Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G3010 Fragaria x ananassa HOM05D001739 ORTHO05D207861 1.4e-151 539.7 281 100.0
FAN23G2998 Fragaria x ananassa HOM05D001739 ORTHO05D198978 7.1e-116 421.0 279 83.2
FAN19G2992 Fragaria x ananassa HOM05D001739 ORTHO05D015654 4.5e-110 401.7 240 89.2
FAN26G1219 Fragaria x ananassa HOM05D001739 ORTHO05D210162 3.8e-101 372.1 210 92.9
FAN26G3327 Fragaria x ananassa HOM05D001739 ORTHO05D015654 4.4e-97 358.6 240 81.7
FvH4_1g08691 Fragaria vesca HOM05D001739 ORTHO05D015654 7.4e-97 357.8 240 78.8
FAN19G1672 Fragaria x ananassa HOM05D001739 ORTHO05D015654 2.8e-96 355.9 244 77.9
FvH4_1g08730 Fragaria vesca HOM05D001739 ORTHO05D015654 5.3e-95 351.7 240 76.2
FAN26G0106 Fragaria x ananassa HOM05D001739 ORTHO05D015654 9.1e-95 350.9 240 76.7
FAN26G3321 Fragaria x ananassa HOM05D001739 ORTHO05D015654 6.5e-93 344.7 233 76.8
FvH4_1g08750 Fragaria vesca HOM05D001739 ORTHO05D015654 9.4e-92 340.9 240 79.6
FAN26G3373 Fragaria x ananassa HOM05D001739 ORTHO05D015654 3.3e-89 332.4 248 72.6
RcHm_v2.0_Chr2g0095131 Rosa chinensis HOM05D001739 ORTHO05D015654 6.8e-66 255.0 247 60.7
RcHm_v2.0_Chr2g0094991 Rosa chinensis HOM05D001739 ORTHO05D029616 4.1e-47 192.6 243 51.4
RcHm_v2.0_Chr2g0095061 Rosa chinensis HOM05D001739 ORTHO05D029616 3.3e-44 183.0 243 50.2
FAN26G3315 Fragaria x ananassa HOM05D001739 ORTHO05D025407 2.7e-38 163.3 287 43.6
FAN10G4203 Fragaria x ananassa HOM05D001739 ORTHO05D029616 1.7e-37 160.6 231 47.2
FAN26G1945 Fragaria x ananassa HOM05D001739 ORTHO05D035581 3.3e-36 156.4 286 42.7
FvH4_1g08660 Fragaria vesca HOM05D001739 ORTHO05D025407 2.1e-35 153.7 301 41.9
FvH4_7g02570 Fragaria vesca HOM05D001739 ORTHO05D029616 6.2e-35 152.1 172 53.5
FvH4_1g08670 Fragaria vesca HOM05D001739 ORTHO05D025407 4.0e-34 149.4 256 46.1
FAN23G2122 Fragaria x ananassa HOM05D001739 ORTHO05D035581 6.6e-29 132.1 214 46.3
FAN23G1590 Fragaria x ananassa HOM05D001739 ORTHO05D004575 1.7e-24 117.5 137 49.6
FAN28G0236 Fragaria x ananassa HOM05D001739 ORTHO05D004575 3.8e-24 116.3 137 49.6
FAN28G1182 Fragaria x ananassa HOM05D001739 ORTHO05D004575 3.8e-24 116.3 137 49.6
FvH4_1g09210 Fragaria vesca HOM05D001739 ORTHO05D004575 3.2e-23 113.2 137 48.2
RcHm_v2.0_Chr2g0095731 Rosa chinensis HOM05D001739 ORTHO05D004575 1.2e-22 111.3 137 47.4
Dinv25520 Davidia involucrata HOM05D001739 ORTHO05D004575 3.5e-22 109.8 175 41.1
FAN26G0091 Fragaria x ananassa HOM05D001739 ORTHO05D004575 1.0e-21 108.2 137 47.4
FAN26G1120 Fragaria x ananassa HOM05D001739 ORTHO05D004575 1.0e-21 108.2 137 47.4
FAN19G0975 Fragaria x ananassa HOM05D001739 ORTHO05D004575 1.3e-21 107.8 137 46.7
