Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g01150 Fragaria vesca HOM05D005260 ORTHO05D006390 5.8e-206 720.7 376 100.0
FAN28G1391 Fragaria x ananassa HOM05D005260 ORTHO05D006390 3.9e-202 708.0 372 97.3
FAN19G1826 Fragaria x ananassa HOM05D005260 ORTHO05D006390 3.3e-201 704.9 376 96.8
FAN23G1120 Fragaria x ananassa HOM05D005260 ORTHO05D006390 6.2e-200 700.7 376 95.7
FAN26G1108 Fragaria x ananassa HOM05D005260 ORTHO05D006390 6.9e-199 697.2 372 96.2
RcHm_v2.0_Chr2g0085941 Rosa chinensis HOM05D005260 ORTHO05D006390 1.0e-178 630.2 382 85.6
Prupe.7G260500 Prunus persica HOM05D005260 ORTHO05D006390 1.9e-156 556.2 383 76.8
MD15G1155100 Malus domestica HOM05D005260 ORTHO05D006390 2.4e-151 539.3 383 75.5
QL02p092738 Quercus lobata HOM05D005260 ORTHO05D006390 2.2e-136 489.6 377 71.4
CSS0012073 Camellia sinensis var. sinensis HOM05D005260 ORTHO05D006390 3.5e-134 482.3 392 69.4
Rhsim01G0045600 Rhododendron simsii HOM05D005260 ORTHO05D006390 4.7e-131 471.9 403 67.0
Rhsim01G0036000 Rhododendron simsii HOM05D005260 ORTHO05D006390 1.5e-129 466.8 403 66.3
Glyma.02G202400 Glycine max HOM05D005260 ORTHO05D006390 4.4e-129 465.3 374 66.6
CiPaw.15G174600 Carya illinoinensis HOM05D005260 ORTHO05D006390 9.8e-129 464.2 382 69.4
Rhsim01G0035700 Rhododendron simsii HOM05D005260 ORTHO05D006390 1.3e-128 463.8 388 67.8
Haze_19232 Corylus avellana HOM05D005260 ORTHO05D006390 3.7e-128 462.2 378 69.0
Glyma.17G075400 Glycine max HOM05D005260 ORTHO05D006390 1.4e-127 460.3 375 66.9
Cfa020845 Carpinus fangiana HOM05D005260 ORTHO05D006390 2.1e-126 456.4 378 68.5
Hma1.2p1_0028F.1_g017400 Hydrangea macrophylla HOM05D005260 ORTHO05D006390 2.7e-126 456.1 392 66.1
Potri.006G186900 Populus trichocarpa HOM05D005260 ORTHO05D006390 4.6e-126 455.3 386 66.1
RhsimUnG0040000 Rhododendron simsii HOM05D005260 ORTHO05D006390 1.7e-125 453.4 379 67.5
Lalb_Chr13g0300941 Lupinus albus HOM05D005260 ORTHO05D006390 8.6e-125 451.1 385 65.5
Potri.018G109800 Populus trichocarpa HOM05D005260 ORTHO05D006390 3.3e-124 449.1 383 64.5
Eucgr.C02595 Eucalyptus grandis HOM05D005260 ORTHO05D006390 3.6e-123 445.7 376 64.9
TAR625G1225 Trochodendron aralioides HOM05D005260 ORTHO05D006390 2.3e-122 443.0 378 65.9
Phvul.003G157300 Phaseolus vulgaris HOM05D005260 ORTHO05D006390 5.2e-122 441.8 374 63.6
CsaV3_1G028770 Cucumis sativus L. HOM05D005260 ORTHO05D006390 3.4e-121 439.1 389 62.7
TAR383G0874 Trochodendron aralioides HOM05D005260 ORTHO05D006390 3.4e-121 439.1 380 63.9
Ca_21113_v3 Cicer arietinum L. HOM05D005260 ORTHO05D006390 5.8e-121 438.3 380 64.7
MELO3C010238.2 Cucumis melo HOM05D005260 ORTHO05D006390 7.6e-121 438.0 389 63.0
Psat4g008640 Pisum sativum HOM05D005260 ORTHO05D006390 7.6e-121 438.0 381 64.3
Cc06_g15200 Coffea canephora HOM05D005260 ORTHO05D006390 1.3e-120 437.2 382 66.5
Manes.14G111500 Manihot esculenta HOM05D005260 ORTHO05D006390 4.9e-120 435.3 383 63.2
Sabra06G0142800 Salix brachista HOM05D005260 ORTHO05D006390 3.2e-119 432.6 377 63.1
Sabra18G0092700 Salix brachista HOM05D005260 ORTHO05D006390 3.5e-118 429.1 383 62.9
