Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g02530 Fragaria vesca HOM05D005191 ORTHO05D006725 0.0e+00 1452.2 725 100.0
FAN19G1407 Fragaria x ananassa HOM05D005191 ORTHO05D006725 0.0e+00 1448.3 725 99.6
FAN28G1162 Fragaria x ananassa HOM05D005191 ORTHO05D006725 0.0e+00 1438.3 720 99.4
FAN26G1428 Fragaria x ananassa HOM05D005191 ORTHO05D006725 0.0e+00 1433.3 725 98.8
FAN23G0864 Fragaria x ananassa HOM05D005191 ORTHO05D006725 0.0e+00 1426.8 725 98.1
RcHm_v2.0_Chr2g0087561 Rosa chinensis HOM05D005191 ORTHO05D006725 0.0e+00 1382.1 725 94.6
Prupe.7G249300 Prunus persica HOM05D005191 ORTHO05D006725 0.0e+00 1240.3 722 84.2
MD15G1165500 Malus domestica HOM05D005191 ORTHO05D006725 0.0e+00 1196.4 738 80.5
QL02p090053 Quercus lobata HOM05D005191 ORTHO05D006725 0.0e+00 1175.6 724 79.0
MD02G1022800 Malus domestica HOM05D005191 ORTHO05D006725 0.0e+00 1172.1 725 80.0
Cfa002299 Carpinus fangiana HOM05D005191 ORTHO05D006725 0.0e+00 1145.2 724 76.9
CiPaw.03G249200 Carya illinoinensis HOM05D005191 ORTHO05D006725 0.0e+00 1137.1 724 76.5
CANSAT11G2540 Cannabis sativa HOM05D005191 ORTHO05D006725 0.0e+00 1129.4 721 75.5
Gorai.004G107900 Gossypium raimondii HOM05D005191 ORTHO05D006725 0.0e+00 1118.6 723 75.1
Thecc.09G133700 Theobroma cacao HOM05D005191 ORTHO05D006725 0.0e+00 1111.7 714 75.6
Gohir.A08G088900 Gossypium hirsutum HOM05D005191 ORTHO05D006725 0.0e+00 1105.1 723 74.6
TWI63G0111 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 0.0e+00 1095.1 723 73.7
Ciclev10007583m.g Citrus clementina HOM05D005191 ORTHO05D006725 0.0e+00 1094.3 724 73.6
COL.COLO4_15579 Corchorus olitorius HOM05D005191 ORTHO05D006725 0.0e+00 1088.9 725 74.1
Potri.006G065000 Populus trichocarpa HOM05D005191 ORTHO05D006725 0.0e+00 1088.6 711 74.8
CSS0021683 Camellia sinensis var. sinensis HOM05D005191 ORTHO05D006725 5.0e-312 1074.7 737 72.2
TAR625G1134 Trochodendron aralioides HOM05D005191 ORTHO05D006725 6.0e-311 1070.5 726 72.5
Potri.T124807 Populus trichocarpa HOM05D005191 ORTHO05D006725 2.9e-310 1068.1 711 73.4
TWI32G0152 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 4.9e-310 1067.4 723 71.8
Potri.018G125171 Populus trichocarpa HOM05D005191 ORTHO05D006725 6.4e-310 1067.0 711 73.4
Sed0022210 Sechium edule HOM05D005191 ORTHO05D006725 6.4e-310 1067.0 711 72.2
Glyma.17G110600 Glycine max HOM05D005191 ORTHO05D006725 2.3e-307 1058.5 718 73.1
CsaV3_1G027890 Cucumis sativus L. HOM05D005191 ORTHO05D006725 4.3e-306 1054.3 711 72.2
Sabra18G0106500 Salix brachista HOM05D005191 ORTHO05D006725 6.2e-305 1050.4 735 70.9
Eucgr.E03534 Eucalyptus grandis HOM05D005191 ORTHO05D006725 6.9e-304 1047.0 725 70.3
Gohir.D08G100100 Gossypium hirsutum HOM05D005191 ORTHO05D006725 8.9e-304 1046.6 680 74.7
Phvul.003G169500 Phaseolus vulgaris HOM05D005191 ORTHO05D006725 2.1e-300 1035.4 723 71.1
Cc06_g08000 Coffea canephora HOM05D005191 ORTHO05D006725 2.7e-300 1035.0 723 70.1
Cc06_g08010 Coffea canephora HOM05D005191 ORTHO05D006725 2.7e-300 1035.0 723 70.1
Glyma.13G160800 Glycine max HOM05D005191 ORTHO05D006725 2.7e-300 1035.0 719 71.5
VMungo1215G2132 Vigna mungo HOM05D005191 ORTHO05D006725 4.3e-298 1027.7 725 70.8
