Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 6.7e-310 1066.6 587 100.0
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.3e-304 1047.7 603 96.7
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 5.4e-291 1003.8 570 96.8
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.6e-287 991.1 577 95.3
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 5.8e-285 983.8 577 94.8
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 2.2e-276 955.3 559 92.7
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 1.7e-236 822.8 570 77.9
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 6.7e-233 810.8 563 76.4
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 1.6e-231 806.2 562 77.4
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 7.2e-227 790.8 563 77.4
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 8.8e-217 757.3 563 76.2
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 5.7e-216 754.6 563 76.0
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 1.6e-210 736.5 563 70.7
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 5.7e-208 728.0 562 69.2
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 1.6e-205 719.9 566 69.8
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 3.0e-201 705.7 570 68.1
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 2.6e-200 702.6 560 66.8
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 4.1e-198 695.3 557 68.0
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 5.4e-198 694.9 561 67.6
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 4.5e-197 691.8 557 67.3
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 1.3e-196 690.3 558 65.8
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 4.2e-195 685.3 562 65.3
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 1.2e-194 683.7 558 67.2
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 1.6e-194 683.3 557 67.0
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 1.6e-194 683.3 558 64.0
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 3.6e-194 682.2 557 67.0
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 4.0e-193 678.7 557 66.4
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 3.4e-192 675.6 566 65.9
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 2.2e-191 672.9 567 66.0
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 1.1e-190 670.6 566 63.8
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 4.1e-190 668.7 557 65.9
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 9.1e-190 667.5 558 64.2
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 9.1e-190 667.5 560 65.2
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 2.0e-189 666.4 562 63.7
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 1.0e-188 664.1 566 62.9
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 2.3e-188 662.9 559 64.2
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 2.9e-188 662.5 563 63.2
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.5e-187 660.2 559 64.0
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 9.5e-187 657.5 558 63.6
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 3.6e-186 655.6 562 62.6
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.0e-185 654.1 559 63.3
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 1.8e-185 653.3 556 62.1
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 1.8e-185 653.3 565 64.1
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 5.2e-185 651.7 565 62.8
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 2.9e-183 646.0 561 63.1
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 8.3e-183 644.4 563 63.8
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 1.1e-182 644.0 560 61.4
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 2.0e-181 639.8 555 62.3
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 1.0e-180 637.5 555 62.3
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 1.7e-180 636.7 555 62.2
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 2.3e-180 636.3 559 63.9
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 3.9e-180 635.6 561 61.3
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 1.1e-179 634.0 561 60.8
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 2.5e-179 632.9 561 61.9
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 7.3e-179 631.3 565 59.5
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 8.0e-178 627.9 556 61.2
