella rubella HOM05D003622 ORTHO05D004453 2.7e-179 633.3 829 45.8
HanXRQChr10g0315861 Helianthus annuus HOM05D003622 ORTHO05D004453 3.7e-176 622.9 826 45.0
HanXRQChr12g0356631 Helianthus annuus HOM05D003622 ORTHO05D004453 8.2e-176 621.7 840 44.4
TAR636G0579 Trochodendron aralioides HOM05D003622 ORTHO05D004453 9.7e-169 598.2 610 55.7
Lsat_1_v5_gn_5_91841 Lactuca sativa HOM05D003622 ORTHO05D004453 1.8e-167 594.0 832 44.2
MBI13_g37002_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 2.0e-166 590.5 643 52.1
Zm00001eb308130 Zea mays HOM05D003622 ORTHO05D004453 1.3e-160 571.2 819 42.4
Zm00001eb095440 Zea mays HOM05D003622 ORTHO05D004453 2.8e-160 570.1 828 41.8
Ah.09g224810 Amaranthus hybridus HOM05D003622 ORTHO05D004453 3.7e-160 569.7 645 52.2
ECA234G4065 Erigeron canadensis HOM05D003622 ORTHO05D004453 1.4e-159 567.8 826 42.9
Os09g0123100 Oryza sativa ssp. japonica HOM05D003622 ORTHO05D004453 1.8e-159 567.4 820 42.2
Oeu056946.1 Olea europaea HOM05D003622 ORTHO05D004453 6.9e-159 565.5 646 51.2
BcaC02g09474 Brassica carinata HOM05D003622 ORTHO05D004453 3.3e-153 546.6 834 42.8
Oeu052762.1 Olea europaea HOM05D003622 ORTHO05D004453 5.7e-153 545.8 644 50.2
SEGI_29075 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 3.5e-150 536.6 863 39.9
unitig_0.g2718 Utricularia gibba HOM05D003622 ORTHO05D004453 9.4e-148 528.5 878 41.8
BraA04t16629Z Brassica rapa HOM05D003622 ORTHO05D004453 1.4e-135 488.0 569 51.1
Mapoly0024s0101 Marchantia polymorpha HOM05D003622 ORTHO05D004453 1.4e-135 488.0 912 37.8
BolC4t25899H Brassica oleracea HOM05D003622 ORTHO05D004453 1.2e-134 485.0 579 50.6
Oeu055962.1 Olea europaea HOM05D003622 ORTHO05D004453 4.0e-130 469.9 775 42.2
Pp3c9_20660 Physcomitrium patens HOM05D003622 ORTHO05D004453 1.4e-127 461.5 854 37.0
BcaC02g09475 Brassica carinata HOM05D003622 ORTHO05D004453 1.9e-124 451.1 777 38.2
SMO351G0297 Selaginella moellendorffii HOM05D003622 ORTHO05D004453 2.5e-124 450.7 822 37.3
HPP92_000465 Vanilla planifolia HOM05D003622 ORTHO05D004453 2.1e-123 447.6 557 47.2
SHI22466 Sapria himalayana HOM05D003622 ORTHO05D004453 2.6e-121 440.7 673 44.9
Pp3c15_17690 Physcomitrium patens HOM05D003622 ORTHO05D004453 1.3e-120 438.3 842 36.8
CSS0037660 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 5.6e-116 422.9 438 53.0
unitig_748.g7167 Utricularia gibba HOM05D003622 ORTHO05D004453 8.9e-106 389.0 467 47.8
Oeu052177.3 Olea europaea HOM05D003622 ORTHO05D004453 6.2e-75 286.6 804 30.8
CBR_g27935 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-70 271.2 676 32.1
MBI13_g02370_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 2.7e-70 271.2 438 43.4
TAR383G0647 Trochodendron aralioides HOM05D003622 ORTHO05D004453 6.5e-48 196.8 196 53.6
unitig_748.g7166 Utricularia gibba HOM05D003622 ORTHO05D004453 8.5e-48 196.4 350 38.9
BolC4t25898H Brassica oleracea HOM05D003622 ORTHO05D004453 1.9e-47 195.3 322 41.3
MBI13_g36807_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 2.8e-43 181.4 119 69.7
A04p09720 Brassica napus HOM05D003622 ORTHO05D004453 1.8e-42 178.7 265 43.0
Actinidia38718 Actinidia chinensis HOM05D003622 ORTHO05D004453 2.2e-40 171.8 179 52.0
BraA04t16634Z Brassica rapa HOM05D003622 ORTHO05D004453 2.9e-40 171.4 264 40.5
C04p43210 Brassica napus HOM05D003622 ORTHO05D004453 9.4e-39 166.4 209 44.5
AagrBONN_evm.TU.Sc2ySwM_344.2256 Anthoceros agrestis HOM05D003622 ORTHO05D004453 3.9e-37 161.0 305 35.4
SEGI_39442 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 4.4e-36 157.5 290 39.0
Cpa.g.sc46.42 Carica papaya HOM05D003622 ORTHO05D004453 9.7e-36 156.4 144 59.0
Haze_25503 Corylus avellana HOM05D003622 ORTHO05D004453 6.3e-35 153.7 117 69.2
HPP92_000473 Vanilla planifolia HOM05D003622 ORTHO05D004453 5.3e-34 150.6 230 40.0
TAR636G1395 Trochodendron aralioides HOM05D007419 ORTHO05D009327 8.0e-30 136.7 138 54.3
AagrBONN_evm.TU.Sc2ySwM_344.2257 Anthoceros agrestis HOM05D003622 ORTHO05D004453 2.3e-29 135.2 215 35.8
ClCG06G011520 Citrullus lanatus HOM05D003622 ORTHO05D004453 4.1e-26 124.4 118 57.6
MD02G1023900 Malus domestica HOM05D003622 ORTHO05D048666 7.2e-23 113.6 90 71.1
SEGI_22443 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 8.3e-19 100.1 120 43.3
SHI22468 Sapria himalayana HOM05D003622 ORTHO05D004453 4.1e-18 97.8 111 51.4
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 1.2e-17 96.3 71 64.8
ClCG06G011510 Citrullus lanatus HOM05D003622 ORTHO05D004453 2.7e-17 95.1 105 52.4
Actinidia38717 Actinidia chinensis HOM05D003622 ORTHO05D004453 2.2e-16 92.0 111 49.5
MBI13_g48239_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 8.5e-16 90.1 145 41.4
SEGI_04910 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 4.2e-15 87.8 174 34.5
SEGI_12874 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 1.6e-14 85.9 75 52.0
RcHm_v2.0_Chr5g0023731 Rosa chinensis HOM05D003622 ORTHO05D048666 6.1e-14 84.0 62 75.8
Potri.004G126780 Populus trichocarpa HOM05D000030 ORTHO05D000009 8.8e-13 80.1 100 43.0
Sabra10G0016400 Salix brachista HOM05D003622 ORTHO05D004453 8.8e-13 80.1 51 68.6
Potri.004G126740 Populus trichocarpa HOM05D000030 ORTHO05D000009 7.5e-12 77.0 100 42.0
HPP92_000472 Vanilla planifolia HOM05D003622 ORTHO05D004453 3.1e-10 71.6 144 39.6
Cre08.g376200 Chlamydomonas reinhardtii HOM05D003622 ORTHO05D004453 2.9e-08 65.1 173 31.2
CBR_g27932 Chara braunii HOM05D000019 ORTHO05D000002 1.9e-07 62.4 87 35.6
Oeu042754.1 Olea europaea HOM05D003622 ORTHO05D004453 2.1e-06 58.9 42 61.9


User provided reference genes

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