Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g00160 Fragaria vesca HOM05D005420 ORTHO05D006524 5.1e-151 537.7 276 100.0
FAN28G0609 Fragaria x ananassa HOM05D005420 ORTHO05D006524 5.1e-151 537.7 276 100.0
FAN26G3138 Fragaria x ananassa HOM05D005420 ORTHO05D006524 2.8e-149 531.9 276 98.6
FAN23G1410 Fragaria x ananassa HOM05D005420 ORTHO05D006524 1.5e-147 526.2 276 98.2
RcHm_v2.0_Chr2g0084451 Rosa chinensis HOM05D005420 ORTHO05D006524 5.0e-130 468.0 283 88.7
Prupe.7G269700 Prunus persica HOM05D005420 ORTHO05D006524 5.0e-114 414.8 282 80.1
MD00G1087500 Malus domestica HOM05D005420 ORTHO05D006524 4.3e-113 411.8 281 78.3
MD15G1143300 Malus domestica HOM05D005420 ORTHO05D006524 9.8e-110 400.6 296 76.7
Ciclev10012405m.g Citrus clementina HOM05D005420 ORTHO05D006524 5.4e-108 394.8 287 72.8
QL10p064332 Quercus lobata HOM05D005420 ORTHO05D006524 2.3e-106 389.4 263 78.3
Duzib177G0155 Durio zibethinus HOM05D005420 ORTHO05D006524 1.5e-105 386.7 278 73.7
Atru.chr12.1712 Acer truncatum HOM05D005420 ORTHO05D006524 5.6e-105 384.8 221 86.9
Thecc.05G186000 Theobroma cacao HOM05D005420 ORTHO05D006524 2.1e-104 382.9 276 73.9
Dinv33245 Davidia involucrata HOM05D005420 ORTHO05D006524 2.8e-104 382.5 221 87.8
VMungo1215G3385 Vigna mungo HOM05D005420 ORTHO05D006524 3.6e-104 382.1 291 72.9
CiPaw.02G124600 Carya illinoinensis HOM05D005420 ORTHO05D006524 4.7e-104 381.7 271 76.4
Glyma.07G273700 Glycine max HOM05D005420 ORTHO05D006524 6.2e-104 381.3 224 86.6
CSS0017727 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 8.0e-104 380.9 224 86.2
TAR365G1242 Trochodendron aralioides HOM05D005420 ORTHO05D006524 1.8e-103 379.8 283 72.8
CANSAT56G1087 Cannabis sativa HOM05D005420 ORTHO05D006524 2.3e-103 379.4 287 74.2
CSS0022736 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 3.1e-103 379.0 233 83.7
Glyma.17G000800 Glycine max HOM05D005420 ORTHO05D006524 8.9e-103 377.5 222 86.0
TAR636G0539 Trochodendron aralioides HOM05D005420 ORTHO05D006524 1.2e-102 377.1 286 72.7
MSTRG.24552 Avicennia marina HOM05D005420 ORTHO05D006524 3.4e-102 375.6 274 73.4
Cfa008513 Carpinus fangiana HOM05D005420 ORTHO05D006524 3.4e-102 375.6 214 88.3
Eucgr.H01455 Eucalyptus grandis HOM05D005420 ORTHO05D006524 3.4e-102 375.6 289 70.6
Gohir.A02G106300 Gossypium hirsutum HOM05D005420 ORTHO05D006524 4.4e-102 375.2 278 71.2
arahy.Tifrunner.gnm1.ann1.D6NWCJ Arachis hypogaea HOM05D005420 ORTHO05D006524 5.8e-102 374.8 233 83.7
arahy.Tifrunner.gnm1.ann1.EMGW5K Arachis hypogaea HOM05D005420 ORTHO05D006524 5.8e-102 374.8 233 83.7
Potri.013G084300 Populus trichocarpa HOM05D005420 ORTHO05D006524 2.2e-101 372.9 266 72.9
ClCG09G014850 Citrullus lanatus HOM05D005420 ORTHO05D006524 2.9e-101 372.5 264 76.9
Phvul.003G074600 Phaseolus vulgaris HOM05D005420 ORTHO05D006524 3.7e-101 372.1 283 71.4
Lj4g0016379 Lotus japonicus HOM05D005420 ORTHO05D006524 4.9e-101 371.7 257 76.3
Manes.12G003300 Manihot esculenta HOM05D005420 ORTHO05D006524 4.9e-101 371.7 277 72.9
SalBow3G4646 Salvia bowleyana HOM05D005420 ORTHO05D006524 8.3e-101 370.9 274 74.1
