Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g00220 Fragaria vesca HOM05D007315 ORTHO05D008940 0.0e+00 1129.4 577 100.0
FAN28G1745 Fragaria x ananassa HOM05D007315 ORTHO05D008940 0.0e+00 1099.3 604 94.5
FAN23G0376 Fragaria x ananassa HOM05D007315 ORTHO05D008940 4.2e-304 1047.3 618 87.7
FAN26G2088 Fragaria x ananassa HOM05D007315 ORTHO05D008940 9.6e-301 1036.2 619 88.5
FAN26G2097 Fragaria x ananassa HOM05D007315 ORTHO05D008940 9.6e-301 1036.2 619 88.5
RcHm_v2.0_Chr2g0084511 Rosa chinensis HOM05D007315 ORTHO05D008940 4.6e-234 814.7 657 71.5
Prupe.7G270200 Prunus persica HOM05D007315 ORTHO05D008940 7.0e-150 535.0 688 53.5
MD15G1142800 Malus domestica HOM05D007315 ORTHO05D008940 1.7e-140 503.8 684 49.0
QL10p064604 Quercus lobata HOM05D007315 ORTHO05D008940 1.8e-126 457.2 706 45.5
Haze_11126 Corylus avellana HOM05D007315 ORTHO05D008940 1.3e-124 451.1 705 44.3
QL10p065726 Quercus lobata HOM05D007315 ORTHO05D008940 1.7e-124 450.7 703 45.8
Cfa008519 Carpinus fangiana HOM05D007315 ORTHO05D008940 8.0e-122 441.8 704 43.3
CANSAT78G2341 Cannabis sativa HOM05D007315 ORTHO05D008940 8.9e-121 438.3 686 45.6
Ciclev10019166m.g Citrus clementina HOM05D007315 ORTHO05D008940 6.8e-113 412.1 648 44.0
CiPaw.02G125100 Carya illinoinensis HOM05D007315 ORTHO05D008940 3.2e-110 403.3 688 42.2
MD00G1086900 Malus domestica HOM05D007315 ORTHO05D008940 1.0e-100 371.7 541 48.4
TWI15G1252 Tripterygium wilfordii HOM05D007315 ORTHO05D008940 5.1e-100 369.4 621 42.8
Potri.007G145400 Populus trichocarpa HOM05D007315 ORTHO05D008940 1.8e-97 360.9 670 41.5
Atru.chr3.1974 Acer truncatum HOM05D007315 ORTHO05D008940 4.0e-97 359.8 616 42.2
CiPaw.01G202000 Carya illinoinensis HOM05D007315 ORTHO05D008940 2.1e-93 347.4 653 40.7
GSVIVG01038254001 Vitis vinifera HOM05D007315 ORTHO05D008940 1.7e-92 344.4 630 41.6
Sabra07G0115600 Salix brachista HOM05D007315 ORTHO05D008940 3.0e-92 343.6 702 39.9
Potri.017G002200 Populus trichocarpa HOM05D007315 ORTHO05D008940 1.1e-89 335.1 658 40.0
Manes.05G207100 Manihot esculenta HOM05D007315 ORTHO05D008940 3.1e-89 333.6 660 40.6
ClCG06G009750 Citrullus lanatus HOM05D007315 ORTHO05D008940 2.1e-85 320.9 631 39.8
Dinv33248 Davidia involucrata HOM05D007315 ORTHO05D008940 3.5e-85 320.1 643 40.4
Sabra17G0006200 Salix brachista HOM05D007315 ORTHO05D008940 3.0e-84 317.0 635 40.0
Cpa.g.sc151.10 Carica papaya HOM05D007315 ORTHO05D008940 2.5e-83 313.9 605 39.3
Sed0008861 Sechium edule HOM05D007315 ORTHO05D008940 2.1e-82 310.8 618 39.8
MELO3C020340.2 Cucumis melo HOM05D007315 ORTHO05D008940 1.8e-81 307.8 628 39.0
CsaV3_2G011220 Cucumis sativus L. HOM05D007315 ORTHO05D008940 1.8e-81 307.8 626 39.1
Duzib128G0490 Durio zibethinus HOM05D007315 ORTHO05D008940 1.4e-78 298.1 630 37.9
Thecc.05G001400 Theobroma cacao HOM05D007315 ORTHO05D008940 6.0e-77 292.7 617 37.6
Eucgr.A00422 Eucalyptus grandis HOM05D007315 ORTHO05D008940 7.9e-77 292.4 626 37.4
Nn1g09432 Nelumbo nucifera HOM05D007315 ORTHO05D008940 5.1e-76 289.7 700 35.9
TAR362G0103 Trochodendron aralioides HOM05D007315 ORTHO05D008940 3.3e-75 287.0 656 34.3