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 1.4e-177 627.1 559 61.2
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 4.4e-176 622.1 560 59.8
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 9.8e-176 620.9 564 60.1
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 1.3e-175 620.5 566 60.6
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 3.7e-175 619.0 556 61.0
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 4.9e-175 618.6 565 60.9
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 8.3e-175 617.8 568 61.1
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 2.4e-174 616.3 561 59.7
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 3.2e-174 615.9 562 60.0
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 3.2e-174 615.9 655 53.7
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 4.6e-173 612.1 556 59.9
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.6e-173 612.1 505 67.7
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 7.8e-173 611.3 562 58.7
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 1.9e-171 606.7 556 61.7
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 1.9e-171 606.7 559 61.9
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 2.1e-170 603.2 560 58.9
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 1.1e-169 600.9 561 59.0
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.4e-169 600.5 562 56.9
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 2.3e-169 599.7 561 59.9
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 1.5e-168 597.0 573 59.3
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 2.6e-168 596.3 553 57.9
AT2G12550 Arabidopsis thaliana HOM05D004469 ORTHO05D005429 3.4e-168 595.9 563 60.4
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 4.4e-168 595.5 562 57.8
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 7.5e-168 594.7 499 71.1
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 3.7e-167 592.4 586 58.5
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 6.4e-167 591.7 563 58.3
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 6.4e-167 591.7 586 57.7
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 7.1e-166 588.2 559 57.4
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 1.2e-165 587.4 567 56.6
Carub.0003s2782 Capsella rubella HOM05D004469 ORTHO05D005429 6.6e-164 581.6 566 57.2
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 1.1e-163 580.9 552 56.3
Thhalv10022623m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 1.5e-163 580.5 575 57.9
Sp3g26680 Schrenkiella parvula HOM05D004469 ORTHO05D005429 2.8e-162 576.2 565 58.2
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 1.1e-161 574.3 554 54.3
BraA03t13626Z Brassica rapa HOM05D004469 ORTHO05D005429 3.1e-161 572.8 564 58.0
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 5.2e-161 572.0 555 55.9
A03p44900 Brassica napus HOM05D004469 ORTHO05D005429 2.0e-160 570.1 568 58.1
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 2.0e-160 570.1 561 58.1
Thhalv10001944m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 2.0e-160 570.1 568 58.1
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 5.8e-160 568.5 561 57.9
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 1.3e-159 567.4 568 57.0
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 1.4e-158 563.9 575 56.3
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 1.9e-155 553.5 566 54.9
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 7.6e-152 541.6 572 53.8
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 4.6e-149 532.3 582 53.1
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 3.2e-142 509.6 465 68.8
HPP92_003256 Vanilla planifolia HOM05D004469 ORTHO05D005429 1.0e-140 504.6 551 49.2
Aqoxy3G02754 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 8.7e-140 501.5 446 60.8
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 7.4e-139 498.4 413 65.6
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 7.4e-139 498.4 557 53.9
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 2.0e-136 490.3 424 63.9
Glyma.17G107100 Glycine max HOM05D004469 ORTHO05D005429 4.8e-130 469.2 559 49.2
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 6.9e-129 465.3 430 61.4
SEGI_05144 Sequoiadendron giganteum HOM05D004469 ORTHO05D005429 9.3e-126 454.9 557 46.1
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 8.2e-122 441.8 486 60.5
