Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 6.6e-117 424.1 219 100.0
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 1.2e-105 386.7 213 95.8
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 1.9e-103 379.4 243 85.2
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 4.0e-90 335.1 223 83.4
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 4.0e-90 335.1 223 83.4
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 4.4e-89 331.6 218 83.9
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 8.4e-88 327.4 236 77.1
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 6.9e-82 307.8 236 75.0
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 2.3e-77 292.7 233 68.7
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 3.9e-77 292.0 203 74.9
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 2.8e-75 285.8 234 69.2
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 1.4e-74 283.5 190 77.9
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 1.4e-74 283.5 216 69.9
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 3.1e-74 282.3 186 79.0
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 4.0e-74 282.0 222 69.8
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 6.9e-74 281.2 209 71.8
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 9.0e-74 280.8 194 75.8
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 1.2e-73 280.4 166 84.9
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 1.5e-73 280.0 193 75.1
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 1.5e-73 280.0 166 83.7
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 2.0e-73 279.6 167 83.2
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 2.6e-73 279.3 207 72.5
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 3.4e-73 278.9 226 70.4
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 7.6e-73 277.7 200 74.0
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 9.9e-73 277.3 191 76.4
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 9.9e-73 277.3 218 70.2
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 1.3e-72 276.9 183 78.1
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 1.3e-72 276.9 198 76.3
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 1.3e-72 276.9 202 71.3
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 1.7e-72 276.6 190 76.3
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 2.9e-72 275.8 202 72.3
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 2.9e-72 275.8 202 72.3
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 8.4e-72 274.2 171 77.8
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 1.1e-71 273.9 183 76.5
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 1.4e-71 273.5 182 78.0
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 1.4e-71 273.5 182 76.9
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 1.9e-71 273.1 191 74.9
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 2.4e-71 272.7 202 71.3
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 2.4e-71 272.7 163 83.4
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 3.2e-71 272.3 193 73.1
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 3.2e-71 272.3 202 71.3
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 3.2e-71 272.3 202 71.3
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 3.2e-71 272.3 220 69.1
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 7.1e-71 271.2 223 66.8
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 9.3e-71 270.8 186 73.7
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 2.1e-70 269.6 185 74.1
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 2.1e-70 269.6 214 69.2
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 2.7e-70 269.2 207 68.1
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 3.5e-70 268.9 185 74.1
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 4.6e-70 268.5 195 69.2
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 4.6e-70 268.5 188 73.9
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 6.0e-70 268.1 190 72.1
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 6.0e-70 268.1 195 69.2
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 6.0e-70 268.1 162 81.5
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 7.9e-70 267.7 157 84.1
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.0e-69 267.3 221 67.0
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.3e-69 266.9 221 67.0
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 1.8e-69 266.5 185 73.5
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 1.8e-69 266.5 182 73.6
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 1.8e-69 266.5 237 64.6
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 2.3e-69 266.2 169 76.9
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 3.9e-69 265.4 182 73.1
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 5.1e-69 265.0 207 70.0
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 5.1e-69 265.0 185 73.0
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 8.7e-69 264.2 185 72.4
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 1.1e-68 263.8 202 68.3
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 1.1e-68 263.8 166 80.1
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 1.5e-68 263.5 185 75.7
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 1.9e-68 263.1 184 72.8
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 2.5e-68 262.7 161 78.9
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 2.5e-68 262.7 188 73.4
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 2.5e-68 262.7 217 66.8
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 2.5e-68 262.7 185 74.6
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 3.3e-68 262.3 236 62.3
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 5.6e-68 261.5 216 65.7
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 7.4e-68 261.2 186 72.6
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 7.4e-68 261.2 186 72.6
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 7.4e-68 261.2 214 64.0
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 9.6e-68 260.8 214 64.0
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 1.3e-67 260.4 186 76.9
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 1.6e-67 260.0 260 60.0
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 2.1e-67 259.6 217 64.5
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 2.8e-67 259.2 197 67.0
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 3.7e-67 258.8 158 83.5
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 8.1e-67 257.7 166 78.3
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 1.8e-66 256.5 166 75.3
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 3.1e-66 255.8 214 65.4