THA.LOC104826555 Tarenaya hassleriana HOM05D005191 ORTHO05D006725 2.8e-297 1025.0 714 68.8
Lalb_Chr12g0198261 Lupinus albus HOM05D005191 ORTHO05D006725 4.8e-297 1024.2 727 69.9
Cpa.g.sc46.51 Carica papaya HOM05D005191 ORTHO05D006725 1.1e-296 1023.1 723 69.7
Lj7A435G51 Lonicera japonica HOM05D005191 ORTHO05D006725 1.8e-296 1022.3 724 69.1
Nn2g12129 Nelumbo nucifera HOM05D005191 ORTHO05D006725 9.0e-296 1020.0 719 70.0
ClCG06G011590 Citrullus lanatus HOM05D005191 ORTHO05D006725 2.6e-295 1018.5 773 66.0
arahy.Tifrunner.gnm1.ann1.0L2UMW Arachis hypogaea HOM05D005191 ORTHO05D006725 2.9e-294 1015.0 714 70.0
arahy.Tifrunner.gnm1.ann1.W0WM15 Arachis hypogaea HOM05D005191 ORTHO05D006725 2.4e-293 1011.9 714 69.7
ECA236G3625 Erigeron canadensis HOM05D005191 ORTHO05D006725 5.4e-293 1010.7 709 69.7
Aqoxy7G02403 Aquilegia oxysepala HOM05D005191 ORTHO05D006725 5.1e-291 1004.2 706 70.0
CAN.G1663.1 Capsicum annuum HOM05D005191 ORTHO05D006725 8.7e-291 1003.4 725 67.3
Sopen07g001100 Solanum pennellii HOM05D005191 ORTHO05D006725 1.3e-289 999.6 728 66.8
Manes.06G046300 Manihot esculenta HOM05D005191 ORTHO05D006725 4.8e-289 997.7 726 67.2
Sc18g0000280 Simmondsia chinensis HOM05D005191 ORTHO05D006725 3.1e-288 995.0 715 67.7
Rhsim03G0251800 Rhododendron simsii HOM05D005191 ORTHO05D006725 6.9e-288 993.8 712 69.7
Lj4g0015768 Lotus japonicus HOM05D005191 ORTHO05D006725 3.8e-286 988.0 720 68.1
Duzib150G0407 Durio zibethinus HOM05D005191 ORTHO05D006725 4.9e-286 987.6 731 68.5
PSO017G2350 Papaver somniferum HOM05D005191 ORTHO05D006725 1.6e-284 982.6 703 68.6
MSTRG.26350 Avicennia marina HOM05D005191 ORTHO05D006725 3.5e-284 981.5 711 66.4
Lsat_1_v5_gn_8_61061 Lactuca sativa HOM05D005191 ORTHO05D006725 3.5e-284 981.5 693 68.4
PSO170G6846 Papaver somniferum HOM05D005191 ORTHO05D006725 7.9e-284 980.3 703 68.3
Migut.K00420 Erythranthe guttata HOM05D005191 ORTHO05D006725 2.5e-282 975.3 731 64.8
HanXRQChr05g0143851 Helianthus annuus HOM05D005191 ORTHO05D006725 5.6e-282 974.2 711 67.8
Nitab4.5_0000374g0090 Nicotiana tabacum HOM05D005191 ORTHO05D006725 3.7e-281 971.5 689 67.9
Psat4g036440 Pisum sativum HOM05D005191 ORTHO05D006725 7.6e-279 963.8 716 66.6
SGA_v2.0_scaffold63G21813 Striga asiatica HOM05D005191 ORTHO05D006725 1.7e-278 962.6 723 65.3
AUR62013300 Chenopodium quinoa HOM05D005191 ORTHO05D006725 6.5e-278 960.7 735 65.7
Peaxi162Scf00088g01225 Petunia axillaris HOM05D005191 ORTHO05D006725 1.1e-277 959.9 711 66.1
Solyc07g007810.3 Solanum lycopersicum HOM05D005191 ORTHO05D006725 1.4e-277 959.5 728 64.8
TPR.G7618 Trifolium pratense HOM05D005191 ORTHO05D006725 6.9e-272 940.6 694 67.1
PGR142G3543 Punica granatum HOM05D005191 ORTHO05D006725 9.3e-269 930.2 711 66.4
Dinv41468 Davidia involucrata HOM05D005191 ORTHO05D006725 4.6e-268 927.9 586 77.3
Hund26552 Selenicereus undatus HOM05D005191 ORTHO05D006725 6.7e-267 924.1 729 63.8
Aa31LG8G12200 Aethionema arabicum HOM05D005191 ORTHO05D006725 1.5e-263 912.9 714 64.0
EL10Ac8g18733 Beta vulgaris HOM05D005191 ORTHO05D006725 1.7e-262 909.4 824 57.8
Sp3g26260 Schrenkiella parvula HOM05D005191 ORTHO05D006725 9.7e-258 893.6 715 62.4