CSS0005699 Camellia sinensis var. sinensis HOM05D007315 ORTHO05D008940 1.4e-73 281.6 495 40.6
Lalb_Chr02g0150561 Lupinus albus HOM05D007315 ORTHO05D008940 2.4e-73 280.8 681 36.1
Glyma.10G188000 Glycine max HOM05D007315 ORTHO05D008940 9.0e-73 278.9 698 36.8
Rhsim09G0003400 Rhododendron simsii HOM05D007315 ORTHO05D008940 9.0e-73 278.9 633 36.8
CSS0008240 Camellia sinensis var. sinensis HOM05D007315 ORTHO05D008940 1.3e-68 265.0 468 40.8
Glyma.20G202800 Glycine max HOM05D007315 ORTHO05D008940 1.3e-68 265.0 675 36.1
DCAR_027494 Daucus carota HOM05D007315 ORTHO05D008940 1.8e-68 264.6 655 35.4
arahy.Tifrunner.gnm1.ann1.BRX18T Arachis hypogaea HOM05D007315 ORTHO05D008940 4.3e-67 260.0 646 35.6
EL10Ac3g06171 Beta vulgaris HOM05D007315 ORTHO05D008940 4.8e-66 256.5 638 34.5
arahy.Tifrunner.gnm1.ann1.K0K7GF Arachis hypogaea HOM05D007315 ORTHO05D008940 2.4e-65 254.2 680 34.9
AUR62002486 Chenopodium quinoa HOM05D007315 ORTHO05D008940 6.9e-65 252.7 607 35.4
Gohir.D10G003900 Gossypium hirsutum HOM05D007315 ORTHO05D008940 7.6e-64 249.2 693 34.2
Gorai.011G004300 Gossypium raimondii HOM05D007315 ORTHO05D008940 1.0e-63 248.8 622 36.5
Lj5g0028022 Lotus japonicus HOM05D007315 ORTHO05D008940 3.8e-63 246.9 655 34.7
Peaxi162Scf00057g00225 Petunia axillaris HOM05D007315 ORTHO05D008940 2.5e-62 244.2 612 35.5
Gohir.A10G003901 Gossypium hirsutum HOM05D007315 ORTHO05D008940 4.2e-62 243.4 550 36.5
Ca_09817_v3 Cicer arietinum L. HOM05D007315 ORTHO05D008940 7.1e-62 242.7 664 34.5
VMungo0720G0938 Vigna mungo HOM05D007315 ORTHO05D008940 1.2e-61 241.9 661 33.7
PGR042G2132 Punica granatum HOM05D007315 ORTHO05D008940 4.6e-61 240.0 673 32.5
Phvul.007G128900 Phaseolus vulgaris HOM05D007315 ORTHO05D008940 1.8e-60 238.0 649 35.3
TPR.G26430 Trifolium pratense HOM05D007315 ORTHO05D008940 2.3e-60 237.7 684 33.9
Nitab4.5_0002789g0030 Nicotiana tabacum HOM05D007315 ORTHO05D008940 3.9e-60 236.9 450 38.9
PGSC0003DMG400020383 Solanum tuberosum HOM05D007315 ORTHO05D008940 3.9e-60 236.9 639 33.5
Medtr1g073930 Medicago truncatula HOM05D007315 ORTHO05D008940 1.1e-59 235.3 594 34.8
COL.COLO4_23477 Corchorus olitorius HOM05D007315 ORTHO05D008940 1.5e-59 235.0 474 38.4
Atru.chr3.1981 Acer truncatum HOM05D007315 ORTHO05D008940 1.9e-59 234.6 435 40.2
Solyc12g017970.1 Solanum lycopersicum HOM05D007315 ORTHO05D008940 2.5e-59 234.2 621 34.0
Nitab4.5_0000160g0040 Nicotiana tabacum HOM05D007315 ORTHO05D008940 1.3e-58 231.9 618 34.1
AUR62023706 Chenopodium quinoa HOM05D007315 ORTHO05D008940 2.2e-58 231.1 618 34.8
Sopen12g009190 Solanum pennellii HOM05D007315 ORTHO05D008940 1.4e-57 228.4 627 34.3
Psat6g133000 Pisum sativum HOM05D007315 ORTHO05D008940 1.5e-56 224.9 641 33.7
QL10p064445 Quercus lobata HOM05D007315 ORTHO05D008940 1.5e-56 224.9 371 45.6
AT2G43990 Arabidopsis thaliana HOM05D007315 ORTHO05D008940 2.0e-51 208.0 648 31.8
Oeu018063.1 Olea europaea HOM05D007315 ORTHO05D008940 1.1e-49 202.2 474 34.2
PSO732G0261 Papaver somniferum HOM05D007315 ORTHO05D008940 4.1e-49 200.3 480 35.0
Carub.0004s2655 Capsella rubella HOM05D007315 ORTHO05D008940 1.2e-48 198.7 674 30.7