Cc03_g15990 Coffea canephora HOM05D005420 ORTHO05D006524 1.4e-100 370.2 287 70.0
PSO732G0217 Papaver somniferum HOM05D005420 ORTHO05D006524 1.4e-100 370.2 285 71.6
Ah.07g203200 Amaranthus hybridus HOM05D005420 ORTHO05D006524 1.9e-100 369.8 266 75.6
Gohir.D03G071700 Gossypium hirsutum HOM05D005420 ORTHO05D006524 2.4e-100 369.4 278 70.9
CsaV3_7G022350 Cucumis sativus L. HOM05D005420 ORTHO05D006524 3.2e-100 369.0 255 78.0
TWI36G0345 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 5.4e-100 368.2 214 87.4
CiPaw.01G201600 Carya illinoinensis HOM05D005420 ORTHO05D006524 7.0e-100 367.9 214 86.4
Gorai.003G088300 Gossypium raimondii HOM05D005420 ORTHO05D006524 9.2e-100 367.5 279 70.6
PSO675G2924 Papaver somniferum HOM05D005420 ORTHO05D006524 2.0e-99 366.3 285 70.9
MBI07_g10354_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 2.7e-99 365.9 280 70.0
EL10Ac3g06165 Beta vulgaris HOM05D005420 ORTHO05D006524 3.5e-99 365.5 287 72.5
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 6.0e-99 364.8 286 72.0
PGR119G0486 Punica granatum HOM05D005420 ORTHO05D006524 2.3e-98 362.8 197 93.4
Sabra13G0078900 Salix brachista HOM05D005420 ORTHO05D006524 3.0e-98 362.5 276 69.6
Thhalv10001571m.g Eutrema salsugineum HOM05D005420 ORTHO05D006524 3.9e-98 362.1 292 71.6
Rhsim09G0003700 Rhododendron simsii HOM05D005420 ORTHO05D006524 5.0e-98 361.7 224 83.5
Solyc08g015620.3 Solanum lycopersicum HOM05D005420 ORTHO05D006524 5.0e-98 361.7 229 81.7
Sopen08g005610 Solanum pennellii HOM05D005420 ORTHO05D006524 5.0e-98 361.7 229 81.7
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 8.6e-98 360.9 288 71.2
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 8.6e-98 360.9 288 71.2
DCAR_005460 Daucus carota HOM05D005420 ORTHO05D006524 1.5e-97 360.1 262 76.3
Peaxi162Scf01205g00032 Petunia axillaris HOM05D005420 ORTHO05D006524 1.5e-97 360.1 260 75.4
Nitab4.5_0008205g0010 Nicotiana tabacum HOM05D005420 ORTHO05D006524 1.9e-97 359.8 284 71.5
Sed0010932 Sechium edule HOM05D005420 ORTHO05D006524 1.9e-97 359.8 282 70.9
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 1.9e-97 359.8 228 82.0
Actinidia34566 Actinidia chinensis HOM05D005420 ORTHO05D006524 3.3e-97 359.0 273 71.8
Cpa.g.sc151.6 Carica papaya HOM05D005420 ORTHO05D006524 3.3e-97 359.0 202 90.6
ECA248G1232 Erigeron canadensis HOM05D005420 ORTHO05D006524 3.3e-97 359.0 230 80.0
Migut.G00921 Erythranthe guttata HOM05D005420 ORTHO05D006524 3.3e-97 359.0 242 77.7
HanXRQChr11g0343501 Helianthus annuus HOM05D005420 ORTHO05D006524 5.6e-97 358.2 268 72.8
AUR62023710 Chenopodium quinoa HOM05D005420 ORTHO05D006524 7.3e-97 357.8 214 86.0
GSVIVG01026140001 Vitis vinifera HOM05D005420 ORTHO05D006524 7.3e-97 357.8 214 83.6
Aqoxy1G01859 Aquilegia oxysepala HOM05D005420 ORTHO05D006524 9.5e-97 357.5 294 68.4
Carub.0004s2651 Capsella rubella HOM05D005420 ORTHO05D006524 9.5e-97 357.5 286 72.7
AT2G43945 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 1.2e-96 357.1 290 69.3