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 3.1e-66 255.8 179 69.3
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 4.0e-66 255.4 190 70.5
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 4.0e-66 255.4 217 60.8
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 6.9e-66 254.6 191 68.1
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 6.9e-66 254.6 191 68.6
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.5e-65 253.4 195 69.7
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 1.5e-65 253.4 166 74.7
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 4.5e-65 251.9 191 67.5
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 5.8e-65 251.5 182 70.9
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 7.6e-65 251.1 185 67.6
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.0e-64 250.8 195 68.7
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 1.3e-64 250.4 184 71.7
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 1.1e-63 247.3 191 65.4
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 1.1e-63 247.3 173 71.7
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 1.4e-63 246.9 146 84.9
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 1.4e-63 246.9 160 76.9
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 1.4e-63 246.9 160 76.9
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 1.9e-63 246.5 232 59.1
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 1.9e-63 246.5 173 71.7
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 4.2e-63 245.4 142 85.2
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 5.5e-63 245.0 160 76.9
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 5.5e-63 245.0 160 76.9
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 9.3e-63 244.2 199 64.3
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 1.2e-62 243.8 132 90.9
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 4.6e-62 241.9 224 60.3
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 6.0e-62 241.5 219 60.3
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 6.0e-62 241.5 159 75.5
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 1.0e-61 240.7 139 82.7
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 6.7e-61 238.0 207 61.4
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 2.5e-60 236.1 183 64.5
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 2.5e-60 236.1 164 72.0
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 5.7e-60 235.0 154 76.6
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 2.8e-59 232.6 163 70.6
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 1.1e-58 230.7 202 61.4
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 3.1e-58 229.2 176 68.8
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 3.1e-58 229.2 161 71.4
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 3.1e-58 229.2 140 80.7
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 6.9e-58 228.0 191 60.7
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 1.2e-57 227.3 139 77.0
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 1.5e-57 226.9 133 83.5
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 5.9e-57 224.9 178 64.0
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 1.1e-55 220.7 170 65.3
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 7.2e-55 218.0 127 81.9
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 2.1e-54 216.5 127 81.9
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 6.3e-51 204.9 134 76.1
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 5.9e-49 198.4 178 66.3
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 1.9e-47 193.4 175 61.1
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.2e-46 190.7 162 61.1
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 2.1e-46 189.9 141 63.1
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.3e-45 186.4 196 54.1
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 3.9e-45 185.7 154 63.6
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 3.9e-45 185.7 143 69.9
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 8.8e-45 184.5 97 92.8
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 1.1e-44 184.1 145 61.4
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 2.6e-44 183.0 143 67.8
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 2.4e-42 176.4 106 83.0
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 1.2e-41 174.1 97 81.4
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 6.1e-38 161.8 148 55.4
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 5.2e-37 158.7 139 61.9
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 6.5e-32 141.7 77 92.2
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 6.5e-32 141.7 117 62.4
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 9.4e-31 137.9 132 49.2
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.6e-30 137.1 173 49.7
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 2.7e-30 136.3 77 85.7
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.8e-29 133.7 207 44.9
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 3.0e-29 132.9 217 44.2
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 4.0e-29 132.5 74 82.4
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 2.6e-28 129.8 112 62.5
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 1.6e-25 120.6 73 82.2
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 1.1e-23 114.4 94 60.6
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 1.8e-21 107.1 92 57.6
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 6.8e-21 105.1 88 59.1
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.3e-19 100.9 72 72.2
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 9.1e-18 94.7 70 65.7
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 1.5e-15 87.4 47 87.2
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 7.2e-15 85.1 52 78.8
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 1.4e-13 80.9 42 90.5
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 1.8e-13 80.5 42 88.1
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 4.0e-13 79.3 131 41.2
Lsat_1_v5_gn_8_13760 Lactuca sativa HOM05D004281 ORTHO05D004839 7.5e-12 75.1 125 42.4
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 1.1e-10 71.2 38 84.2
Cfa027194 Carpinus fangiana HOM05D004281 ORTHO05D004839 1.1e-07 61.2 171 27.5
AagrBONN_evm.TU.Sc2ySwM_344.4461 Anthoceros agrestis HOM05D004281 ORTHO05D004839 4.3e-07 59.3 107 41.1
Cc05_g01000 Coffea canephora HOM05D004281 ORTHO05D004839 2.1e-06 57.0 32 87.5
Hma1.2p1_0872F.1_g231180 Hydrangea macrophylla HOM05D004281 ORTHO05D004839 3.6e-06 56.2 69 50.7


User provided reference genes

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