Atru.chr7.1956 Acer truncatum HOM05D005191 ORTHO05D006725 3.8e-254 881.7 550 75.6
DCAR_009327 Daucus carota HOM05D005191 ORTHO05D006725 5.0e-254 881.3 724 63.0
AUR62011184 Chenopodium quinoa HOM05D005191 ORTHO05D006725 3.2e-253 878.6 747 61.4
A06p26710 Brassica napus HOM05D005191 ORTHO05D006725 2.1e-252 875.9 708 61.9
Actinidia26371 Actinidia chinensis HOM05D005191 ORTHO05D006725 2.6e-250 869.0 715 63.9
AT2G11000 Arabidopsis thaliana HOM05D005191 ORTHO05D006725 3.3e-250 868.6 715 61.7
Carub.0003s2755 Capsella rubella HOM05D005191 ORTHO05D006725 9.7e-250 867.1 713 61.3
AL3G44790 Arabidopsis lyrata HOM05D005191 ORTHO05D006725 3.7e-249 865.1 714 61.1
BcaB02g10775 Brassica carinata HOM05D005191 ORTHO05D006725 1.8e-248 862.8 709 61.6
BcaC01g02222 Brassica carinata HOM05D005191 ORTHO05D006725 5.3e-248 861.3 708 61.2
C03p67700 Brassica napus HOM05D005191 ORTHO05D006725 5.3e-248 861.3 708 61.2
Nitab4.5_0005159g0010 Nicotiana tabacum HOM05D005191 ORTHO05D006725 2.6e-247 859.0 615 66.5
BolSC21t60229H Brassica oleracea HOM05D005191 ORTHO05D006725 7.7e-247 857.4 712 60.4
Medtr4g115450 Medicago truncatula HOM05D005191 ORTHO05D006725 1.8e-243 846.3 610 68.2
ATR0800G098 Amborella trichopoda HOM05D005191 ORTHO05D006725 2.8e-241 839.0 661 64.0
BraA06t25606Z Brassica rapa HOM05D005191 ORTHO05D006725 5.0e-238 828.2 725 59.2
MELO3C010304.2 Cucumis melo HOM05D005191 ORTHO05D006725 1.2e-234 817.0 729 58.8
SEGI_14008 Sequoiadendron giganteum HOM05D005191 ORTHO05D006725 9.2e-208 727.6 723 54.1
Thhalv10022576m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 1.1e-205 720.7 609 59.1
GSVIVG01015604001 Vitis vinifera HOM05D005191 ORTHO05D006725 5.2e-203 711.8 473 72.7
SalBow1G1849 Salvia bowleyana HOM05D005191 ORTHO05D006725 1.7e-198 696.8 622 55.1
vmacro06157 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 6.4e-193 678.3 469 69.9
Ah.14g079340 Amaranthus hybridus HOM05D005191 ORTHO05D006725 1.1e-179 634.4 467 63.8
CARHR104890 Cardamine hirsuta HOM05D005191 ORTHO05D006725 7.6e-178 628.2 470 66.2
Pp3c26_8550 Physcomitrium patens HOM05D005191 ORTHO05D006725 1.4e-176 624.0 739 46.8
Oeu052176.1 Olea europaea HOM05D005191 ORTHO05D006725 1.9e-176 623.6 473 63.4
Mapoly0005s0239 Marchantia polymorpha HOM05D005191 ORTHO05D006725 5.1e-174 615.5 745 46.0
HPP92_010843 Vanilla planifolia HOM05D005191 ORTHO05D006725 5.6e-173 612.1 457 66.3
Haze_25489 Corylus avellana HOM05D005191 ORTHO05D006725 3.4e-170 602.8 444 69.6
Hund26401 Selenicereus undatus HOM05D005191 ORTHO05D006725 2.0e-162 577.0 480 60.8
AagrBONN_evm.TU.Sc2ySwM_344.2372 Anthoceros agrestis HOM05D005191 ORTHO05D006725 2.4e-155 553.5 688 43.9
Zm00001eb192130 Zea mays HOM05D005191 ORTHO05D006725 4.1e-155 552.7 429 64.6
Ca_21665_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 2.0e-154 550.4 392 69.9
Haze_25491 Corylus avellana HOM05D005191 ORTHO05D006725 3.9e-142 509.6 381 66.7
unitig_0.g2715 Utricularia gibba HOM05D005191 ORTHO05D006725 4.8e-140 502.7 421 61.5
Os02g0803250 Oryza sativa ssp. japonica HOM05D005191 ORTHO05D006725 3.8e-137 493.0 689 42.8