Actinidia04287 Actinidia chinensis HOM05D005260 ORTHO05D006390 1.0e-117 427.6 366 65.6
Sabra06G0141800 Salix brachista HOM05D005260 ORTHO05D006390 1.0e-117 427.6 378 62.7
Ciclev10008691m.g Citrus clementina HOM05D005260 ORTHO05D006390 3.0e-117 426.0 380 62.9
Lj4g0015138 Lotus japonicus HOM05D005260 ORTHO05D006390 3.0e-117 426.0 377 63.4
ClCG06G015480 Citrullus lanatus HOM05D005260 ORTHO05D006390 1.1e-116 424.1 388 61.6
Thecc.09G033300 Theobroma cacao HOM05D005260 ORTHO05D006390 1.1e-116 424.1 373 64.3
TPR.G9269 Trifolium pratense HOM05D005260 ORTHO05D006390 1.5e-116 423.7 380 62.6
Sc18g0000130 Simmondsia chinensis HOM05D005260 ORTHO05D006390 5.6e-116 421.8 391 62.4
Peaxi162Scf00347g00088 Petunia axillaris HOM05D005260 ORTHO05D006390 2.8e-115 419.5 396 60.6
Sopen07g001450 Solanum pennellii HOM05D005260 ORTHO05D006390 3.6e-115 419.1 395 60.8
Medtr4g131190 Medicago truncatula HOM05D005260 ORTHO05D006390 4.7e-115 418.7 370 62.7
Duzib168G1964 Durio zibethinus HOM05D005260 ORTHO05D006390 6.2e-115 418.3 373 64.1
Solyc07g005340.2 Solanum lycopersicum HOM05D005260 ORTHO05D006390 1.8e-114 416.8 395 60.5
Lsat_1_v5_gn_6_38260 Lactuca sativa HOM05D005260 ORTHO05D006390 4.0e-114 415.6 389 62.5
PGSC0003DMG400003180 Solanum tuberosum HOM05D005260 ORTHO05D006390 4.0e-114 415.6 395 60.8
Nitab4.5_0008157g0020 Nicotiana tabacum HOM05D005260 ORTHO05D006390 8.9e-114 414.5 392 61.0
VMungo1215G1942 Vigna mungo HOM05D005260 ORTHO05D006390 8.9e-114 414.5 372 63.4
CAN.G1116.9 Capsicum annuum HOM05D005260 ORTHO05D006390 3.4e-113 412.5 395 61.0
Gohir.A13G184700 Gossypium hirsutum HOM05D005260 ORTHO05D006390 3.8e-112 409.1 373 63.0
Duzib150G0891 Durio zibethinus HOM05D005260 ORTHO05D006390 4.9e-112 408.7 374 63.1
Sed0012515 Sechium edule HOM05D005260 ORTHO05D006390 8.4e-112 407.9 389 61.4
Nitab4.5_0001201g0060 Nicotiana tabacum HOM05D005260 ORTHO05D006390 1.4e-111 407.1 373 61.1
TWI34G1822 Tripterygium wilfordii HOM05D005260 ORTHO05D006390 3.2e-111 406.0 382 60.2
Gohir.D13G191100 Gossypium hirsutum HOM05D005260 ORTHO05D006390 4.2e-111 405.6 373 62.5
Gorai.013G217000 Gossypium raimondii HOM05D005260 ORTHO05D006390 4.2e-111 405.6 373 62.5
SGA_v2.0_scaffold265G46122 Striga asiatica HOM05D005260 ORTHO05D006390 9.3e-111 404.4 378 61.6
PSO170G6608 Papaver somniferum HOM05D005260 ORTHO05D006390 4.6e-110 402.1 397 60.7
MSTRG.6120 Avicennia marina HOM05D005260 ORTHO05D006390 1.7e-109 400.2 385 59.5
PGR102G1636 Punica granatum HOM05D005260 ORTHO05D006390 5.1e-109 398.7 377 59.2
PSO017G5909 Papaver somniferum HOM05D005260 ORTHO05D006390 6.6e-109 398.3 397 60.2
Oeu051690.1 Olea europaea HOM05D005260 ORTHO05D006390 8.7e-109 397.9 386 60.6
HanXRQChr13g0397631 Helianthus annuus HOM05D005260 ORTHO05D006390 1.1e-108 397.5 396 61.1
Oeu050475.1 Olea europaea HOM05D005260 ORTHO05D006390 1.1e-108 397.5 386 61.1
GSVIVG01023592001 Vitis vinifera HOM05D005260 ORTHO05D006390 1.1e-108 397.5 377 63.1
Migut.J01331 Erythranthe guttata HOM05D005260 ORTHO05D006390 1.4e-106 390.6 385 58.7
Lj7P455T24 Lonicera japonica HOM05D005260 ORTHO05D006390 1.5e-105 387.1 341 64.2