GSVIVG01038249001 Vitis vinifera HOM05D005420 ORTHO05D006524 1.2e-96 357.1 214 85.0
Lsat_1_v5_gn_1_76981 Lactuca sativa HOM05D005420 ORTHO05D006524 1.6e-96 356.7 214 84.1
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 2.1e-96 356.3 285 71.2
Psat4g001320 Pisum sativum HOM05D005420 ORTHO05D006524 2.8e-96 355.9 225 81.3
AL4G42820 Arabidopsis lyrata HOM05D005420 ORTHO05D006524 3.6e-96 355.5 294 68.4
AUR62002482 Chenopodium quinoa HOM05D005420 ORTHO05D006524 3.6e-96 355.5 214 85.5
Lj6C285T2 Lonicera japonica HOM05D005420 ORTHO05D006524 3.6e-96 355.5 197 91.9
Nitab4.5_0000013g0040 Nicotiana tabacum HOM05D005420 ORTHO05D006524 6.2e-96 354.8 270 72.6
TWI36G1305 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 8.1e-96 354.4 267 73.4
CARHR139120 Cardamine hirsuta HOM05D005420 ORTHO05D006524 4.0e-95 352.1 213 86.4
HanXRQChr01g0023651 Helianthus annuus HOM05D005420 ORTHO05D006524 4.0e-95 352.1 264 72.7
Actinidia18399 Actinidia chinensis HOM05D005420 ORTHO05D006524 1.2e-94 350.5 274 70.8
Aa31LG1G25640 Aethionema arabicum HOM05D005420 ORTHO05D006524 2.6e-94 349.4 192 92.7
A05p04100 Brassica napus HOM05D005420 ORTHO05D006524 2.6e-94 349.4 287 69.7
Duzib128G1088 Durio zibethinus HOM05D005420 ORTHO05D006524 2.6e-94 349.4 197 89.8
ATR0743G098 Amborella trichopoda HOM05D005420 ORTHO05D006524 3.4e-94 349.0 280 67.5
BraA05t19397Z Brassica rapa HOM05D005420 ORTHO05D006524 3.4e-94 349.0 286 68.9
BcaC02g12350 Brassica carinata HOM05D005420 ORTHO05D006524 5.8e-94 348.2 289 68.5
C04p04880 Brassica napus HOM05D005420 ORTHO05D006524 7.5e-94 347.8 289 68.5
CDE09G0694 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 9.9e-94 347.4 285 67.0
Carub.0005s2660 Capsella rubella HOM05D005420 ORTHO05D006524 1.3e-93 347.1 292 68.5
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 8.3e-93 344.4 205 85.9
THA.LOC104804283 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 8.3e-93 344.4 230 80.0
BcaB02g08884 Brassica carinata HOM05D005420 ORTHO05D006524 3.2e-92 342.4 216 83.3
BolC4t22118H Brassica oleracea HOM05D005420 ORTHO05D006524 3.2e-92 342.4 286 69.6
THA.LOC104802345 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 9.2e-92 340.9 299 67.9
unitig_699.g19464 Utricularia gibba HOM05D005420 ORTHO05D006524 9.2e-92 340.9 193 88.1
SGA_v2.0_scaffold12G06218 Striga asiatica HOM05D005420 ORTHO05D006524 1.2e-91 340.5 216 80.6
Aa31LG10G14100 Aethionema arabicum HOM05D005420 ORTHO05D006524 2.1e-91 339.7 287 69.0
HPP92_024700 Vanilla planifolia HOM05D005420 ORTHO05D006524 2.1e-91 339.7 212 80.2
unitig_27.g25143 Utricularia gibba HOM05D005420 ORTHO05D006524 7.8e-91 337.8 277 66.8
Sp4g26040 Schrenkiella parvula HOM05D005420 ORTHO05D006524 2.3e-90 336.3 278 69.1
Os01g0338600 Oryza sativa ssp. japonica HOM05D005420 ORTHO05D006524 3.0e-90 335.9 220 77.3
AT3G59870 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 3.3e-89 332.4 296 66.6
Zm00001eb159810 Zea mays HOM05D005420 ORTHO05D006524 3.1e-87 325.9 214 78.5
Mapoly0136s0029 Marchantia polymorpha HOM05D005420 ORTHO05D006524 1.9e-84 316.6 187 86.6