Hma1.2p1_1085F.1_g255400 Hydrangea macrophylla HOM05D007315 ORTHO05D008940 7.7e-48 196.1 466 35.6
Ah.07g203260 Amaranthus hybridus HOM05D007315 ORTHO05D008940 2.9e-47 194.1 554 34.5
CARHR139160 Cardamine hirsuta HOM05D007315 ORTHO05D008940 2.5e-46 191.0 631 31.4
THA.LOC104802348 Tarenaya hassleriana HOM05D007315 ORTHO05D008940 2.5e-46 191.0 667 31.6
AL4G42870 Arabidopsis lyrata HOM05D007315 ORTHO05D008940 3.6e-45 187.2 646 30.7
SalBow3G0669 Salvia bowleyana HOM05D007315 ORTHO05D008940 7.9e-45 186.0 606 33.2
ECA238G3268 Erigeron canadensis HOM05D007315 ORTHO05D008940 1.4e-44 185.3 448 34.6
Thhalv10001359m.g Eutrema salsugineum HOM05D007315 ORTHO05D008940 6.7e-44 183.0 659 31.3
Sp4g26080 Schrenkiella parvula HOM05D007315 ORTHO05D008940 1.5e-43 181.8 632 30.7
Ah.13g073150 Amaranthus hybridus HOM05D007315 ORTHO05D008940 5.7e-43 179.9 589 31.4
THA.LOC104804323 Tarenaya hassleriana HOM05D007315 ORTHO05D008940 1.7e-42 178.3 659 30.7
MBI07_g42068_MAGBIO Magnolia biondii HOM05D007315 ORTHO05D008940 4.5e-40 170.2 524 33.2
HanXRQChr14g0438301 Helianthus annuus HOM05D007315 ORTHO05D008940 1.4e-38 165.2 466 32.4
MSTRG.24547 Avicennia marina HOM05D007315 ORTHO05D008940 4.2e-38 163.7 713 27.3
Aqoxy5G03722 Aquilegia oxysepala HOM05D007315 ORTHO05D008940 1.0e-36 159.1 649 29.1
Sc19g0002390 Simmondsia chinensis HOM05D007315 ORTHO05D008940 1.5e-35 155.2 625 28.8
A05p04140 Brassica napus HOM05D007315 ORTHO05D008940 4.4e-35 153.7 578 30.3
Migut.N03024 Erythranthe guttata HOM05D007315 ORTHO05D008940 2.2e-34 151.4 527 31.7
BraA05t19400Z Brassica rapa HOM05D007315 ORTHO05D008940 6.3e-34 149.8 602 29.9
COL.COLO4_20289 Corchorus olitorius HOM05D007315 ORTHO05D008940 1.1e-33 149.1 286 38.8
BolC4t22121H Brassica oleracea HOM05D007315 ORTHO05D008940 1.0e-31 142.5 575 29.9
CDE04G0399 Ceratophyllum demersum HOM05D007315 ORTHO05D008940 1.3e-31 142.1 457 29.3
C04p04910 Brassica napus HOM05D007315 ORTHO05D008940 1.2e-29 135.6 513 30.0
SGA_v2.0_scaffold25G11016 Striga asiatica HOM05D007315 ORTHO05D008940 1.8e-28 131.7 574 28.7
CDE07G0865 Ceratophyllum demersum HOM05D007315 ORTHO05D008940 3.0e-28 131.0 631 27.3
SGA_v2.0_scaffold19G08894 Striga asiatica HOM05D007315 ORTHO05D008940 5.9e-24 116.7 628 27.2
BcaC02g12347 Brassica carinata HOM05D007315 ORTHO05D008940 1.1e-22 112.5 499 27.5
Duzib093G0367 Durio zibethinus HOM05D007315 ORTHO05D008940 1.5e-22 112.1 423 30.7
HPP92_007592 Vanilla planifolia HOM05D007315 ORTHO05D008940 2.8e-18 97.8 487 27.1
Zm00001eb434100 Zea mays HOM05D019859 ORTHO05D008940 6.3e-18 96.7 678 26.4
ATR0743G232 Amborella trichopoda HOM05D007315 ORTHO05D008940 1.0e-15 89.4 216 35.6
Os11g0247500 Oryza sativa ssp. japonica HOM05D019859 ORTHO05D008940 2.5e-14 84.7 610 24.6
Actinidia39246 Actinidia chinensis HOM05D007315 ORTHO05D008940 2.3e-12 78.2 308 31.5
unitig_578.g16246 Utricularia gibba HOM05D007315 ORTHO05D008940 4.0e-12 77.4 127 43.3
Zm00001eb136730 Zea mays HOM05D019859 ORTHO05D008940 1.7e-10 72.0 397 27.0


User provided reference genes

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