PGR142G3865 Punica granatum HOM05D001739 ORTHO05D004575 6.6e-21 105.5 177 39.0
MD15G1221900 Malus domestica HOM05D001739 ORTHO05D004575 1.9e-20 104.0 176 39.2
QL11p002157 Quercus lobata HOM05D001739 ORTHO05D004575 1.9e-20 104.0 137 45.3
Lj7C690T11 Lonicera japonica HOM05D001739 ORTHO05D004575 3.3e-20 103.2 177 39.0
COL.COLO4_21223 Corchorus olitorius HOM05D001739 ORTHO05D004575 5.6e-20 102.4 137 44.5
Prupe.7G193800 Prunus persica HOM05D001739 ORTHO05D004575 5.6e-20 102.4 137 43.1
vmacro17113 Vaccinium macrocarpon HOM05D001739 ORTHO05D004575 5.6e-20 102.4 136 42.6
Ciclev10023308m.g Citrus clementina HOM05D001739 ORTHO05D004575 7.3e-20 102.1 137 45.3
Duzib168G0208 Durio zibethinus HOM05D001739 ORTHO05D004575 7.3e-20 102.1 137 43.8
Atru.chr7.1752 Acer truncatum HOM05D001739 ORTHO05D004575 9.6e-20 101.7 137 43.8
TWI32G0648 Tripterygium wilfordii HOM05D001739 ORTHO05D004575 9.6e-20 101.7 137 43.8
MD02G1099100 Malus domestica HOM05D001739 ORTHO05D004575 1.3e-19 101.3 176 38.1
GSVIVG01023097001 Vitis vinifera HOM05D001739 ORTHO05D004575 1.3e-19 101.3 177 39.5
Rhsim05G0003800 Rhododendron simsii HOM05D001739 ORTHO05D004575 2.1e-19 100.5 136 43.4
Gohir.A07G016500 Gossypium hirsutum HOM05D001739 ORTHO05D004575 3.6e-19 99.8 137 43.8
Gohir.D07G016300 Gossypium hirsutum HOM05D001739 ORTHO05D004575 3.6e-19 99.8 137 43.8
Gorai.001G017100 Gossypium raimondii HOM05D001739 ORTHO05D004575 3.6e-19 99.8 137 43.8
CSS0017458 Camellia sinensis var. sinensis HOM05D001739 ORTHO05D004575 4.8e-19 99.4 137 41.6
Cfa002954 Carpinus fangiana HOM05D001739 ORTHO05D004575 4.8e-19 99.4 175 38.3
Lj4g0016027 Lotus japonicus HOM05D001739 ORTHO05D004575 8.1e-19 98.6 137 40.1
Manes.16G091500 Manihot esculenta HOM05D001739 ORTHO05D004575 8.1e-19 98.6 137 43.1
Thecc.09G071800 Theobroma cacao HOM05D001739 ORTHO05D004575 8.1e-19 98.6 137 43.1
TPR.G18558 Trifolium pratense HOM05D001739 ORTHO05D004575 8.1e-19 98.6 137 42.3
CiPaw.03G202600 Carya illinoinensis HOM05D001739 ORTHO05D004575 1.1e-18 98.2 211 35.1
Nn8g40294 Nelumbo nucifera HOM05D001739 ORTHO05D004575 1.1e-18 98.2 175 36.0
Prupe.7G186700 Prunus persica HOM05D001739 ORTHO05D004575 1.1e-18 98.2 138 42.0
Ca_09790_v3 Cicer arietinum L. HOM05D001739 ORTHO05D004575 1.4e-18 97.8 137 42.3
DCAR_003861 Daucus carota HOM05D001739 ORTHO05D004575 1.8e-18 97.4 177 39.0
Prupe.6G204500 Prunus persica HOM05D001739 ORTHO05D004575 1.8e-18 97.4 137 42.3
Sabra18G0055900 Salix brachista HOM05D001739 ORTHO05D004575 1.8e-18 97.4 211 35.1
Medtr1g072890 Medicago truncatula HOM05D001739 ORTHO05D004575 2.4e-18 97.1 137 41.6
Glyma.13G112900 Glycine max HOM05D001739 ORTHO05D004575 3.1e-18 96.7 137 40.1