SalBow1G8640 Salvia bowleyana HOM05D005260 ORTHO05D006390 4.9e-104 382.1 384 58.1
ATR0739G050 Amborella trichopoda HOM05D005260 ORTHO05D006390 3.2e-103 379.4 393 56.5
Gorai.006G273400 Gossypium raimondii HOM05D005260 ORTHO05D006390 9.3e-103 377.9 349 61.0
ECA233G0390 Erigeron canadensis HOM05D005260 ORTHO05D006390 1.3e-101 374.0 347 63.1
COL.COLO4_18779 Corchorus olitorius HOM05D005260 ORTHO05D006390 1.1e-100 370.9 373 59.5
MBI14_g37102_MAGBIO Magnolia biondii HOM05D005260 ORTHO05D006390 1.9e-100 370.2 393 56.0
SHI04751 Sapria himalayana HOM05D005260 ORTHO05D006390 4.8e-99 365.5 378 54.2
Atru.chr6.1391 Acer truncatum HOM05D005260 ORTHO05D006390 8.1e-99 364.8 383 57.2
THA.LOC104817828 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 8.1e-99 364.8 375 57.1
Atru.chr7.58 Acer truncatum HOM05D005260 ORTHO05D006390 1.1e-98 364.4 383 57.2
BcaB05g22395 Brassica carinata HOM05D005260 ORTHO05D006390 2.2e-96 356.7 372 57.0
AT5G58020 Arabidopsis thaliana HOM05D005260 ORTHO05D006390 4.9e-96 355.5 376 56.4
AL8G34120 Arabidopsis lyrata HOM05D005260 ORTHO05D006390 1.1e-95 354.4 380 56.6
BcaC04g19916 Brassica carinata HOM05D005260 ORTHO05D006390 1.1e-95 354.4 377 56.2
Cpa.g.sc46.130 Carica papaya HOM05D005260 ORTHO05D006390 1.4e-95 354.0 383 57.4
A10p16150 Brassica napus HOM05D005260 ORTHO05D006390 1.9e-95 353.6 377 56.8
BraA10t43614Z Brassica rapa HOM05D005260 ORTHO05D006390 1.9e-95 353.6 377 56.8
Thhalv10013961m.g Eutrema salsugineum HOM05D005260 ORTHO05D006390 2.4e-95 353.2 376 56.1
C09p49880 Brassica napus HOM05D005260 ORTHO05D006390 3.2e-95 352.8 377 56.0
BolC9t57839H Brassica oleracea HOM05D005260 ORTHO05D006390 4.2e-95 352.4 377 56.0
Sp6g19700 Schrenkiella parvula HOM05D005260 ORTHO05D006390 5.5e-95 352.1 378 55.0
Carub.0008s1857 Capsella rubella HOM05D005260 ORTHO05D006390 9.3e-95 351.3 376 55.1
A02p08050 Brassica napus HOM05D005260 ORTHO05D006390 2.7e-94 349.7 376 55.6
CARHR271830 Cardamine hirsuta HOM05D005260 ORTHO05D006390 2.7e-94 349.7 376 56.6
BolC2t07483H Brassica oleracea HOM05D005260 ORTHO05D006390 2.3e-93 346.7 376 55.9
THA.LOC104817826 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 3.0e-93 346.3 377 54.4
SGA_v2.0_scaffold45G17044 Striga asiatica HOM05D005260 ORTHO05D006390 8.7e-93 344.7 377 54.9
BraA02t05877Z Brassica rapa HOM05D005260 ORTHO05D006390 2.5e-92 343.2 376 55.1
Aqoxy3G00834 Aquilegia oxysepala HOM05D005260 ORTHO05D006390 5.6e-92 342.0 376 55.9
Os06g0183900 Oryza sativa ssp. japonica HOM05D005260 ORTHO05D006390 9.6e-92 341.3 374 54.3
Ah.11g045050 Amaranthus hybridus HOM05D005260 ORTHO05D006390 8.1e-91 338.2 380 54.5
C02p13690 Brassica napus HOM05D005260 ORTHO05D006390 1.8e-90 337.0 376 55.1
DCAR_020883 Daucus carota HOM05D005260 ORTHO05D006390 4.5e-89 332.4 282 66.0
Aa31LG3G13860 Aethionema arabicum HOM05D005260 ORTHO05D006390 1.0e-88 331.3 376 53.7
Dinv42879 Davidia involucrata HOM05D005260 ORTHO05D006390 1.0e-88 331.3 355 57.2
Dinv43221 Davidia involucrata HOM05D005260 ORTHO05D006390 1.0e-88 331.3 355 57.2
