Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 0.0e+00 1219.5 613 100.0
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 0.0e+00 1214.9 613 99.5
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 0.0e+00 1165.2 600 98.2
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 0.0e+00 1138.3 612 93.3
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 1.6e-306 1055.4 610 87.4
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 2.1e-298 1028.5 605 85.0
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 2.2e-295 1018.5 605 84.6
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 8.4e-295 1016.5 607 84.3
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 7.8e-293 1010.0 600 84.5
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 1.7e-292 1008.8 601 84.7
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 4.5e-288 994.2 607 83.2
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 4.2e-286 987.6 610 82.1
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 2.7e-285 984.9 608 82.1
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 6.0e-285 983.8 600 82.7
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 6.7e-284 980.3 608 81.2
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 5.6e-283 977.2 605 81.0
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 3.7e-282 974.5 597 82.2
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 4.8e-282 974.2 605 80.5
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 4.8e-282 974.2 608 81.2
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 1.5e-280 969.1 604 82.1
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 2.9e-279 964.9 603 81.3
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 1.9e-278 962.2 602 81.4
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 9.3e-278 959.9 596 81.7
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 2.1e-277 958.7 609 79.0
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 5.1e-276 954.1 609 79.0
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 8.7e-276 953.4 603 80.1
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.1e-275 953.0 603 80.4
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 4.3e-275 951.0 603 80.3
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 5.7e-275 950.7 602 80.7
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 7.4e-275 950.3 603 80.1
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 9.6e-275 949.9 611 79.2
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 1.6e-274 949.1 610 79.5
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.8e-274 948.3 612 79.1
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 4.8e-274 947.6 614 80.0
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 2.0e-272 942.2 603 79.3
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 2.0e-272 942.2 596 80.7
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 2.6e-272 941.8 621 79.5
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 2.6e-272 941.8 610 78.2
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 5.8e-272 940.6 596 80.5
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 7.6e-272 940.3 610 78.2
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 1.0e-271 939.9 600 80.0
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.0e-271 939.9 596 80.4
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 8.4e-271 936.8 606 77.7
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 1.1e-270 936.4 610 78.4
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 1.9e-270 935.6 598 80.1
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 7.1e-270 933.7 615 77.6
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 7.9e-269 930.2 610 77.5
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 7.9e-269 930.2 610 78.0
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.8e-268 929.1 602 78.7
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 2.3e-268 928.7 595 78.8
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 1.9e-267 925.6 606 78.5
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 4.3e-267 924.5 602 77.9
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 5.7e-267 924.1 605 78.2
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 7.4e-267 923.7 582 80.8
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 1.6e-266 922.5 605 77.9
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.8e-266 921.8 582 80.6
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.8e-265 919.1 610 78.0
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 3.1e-265 918.3 605 77.5
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 3.1e-265 918.3 602 78.1
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 1.4e-262 909.4 634 74.8
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 7.2e-262 907.1 606 76.7
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 2.1e-261 905.6 639 74.0
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 4.6e-261 904.4 584 78.8
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 1.8e-260 902.5 596 76.7
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.8e-260 902.5 571 80.6
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 6.7e-260 900.6 609 77.0
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 1.1e-259 899.8 600 76.3
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 1.5e-259 899.4 600 76.0
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 2.5e-259 898.7 614 76.2
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 7.4e-259 897.1 596 76.2
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.7e-258 896.0 573 80.5
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 2.8e-258 895.2 599 77.1
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 4.8e-258 894.4 620 75.5
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 2.2e-255 885.6 600 76.7
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 3.2e-254 881.7 600 75.0
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 1.6e-253 879.4 594 74.6
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 1.3e-250 869.8 561 79.1
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 1.7e-250 869.4 608 73.2
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 1.7e-250 869.4 611 73.0
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 7.0e-249 864.0 666 67.7
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 1.2e-248 863.2 590 73.6
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 2.0e-248 862.4 519 83.6
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 2.0e-248 862.4 552 79.7
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 5.0e-247 857.8 607 73.0
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 5.0e-247 857.8 612 72.2
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 2.7e-245 852.0 609 72.6
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 3.0e-244 848.6 606 72.3
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 2.6e-243 845.5 581 75.2