Zm00001eb068670 Zea mays HOM05D004469 ORTHO05D005429 4.5e-120 436.0 577 46.3
Eucgr.L03187 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.0e-119 434.9 300 74.0
Pp3c3_18690 Physcomitrium patens HOM05D004469 ORTHO05D005429 6.5e-119 432.2 560 45.7
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 5.5e-118 429.1 281 77.9
Actinidia14229 Actinidia chinensis HOM05D004469 ORTHO05D005429 1.3e-114 417.9 343 63.6
Mapoly0101s0042 Marchantia polymorpha HOM05D004469 ORTHO05D005429 8.5e-111 405.2 562 42.7
AagrBONN_evm.TU.Sc2ySwM_344.1954 Anthoceros agrestis HOM05D004469 ORTHO05D005429 4.1e-105 386.3 564 42.4
FAN28G2979 Fragaria x ananassa HOM05D004469 ORTHO05D005429 9.1e-105 385.2 236 90.3
SMO367G0076 Selaginella moellendorffii HOM05D004469 ORTHO05D005429 7.7e-104 382.1 570 40.9
BcaC01g03128 Brassica carinata HOM05D004469 ORTHO05D005429 4.4e-99 366.3 387 55.8
arahy.Tifrunner.gnm1.ann1.WC6UXQ Arachis hypogaea HOM05D004469 ORTHO05D005429 3.3e-91 340.1 498 44.8
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 2.3e-84 317.4 225 75.1
arahy.Tifrunner.gnm1.ann1.CP8KSN Arachis hypogaea HOM05D004469 ORTHO05D005429 2.0e-83 314.3 531 42.0
CiPaw.04G177800 Carya illinoinensis HOM05D004469 ORTHO05D005429 2.4e-81 307.4 308 55.8
CDE05G2521 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 8.8e-76 288.9 352 49.4
RcHm_v2.0_Chr5g0072051 Rosa chinensis HOM05D004469 ORTHO05D005429 4.3e-70 270.0 289 60.2
Eucgr.C04403 Eucalyptus grandis HOM05D004469 ORTHO05D005429 4.0e-68 263.5 173 74.6
Cre03.g205650 Chlamydomonas reinhardtii HOM05D004469 ORTHO05D005429 4.7e-61 240.0 410 37.3
Nitab4.5_0010073g0010 Nicotiana tabacum HOM05D004469 ORTHO05D005429 6.8e-60 236.1 158 74.1
RcHm_v2.0_Chr5g0061311 Rosa chinensis HOM05D004469 ORTHO05D005429 2.9e-58 230.7 139 87.1
RcHm_v2.0_Chr5g0072041 Rosa chinensis HOM05D004469 ORTHO05D005429 5.6e-54 216.5 139 82.7
RcHm_v2.0_Chr5g0016141 Rosa chinensis HOM05D004469 ORTHO05D005429 9.8e-51 205.7 119 89.9
RcHm_v2.0_Chr1g0314541 Rosa chinensis HOM05D004469 ORTHO05D005429 1.1e-49 202.2 119 88.2
RcHm_v2.0_Chr2g0147341 Rosa chinensis HOM05D004469 ORTHO05D005429 5.6e-46 189.9 165 77.6
RcHm_v2.0_Chr7g0241381 Rosa chinensis HOM05D004469 ORTHO05D005429 5.6e-46 189.9 165 70.9
Eucgr.C04399 Eucalyptus grandis HOM05D004469 ORTHO05D005429 4.7e-45 186.8 140 68.6
RcHm_v2.0_Chr5g0016151 Rosa chinensis HOM05D004469 ORTHO05D005429 1.1e-41 175.6 172 73.8
CBR_g57083 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-39 168.3 353 36.0
CDE05G0946 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 1.1e-38 165.6 139 57.6
RcHm_v2.0_Chr1g0341151 Rosa chinensis HOM05D004469 ORTHO05D005429 4.7e-37 160.2 157 72.6
RcHm_v2.0_Chr2g0147321 Rosa chinensis HOM05D004469 ORTHO05D005429 4.6e-32 143.7 88 85.2
RcHm_v2.0_Chr5g0016131 Rosa chinensis HOM05D004469 ORTHO05D005429 3.1e-28 131.0 90 78.9
Oeu028136.1 Olea europaea HOM05D004469 ORTHO05D005429 1.6e-24 118.6 112 59.8
CBR_g42181 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-23 115.9 175 41.1
RcHm_v2.0_Chr1g0314551 Rosa chinensis HOM05D004469 ORTHO05D342664 1.2e-19 102.4 114 70.2
Aqoxy4G01419 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.7e-18 98.6 102 46.1
Eucgr.E04270 Eucalyptus grandis HOM05D000097 ORTHO05D000041 5.1e-15 87.0 56 67.9
HanXRQChr04g0107841 Helianthus annuus HOM05D004469 ORTHO05D005429 2.5e-14 84.7 95 54.7
RcHm_v2.0_Chr5g0069491 Rosa chinensis HOM05D004469 ORTHO05D005429 4.3e-14 84.0 56 76.8
RcHm_v2.0_Chr7g0241361 Rosa chinensis HOM05D004469 ORTHO05D005429 7.4e-14 83.2 43 88.4
RcHm_v2.0_Chr7g0241351 Rosa chinensis HOM05D004469 ORTHO05D005429 3.4e-11 74.3 40 92.5
RcHm_v2.0_Chr1g0314531 Rosa chinensis HOM05D004469 ORTHO05D005429 1.3e-10 72.4 52 75.0
Prupe.8G069200 Prunus persica HOM05D004469 ORTHO05D005429 2.9e-10 71.2 61 59.0
RcHm_v2.0_Chr5g0029761 Rosa chinensis HOM05D004469 ORTHO05D005429 1.1e-09 69.3 36 91.7
Eucgr.E04269 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.6e-08 65.5 46 67.4
Thecc.08G193600 Theobroma cacao HOM05D004469 ORTHO05D005429 7.9e-08 63.2 54 59.3
vmacro11088 Vaccinium macrocarpon HOM05D004469 ORTHO05D426737 5.1e-07 60.5 42 64.3
arahy.Tifrunner.gnm1.ann1.RZAJ21 Arachis hypogaea HOM05D004469 ORTHO05D005429 4.3e-06 57.4 41 68.3
HanXRQChr01g0025721 Helianthus annuus HOM05D004469 ORTHO05D005429 5.7e-06 57.0 43 62.8


User provided reference genes

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