Hma1.2p1_0169F.1_g074380 Hydrangea macrophylla HOM05D001739 ORTHO05D004575 4.0e-18 96.3 137 41.6
Potri.006G137900 Populus trichocarpa HOM05D001739 ORTHO05D004575 4.0e-18 96.3 137 41.6
DCAR_005064 Daucus carota HOM05D001739 ORTHO05D004575 5.3e-18 95.9 177 38.4
Lsat_1_v5_gn_7_35381 Lactuca sativa HOM05D001739 ORTHO05D004575 1.2e-17 94.7 137 42.3
Lalb_Chr12g0200311 Lupinus albus HOM05D001739 ORTHO05D004575 1.2e-17 94.7 149 38.9
Nitab4.5_0007773g0020 Nicotiana tabacum HOM05D001739 ORTHO05D004575 1.2e-17 94.7 176 36.9
vmacro17095 Vaccinium macrocarpon HOM05D001739 ORTHO05D004575 1.2e-17 94.7 136 41.2
MSTRG.5982 Avicennia marina HOM05D001739 ORTHO05D004575 1.5e-17 94.4 176 36.9
CAN.G63.12 Capsicum annuum HOM05D001739 ORTHO05D004575 1.5e-17 94.4 176 38.6
Thhalv10016153m.g Eutrema salsugineum HOM05D001739 ORTHO05D004575 2.0e-17 94.0 136 40.4
Nitab4.5_0001565g0110 Nicotiana tabacum HOM05D001739 ORTHO05D004575 2.0e-17 94.0 137 40.1
vmacro23084 Vaccinium macrocarpon HOM05D001739 ORTHO05D004575 2.0e-17 94.0 136 41.2
BcaC02g11606 Brassica carinata HOM05D001739 ORTHO05D004575 3.4e-17 93.2 115 47.8
A05p11320 Brassica napus HOM05D001739 ORTHO05D004575 3.4e-17 93.2 115 47.8
C04p13350 Brassica napus HOM05D001739 ORTHO05D004575 3.4e-17 93.2 115 47.8
BraA05t20081Z Brassica rapa HOM05D001739 ORTHO05D004575 3.4e-17 93.2 115 47.8
TAR383G0739 Trochodendron aralioides HOM05D001739 ORTHO05D004575 3.4e-17 93.2 136 41.9
AT2G34357 Arabidopsis thaliana HOM05D001739 ORTHO05D004575 4.5e-17 92.8 136 41.2
Aa31LG9G14080 Aethionema arabicum HOM05D001739 ORTHO05D004575 5.8e-17 92.4 136 41.9
Cc06_g12580 Coffea canephora HOM05D001739 ORTHO05D004575 5.8e-17 92.4 137 38.0
Glyma.17G046900 Glycine max HOM05D001739 ORTHO05D004575 5.8e-17 92.4 137 38.7
Phvul.003G128600 Phaseolus vulgaris HOM05D001739 ORTHO05D004575 5.8e-17 92.4 137 38.7
Solyc07g042380.4 Solanum lycopersicum HOM05D001739 ORTHO05D004575 5.8e-17 92.4 176 36.4
FAN18G1935 Fragaria x ananassa HOM05D001739 ORTHO05D029422 7.6e-17 92.0 165 40.0
HanXRQChr04g0122371 Helianthus annuus HOM05D001739 ORTHO05D004575 7.6e-17 92.0 144 39.6
FvH4_1g13570 Fragaria vesca HOM05D001739 ORTHO05D004575 9.9e-17 91.7 130 41.5
FvH4_1g13590 Fragaria vesca HOM05D001739 ORTHO05D035581 9.9e-17 91.7 133 48.9
Lalb_Chr13g0299281 Lupinus albus HOM05D001739 ORTHO05D004575 9.9e-17 91.7 137 39.4
Sp4g16630 Schrenkiella parvula HOM05D001739 ORTHO05D004575 9.9e-17 91.7 136 41.2
BcaC02g11500 Brassica carinata HOM05D001739 ORTHO05D004575 1.3e-16 91.3 115 46.1
ECA240G3214 Erigeron canadensis HOM05D001739 ORTHO05D004575 1.3e-16 91.3 199 32.2
Psat6g134600 Pisum sativum HOM05D001739 ORTHO05D004575 1.3e-16 91.3 137 39.4