Pp3c8_21410 Physcomitrium patens HOM05D005420 ORTHO05D006524 5.4e-84 315.1 217 72.8
SMO367G0538 Selaginella moellendorffii HOM05D005420 ORTHO05D006524 2.7e-83 312.8 187 82.9
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 4.6e-83 312.0 344 53.5
Dinv24753 Davidia involucrata HOM05D005420 ORTHO05D006524 7.8e-83 311.2 222 75.7
Pp3c24_16460 Physcomitrium patens HOM05D005420 ORTHO05D006524 3.0e-82 309.3 187 81.8
SEGI_26827 Sequoiadendron giganteum HOM05D005420 ORTHO05D006524 3.9e-82 308.9 206 78.2
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 1.5e-81 307.0 239 71.1
Nn7g37463 Nelumbo nucifera HOM05D005420 ORTHO05D006524 4.4e-78 295.4 230 71.3
Manes.13G003200 Manihot esculenta HOM05D005420 ORTHO05D006524 5.4e-76 288.5 157 92.4
Migut.N03031 Erythranthe guttata HOM05D005420 ORTHO05D006524 9.3e-76 287.7 271 63.5
Sc25g0003040 Simmondsia chinensis HOM05D005420 ORTHO05D006524 2.7e-75 286.2 189 77.8
Nn3g18334 Nelumbo nucifera HOM05D005420 ORTHO05D006524 1.1e-71 274.2 246 65.4
Hund22588 Selenicereus undatus HOM05D005420 ORTHO05D006524 2.0e-70 270.0 234 68.4
Medtr4g134910 Medicago truncatula HOM05D005420 ORTHO05D006524 9.3e-68 261.2 156 87.2
Lalb_Chr18g0044961 Lupinus albus HOM05D005420 ORTHO05D006524 2.3e-66 256.5 134 96.3
MCO05G102 Micromonas commoda HOM05D005420 ORTHO05D006524 2.1e-64 250.0 160 75.6
Cre16.g676450 Chlamydomonas reinhardtii HOM05D005420 ORTHO05D006524 1.2e-62 244.2 192 65.1
Zm00001eb356860 Zea mays HOM05D005420 ORTHO05D006524 1.9e-60 236.9 246 56.1
Atru.chr12.1711 Acer truncatum HOM05D005420 ORTHO05D006524 3.2e-60 236.1 191 69.6
Oeu022910.1 Olea europaea HOM05D005420 ORTHO05D006524 3.2e-60 236.1 133 90.2
Ca_13540_v3 Cicer arietinum L. HOM05D005420 ORTHO05D006524 4.2e-60 235.7 209 65.6
PRCOL_00006877 Prasinoderma coloniale HOM05D005420 ORTHO05D006524 2.1e-59 233.4 160 70.6
AagrBONN_evm.TU.Sc2ySwM_228.1821 Anthoceros agrestis HOM05D005420 ORTHO05D006524 3.1e-47 193.0 140 73.6
Sed0016168 Sechium edule HOM05D005420 ORTHO05D006524 2.2e-40 170.2 90 96.7
MBI07_g42072_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 3.1e-39 166.4 89 93.3
Eucgr.L00810 Eucalyptus grandis HOM05D005420 ORTHO05D006524 3.6e-35 152.9 174 52.3
CDE02G3676 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 2.3e-34 150.2 163 53.4
Pp3c20_1670 Physcomitrium patens HOM05D005420 ORTHO05D006524 1.3e-32 144.4 160 49.4
Eucgr.H01440 Eucalyptus grandis HOM05D005420 ORTHO05D006524 3.7e-32 142.9 173 50.9
Lsat_1_v5_gn_1_75001 Lactuca sativa HOM05D005420 ORTHO05D006524 3.7e-24 116.3 78 71.8
MSTRG.9265 Avicennia marina HOM05D005420 ORTHO05D006524 7.0e-23 112.1 86 67.4
Lsat_1_v5_gn_5_160100 Lactuca sativa HOM05D005420 ORTHO05D006524 1.6e-22 110.9 78 67.9
CBR_g10867 Chara braunii HOM05D005420 ORTHO05D006524 5.7e-17 92.4 140 42.1
Sed0003231 Sechium edule HOM05D005420 ORTHO05D006524 3.2e-12 76.6 135 40.7
Lalb_Chr18g0044971 Lupinus albus HOM05D005420 ORTHO05D006524 4.4e-09 66.2 120 40.0


User provided reference genes

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