CBR_g29413 Chara braunii HOM05D005191 ORTHO05D006725 1.5e-128 464.5 755 38.1
SMO174G0034 Selaginella moellendorffii HOM05D005191 ORTHO05D006725 4.0e-126 456.4 737 38.0
Sabra06G0047500 Salix brachista HOM05D005191 ORTHO05D006725 2.1e-119 434.1 308 69.5
CDE05G1862 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 1.7e-116 424.5 372 61.3
Actinidia38723 Actinidia chinensis HOM05D005191 ORTHO05D006725 1.2e-114 418.3 293 71.0
Ca_06948_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 1.6e-111 407.9 327 62.4
GSVIVG01002648001 Vitis vinifera HOM05D005191 ORTHO05D006725 3.9e-89 333.6 193 82.9
FAN06G0842 Fragaria x ananassa HOM05D005191 ORTHO05D006725 8.6e-81 305.8 315 56.8
Psat6g224720 Pisum sativum HOM05D005191 ORTHO05D006725 2.9e-76 290.8 202 68.3
vmacro06156 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 8.4e-68 262.7 245 56.7
FAN06G5005 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.1e-48 199.1 267 46.1
FAN10G4062 Fragaria x ananassa HOM05D005191 ORTHO05D006725 4.5e-45 187.2 126 82.5
Rhsim13G0106800 Rhododendron simsii HOM05D005191 ORTHO05D006725 7.1e-43 179.9 143 66.4
RcHm_v2.0_Chr5g0051701 Rosa chinensis HOM05D005191 ORTHO05D006725 1.6e-42 178.7 133 70.7
CDE05G1976 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 1.9e-40 171.8 159 54.1
FvH4_7g23890 Fragaria vesca HOM05D005191 ORTHO05D006725 2.5e-40 171.4 150 59.3
TPR.G8947 Trifolium pratense HOM05D005191 ORTHO05D006725 7.4e-40 169.9 112 75.0
unitig_0.g2716 Utricularia gibba HOM05D005191 ORTHO05D006725 2.6e-37 161.4 152 54.6
Actinidia38722 Actinidia chinensis HOM05D005191 ORTHO05D006725 1.7e-36 158.7 162 53.1
FAN10G2766 Fragaria x ananassa HOM05D005191 ORTHO05D006725 2.2e-36 158.3 83 91.6
Nitab4.5_0005159g0020 Nicotiana tabacum HOM05D005191 ORTHO05D006725 1.1e-35 156.0 102 74.5
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 3.6e-34 151.0 140 60.7
FAN26G2291 Fragaria x ananassa HOM05D005191 ORTHO05D006725 5.1e-33 147.1 88 83.0
PRCOL_00001705 Prasinoderma coloniale HOM05D005191 ORTHO05D006725 4.2e-27 127.5 526 26.8
Cre06.g300650 Chlamydomonas reinhardtii HOM05D005191 ORTHO05D006725 5.7e-24 117.1 809 22.5
MBI13_g29624_MAGBIO Magnolia biondii HOM05D005191 ORTHO05D006725 2.5e-19 101.7 63 74.6
FvH4_1g29180 Fragaria vesca HOM05D005191 ORTHO05D025363 3.6e-18 97.8 48 97.9
Rhsim05G0138400 Rhododendron simsii HOM05D005191 ORTHO05D006725 5.2e-17 94.0 115 53.9
COL.COLO4_23752 Corchorus olitorius HOM05D005191 ORTHO05D016248 5.7e-16 90.5 61 73.8
COL.COLO4_21409 Corchorus olitorius HOM05D005191 ORTHO05D016248 2.4e-14 85.1 56 76.8
Rhsim10G0150400 Rhododendron simsii HOM05D005191 ORTHO05D030537 2.0e-13 82.0 51 80.4
FAN06G4723 Fragaria x ananassa HOM05D005191 ORTHO05D006725 8.5e-12 76.6 40 92.5
Sp3g26280 Schrenkiella parvula HOM05D005191 ORTHO05D012938 1.9e-11 75.5 51 70.6
GSVIVG01012804001 Vitis vinifera HOM05D005191 ORTHO05D006725 9.4e-11 73.2 55 63.6
Thhalv10022959m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 2.1e-10 72.0 97 45.4
COL.COLO4_37048 Corchorus olitorius HOM05D005191 ORTHO05D006725 1.1e-06 59.7 40 70.0


User provided reference genes

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