unitig_744.g24652 Utricularia gibba HOM05D001739 ORTHO05D004575 1.3e-16 91.3 159 36.5
PSO421G0331 Papaver somniferum HOM05D001739 ORTHO05D004575 1.7e-16 90.9 204 32.4
THA.LOC104809049 Tarenaya hassleriana HOM05D001739 ORTHO05D004575 2.2e-16 90.5 233 33.5
VMungo1215G0229 Vigna mungo HOM05D001739 ORTHO05D004575 2.2e-16 90.5 137 37.2
AL4G30320 Arabidopsis lyrata HOM05D001739 ORTHO05D004575 2.9e-16 90.1 136 40.4
FvH4_5g06040 Fragaria vesca HOM05D001739 ORTHO05D029422 2.9e-16 90.1 165 39.4
ATR0681G226 Amborella trichopoda HOM05D001739 ORTHO05D004575 3.8e-16 89.7 146 41.8
C04p14660 Brassica napus HOM05D001739 ORTHO05D004575 3.8e-16 89.7 144 38.9
BolC4t23047H Brassica oleracea HOM05D001739 ORTHO05D004575 3.8e-16 89.7 144 38.9
FAN08G1830 Fragaria x ananassa HOM05D001739 ORTHO05D004575 3.8e-16 89.7 170 37.6
HanXRQChr09g0273551 Helianthus annuus HOM05D001739 ORTHO05D004575 3.8e-16 89.7 199 33.7
Sopen07g021980 Solanum pennellii HOM05D001739 ORTHO05D004575 3.8e-16 89.7 176 36.4
BcaB02g09558 Brassica carinata HOM05D001739 ORTHO05D004575 4.9e-16 89.4 151 41.1
Medtr1g072970 Medicago truncatula HOM05D001739 ORTHO05D004575 6.4e-16 89.0 136 39.0
TPR.G13945 Trifolium pratense HOM05D001739 ORTHO05D004575 6.4e-16 89.0 142 38.7
A03p19100 Brassica napus HOM05D001739 ORTHO05D004575 1.1e-15 88.2 115 45.2
Eucgr.C00777 Eucalyptus grandis HOM05D001739 ORTHO05D004575 1.4e-15 87.8 176 34.1
FvH4_1g13610 Fragaria vesca HOM05D001739 ORTHO05D004575 1.4e-15 87.8 137 39.4
FAN19G0770 Fragaria x ananassa HOM05D001739 ORTHO05D004575 1.4e-15 87.8 137 39.4
FAN26G0455 Fragaria x ananassa HOM05D001739 ORTHO05D004575 1.9e-15 87.4 130 39.2
PSO104G0064 Papaver somniferum HOM05D001739 ORTHO05D004575 1.9e-15 87.4 204 31.4
BcaB01g03896 Brassica carinata HOM05D001739 ORTHO05D004575 2.4e-15 87.0 115 43.5
C03p22320 Brassica napus HOM05D001739 ORTHO05D004575 2.4e-15 87.0 115 44.3
BolC3t14614H Brassica oleracea HOM05D001739 ORTHO05D004575 2.4e-15 87.0 115 44.3
Cpa.g.sc32.6 Carica papaya HOM05D001739 ORTHO05D004575 3.2e-15 86.7 144 39.6
FAN04G1381 Fragaria x ananassa HOM05D001739 ORTHO05D004575 4.2e-15 86.3 135 43.0
CARHR128440 Cardamine hirsuta HOM05D001739 ORTHO05D004575 5.4e-15 85.9 115 43.5
Peaxi162Scf00191g01112 Petunia axillaris HOM05D001739 ORTHO05D004575 5.4e-15 85.9 176 34.7
TPR.G34376 Trifolium pratense HOM05D001739 ORTHO05D004575 5.4e-15 85.9 137 38.0
BcaC01g05798 Brassica carinata HOM05D001739 ORTHO05D004575 7.1e-15 85.5 115 42.6
Sed0021617 Sechium edule HOM05D001739 ORTHO05D004575 7.1e-15 85.5 137 38.7
BraA03t11167Z Brassica rapa HOM05D001739 ORTHO05D004575 9.3e-15 85.1 115 42.6