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 1.7e-242 842.8 614 70.7
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 2.2e-242 842.4 607 72.3
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 3.7e-242 841.6 582 73.5
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 6.3e-242 840.9 611 71.8
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 8.2e-242 840.5 580 75.3
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.8e-241 839.3 611 72.8
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 4.5e-240 834.7 561 75.0
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 2.2e-239 832.4 558 75.3
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 5.0e-239 831.2 580 75.0
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 8.5e-239 830.5 575 75.1
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 1.9e-238 829.3 611 70.7
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 1.9e-238 829.3 611 71.2
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 5.5e-238 827.8 607 71.7
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 1.6e-237 826.2 605 71.7
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.7e-237 825.5 579 74.4
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.6e-237 825.1 414 99.0
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 6.1e-237 824.3 577 74.7
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 1.8e-236 822.8 578 74.0
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 1.8e-236 822.8 578 74.0
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 6.8e-236 820.8 587 71.6
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 1.2e-235 820.1 576 74.1
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 1.8e-233 812.8 578 72.8
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 7.0e-233 810.8 610 69.0
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 7.7e-232 807.4 570 73.5
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 7.7e-232 807.4 578 72.3
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 5.5e-230 801.2 619 67.5
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 1.8e-228 796.2 580 71.6
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 6.8e-228 794.3 578 71.6
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 6.8e-228 794.3 578 71.6
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 9.1e-225 783.9 608 69.6
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 3.5e-224 781.9 602 69.8
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 7.7e-224 780.8 600 68.7
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 4.0e-220 768.5 543 74.6
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 6.8e-220 767.7 525 75.2
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 1.4e-217 760.0 535 72.5
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 4.1e-217 758.4 523 73.0
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.7e-215 753.1 537 71.1
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.9e-214 749.6 594 67.0
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.5e-211 740.0 551 69.0
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.0e-211 739.6 602 64.1
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.6e-211 739.2 523 73.0
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 4.9e-210 734.9 583 67.2
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 3.5e-208 728.8 599 64.4
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 1.6e-205 719.9 419 85.4
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 7.5e-203 711.1 604 64.9
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 2.2e-202 709.5 582 64.3
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 2.9e-202 709.1 603 63.7
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.6e-200 703.4 527 67.9
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.0e-199 700.7 527 67.9
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.0e-199 699.1 527 67.7
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 3.9e-199 698.7 412 83.7
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 6.6e-199 698.0 414 84.5
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.3e-191 673.7 495 69.5
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.3e-190 669.1 527 65.7
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 1.5e-187 660.2 513 66.7
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 2.4e-185 652.9 528 63.8
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 6.6e-183 644.8 462 73.4
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 8.1e-181 637.9 340 95.6
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 3.1e-164 582.8 570 54.4
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 3.9e-159 565.8 380 74.7
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 1.5e-158 563.9 533 59.5
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 4.1e-156 555.8 475 60.2
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 2.4e-148 530.0 341 78.3
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 5.3e-132 475.7 457 57.5
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 4.1e-108 396.4 239 81.2
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.6e-72 278.1 157 87.3
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 5.4e-68 263.1 145 91.0
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 5.6e-49 199.9 195 53.8
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 1.4e-47 195.3 195 52.3
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 2.0e-46 191.4 161 59.0
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 1.3e-45 188.7 161 58.4
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 1.1e-41 175.6 98 89.8
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 3.4e-38 164.1 131 64.1
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 2.6e-25 121.3 94 67.0
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 9.1e-23 112.8 94 61.7
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 3.4e-22 110.9 115 54.8
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 1.7e-21 108.6 60 90.0
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 9.4e-20 102.8 318 26.4
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 1.5e-17 95.5 126 39.7
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 6.3e-16 90.1 100 55.0
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.1e-15 89.4 280 28.6
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.1e-15 87.4 190 30.5
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.1e-15 87.4 216 33.3
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 2.0e-14 85.1 81 66.7
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 1.0e-13 82.8 86 53.5
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 3.3e-09 67.8 74 56.8
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 2.8e-08 64.7 54 55.6
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 3.5e-06 57.8 74 47.3


User provided reference genes

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