EL10Ac8g18850 Beta vulgaris HOM05D005260 ORTHO05D006390 2.7e-86 323.2 397 50.4
Pp3c14_10930 Physcomitrium patens HOM05D005260 ORTHO05D006390 5.1e-85 318.9 365 51.5
SEGI_13576 Sequoiadendron giganteum HOM05D005260 ORTHO05D006390 7.4e-84 315.1 390 51.5
CiPaw.16G114800 Carya illinoinensis HOM05D005260 ORTHO05D006390 6.5e-80 302.0 362 53.0
Mapoly0043s0023 Marchantia polymorpha HOM05D005260 ORTHO05D006390 6.5e-80 302.0 406 47.0
AagrBONN_evm.TU.Sc2ySwM_228.4055 Anthoceros agrestis HOM05D005260 ORTHO05D006390 2.5e-79 300.1 308 52.6
Gohir.D09G249000 Gossypium hirsutum HOM05D005260 ORTHO05D006390 3.5e-78 296.2 287 58.2
SMO307G0072 Selaginella moellendorffii HOM05D005260 ORTHO05D006390 3.0e-77 293.1 327 51.1
AUR62031434 Chenopodium quinoa HOM05D005260 ORTHO05D006390 2.4e-74 283.5 320 52.2
CBR_g44540 Chara braunii HOM05D005260 ORTHO05D006390 1.1e-66 258.1 359 45.7
AUR62021106 Chenopodium quinoa HOM05D005260 ORTHO05D006390 6.9e-66 255.4 257 53.7
Actinidia38337 Actinidia chinensis HOM05D005260 ORTHO05D006390 2.9e-64 250.0 169 73.4
Gohir.D07G030400 Gossypium hirsutum HOM05D005260 ORTHO05D006390 3.1e-58 229.9 294 49.7
Gorai.001G031600 Gossypium raimondii HOM05D005260 ORTHO05D006390 7.0e-58 228.8 294 49.3
Lalb_Chr12g0198621 Lupinus albus HOM05D005260 ORTHO05D006390 5.9e-49 199.1 212 60.8
CDE02G0414 Ceratophyllum demersum HOM05D005260 ORTHO05D006390 8.0e-46 188.7 354 41.8
unitig_0.g2819 Utricularia gibba HOM05D005260 ORTHO05D006390 5.2e-45 186.0 222 50.5
HPP92_018747 Vanilla planifolia HOM05D005260 ORTHO05D006390 8.8e-45 185.3 209 53.6
Cre03.g150650 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 1.1e-34 151.8 274 37.6
PRCOL_00003864 Prasinoderma coloniale HOM05D005260 ORTHO05D006390 7.3e-31 139.0 281 36.7
TAR625G0635 Trochodendron aralioides HOM05D005260 ORTHO05D006390 7.3e-31 139.0 143 62.2
HPP92_018748 Vanilla planifolia HOM05D005260 ORTHO05D006390 8.9e-29 132.1 128 56.2
AagrBONN_evm.TU.Sc2ySwM_344.4069 Anthoceros agrestis HOM05D005260 ORTHO05D006390 2.0e-28 131.0 176 48.3
HanXRQChr09g0262911 Helianthus annuus HOM05D005260 ORTHO05D006390 2.6e-28 130.6 82 78.0
MELO3C004727.2 Cucumis melo HOM05D005260 ORTHO05D006390 5.4e-26 122.9 83 73.5
Atru.chr13.1961 Acer truncatum HOM05D005260 ORTHO05D006390 9.5e-23 112.1 168 48.2
ATR0579G027 Amborella trichopoda HOM05D005260 ORTHO05D006390 4.4e-20 103.2 119 52.1
Zm00001eb158280 Zea mays HOM05D005260 ORTHO05D006390 6.6e-16 89.4 93 49.5
MCO05G557 Micromonas commoda HOM05D005260 ORTHO05D006390 5.6e-15 86.3 211 27.0
ClCG06G012260 Citrullus lanatus HOM05D005260 ORTHO05D006390 8.9e-13 79.0 109 43.1
BolC3t13905H Brassica oleracea HOM05D005260 ORTHO05D006390 5.4e-10 69.7 52 75.0
Cfa026666 Carpinus fangiana HOM05D005260 ORTHO05D006390 5.1e-08 63.2 243 25.9
CiPaw.12G098000 Carya illinoinensis HOM05D003547 ORTHO05D004236 6.6e-08 62.8 38 71.1
Gorai.011G083100 Gossypium raimondii HOM05D005260 ORTHO05D006390 6.6e-08 62.8 70 55.7
CBR_g37538 Chara braunii HOM05D005260 ORTHO05D006390 1.2e-06 58.5 78 38.5


User provided reference genes

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