CANSAT56G3462 Cannabis sativa HOM05D001739 ORTHO05D004575 1.6e-14 84.3 217 33.2
Carub.0004s1602 Capsella rubella HOM05D001739 ORTHO05D004575 2.1e-14 84.0 136 38.2
arahy.Tifrunner.gnm1.ann1.SDZ4E8 Arachis hypogaea HOM05D001739 ORTHO05D004575 6.0e-14 82.4 137 39.4
Psat7g002920 Pisum sativum HOM05D001739 ORTHO05D004575 6.0e-14 82.4 137 38.0
arahy.Tifrunner.gnm1.ann1.9HZQ4R Arachis hypogaea HOM05D001739 ORTHO05D004575 7.9e-14 82.0 137 38.7
SGA_v2.0_scaffold281G46906 Striga asiatica HOM05D001739 ORTHO05D004575 7.9e-14 82.0 177 35.6
arahy.Tifrunner.gnm1.ann1.WW7XLJ Arachis hypogaea HOM05D001739 ORTHO05D004575 1.0e-13 81.6 138 38.4
CDE04G0230 Ceratophyllum demersum HOM05D001739 ORTHO05D004575 1.0e-13 81.6 154 34.4
ClCG03G014800 Citrullus lanatus HOM05D001739 ORTHO05D004575 1.0e-13 81.6 176 35.2
arahy.Tifrunner.gnm1.ann1.7457H2 Arachis hypogaea HOM05D001739 ORTHO05D004575 2.3e-13 80.5 138 38.4
MELO3C015548.2 Cucumis melo HOM05D001739 ORTHO05D004575 3.0e-13 80.1 143 37.8
CDE12G0121 Ceratophyllum demersum HOM05D001739 ORTHO05D004575 1.1e-12 78.2 184 32.6
HPP92_004359 Vanilla planifolia HOM05D001739 ORTHO05D004575 1.1e-12 78.2 138 37.0
CsaV3_1G041350 Cucumis sativus L. HOM05D001739 ORTHO05D004575 1.9e-12 77.4 175 33.7
SHI02768 Sapria himalayana HOM05D001739 ORTHO05D004575 2.5e-12 77.0 145 35.9
Sed0004150 Sechium edule HOM05D001739 ORTHO05D004575 1.6e-11 74.3 176 34.1
AUR62039592 Chenopodium quinoa HOM05D001739 ORTHO05D004575 1.4e-10 71.2 135 37.8
Os02g0782100 Oryza sativa ssp. japonica HOM05D001739 ORTHO05D004575 1.4e-10 71.2 136 35.3
Zm00001eb257110 Zea mays HOM05D001739 ORTHO05D004575 1.4e-10 71.2 136 35.3
Ah.09g229240 Amaranthus hybridus HOM05D001739 ORTHO05D004575 3.1e-10 70.1 128 35.9
EL10Ac8g19018 Beta vulgaris HOM05D001739 ORTHO05D004575 6.9e-10 68.9 152 34.2
AUR62019633 Chenopodium quinoa HOM05D001739 ORTHO05D004575 1.5e-09 67.8 129 34.1
Aqoxy7G03292 Aquilegia oxysepala HOM05D001739 ORTHO05D004575 2.6e-09 67.0 211 31.3
AUR62025277 Chenopodium quinoa HOM05D001739 ORTHO05D004575 7.6e-09 65.5 150 35.3
Pp3c2_3190 Physcomitrium patens HOM05D001739 ORTHO05D004575 9.9e-09 65.1 147 32.0
Mapoly0061s0020 Marchantia polymorpha HOM05D001739 ORTHO05D004575 2.9e-08 63.5 147 28.6
Hund23253 Selenicereus undatus HOM05D001739 ORTHO05D004575 2.9e-08 63.5 128 31.2
AUR62028280 Chenopodium quinoa HOM05D001739 ORTHO05D004575 3.8e-08 63.2 136 33.8
CAN.G333.15 Capsicum annuum HOM05D001739 ORTHO05D004575 7.1e-07 58.9 90 42.2
Sc24g0001530 Simmondsia chinensis HOM05D001739 ORTHO05D004575 2.7e-06 57.0 106 34.0


User provided reference genes

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