Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.0e-236 822.4 532 100.0
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 8.8e-224 780.4 534 95.3
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.2e-222 775.8 534 95.1
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 6.3e-214 747.7 533 93.6
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 9.5e-178 627.5 519 84.6
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.1e-162 577.4 518 78.0
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 5.0e-94 349.4 488 46.3
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 1.4e-80 304.7 486 41.4
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 1.5e-69 268.1 607 35.4
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 9.5e-69 265.4 612 35.3
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 2.9e-65 253.8 602 33.6
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 5.4e-64 249.6 615 33.7
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 9.2e-64 248.8 559 35.2
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 3.5e-63 246.9 543 35.9
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 6.0e-63 246.1 266 51.5
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 5.0e-62 243.0 274 50.7
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 8.6e-62 242.3 270 51.9
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 1.9e-61 241.1 602 33.1
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 3.3e-61 240.4 602 33.1
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 2.1e-60 237.7 565 33.6
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 3.1e-59 233.8 567 32.6
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 6.8e-59 232.6 602 33.6
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 6.8e-59 232.6 269 50.6
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 2.0e-58 231.1 462 35.5
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 2.0e-58 231.1 597 33.5
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 3.4e-58 230.3 269 49.1
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 4.4e-58 229.9 619 33.6
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.4e-58 229.9 619 33.6
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 1.7e-57 228.0 265 49.4
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 2.2e-57 227.6 565 33.1
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 2.2e-57 227.6 266 49.6
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.9e-57 227.3 619 33.4
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 3.7e-57 226.9 280 48.2
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 4.9e-57 226.5 277 47.7
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 6.4e-57 226.1 612 32.2
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 8.3e-57 225.7 269 48.7
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 1.4e-56 224.9 269 47.2
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.4e-56 224.9 619 32.8
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 1.4e-56 224.9 602 30.6
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 4.1e-56 223.4 274 47.4
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 4.1e-56 223.4 269 48.0
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 1.2e-55 221.9 626 32.4
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 1.6e-55 221.5 593 31.4
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 2.1e-55 221.1 584 32.0
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 2.7e-55 220.7 280 47.1
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 4.6e-55 219.9 269 46.1
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 6.0e-55 219.5 268 48.5
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 7.8e-55 219.2 602 31.6
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 1.7e-54 218.0 266 48.1
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 3.0e-54 217.2 274 46.7
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 3.0e-54 217.2 601 31.3
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 3.9e-54 216.9 270 46.3
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 6.6e-54 216.1 270 48.1
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 6.6e-54 216.1 270 47.0
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 8.6e-54 215.7 268 46.3
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 8.6e-54 215.7 269 45.4
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 8.6e-54 215.7 269 45.4
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 1.1e-53 215.3 369 40.4
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 2.5e-53 214.2 258 48.4
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 3.3e-53 213.8 271 47.6
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 7.3e-53 212.6 271 47.2
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 1.6e-52 211.5 255 47.5
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 2.1e-52 211.1 269 46.1
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 2.1e-52 211.1 269 46.1
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 3.6e-52 210.3 560 32.5
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 6.2e-52 209.5 560 32.1
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 6.8e-51 206.1 268 47.0
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 1.5e-50 204.9 269 45.0
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 1.5e-50 204.9 267 46.8
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 2.6e-50 204.1 271 44.3
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 3.4e-50 203.8 549 31.3
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 5.8e-50 203.0 595 30.6
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 1.3e-49 201.8 577 31.5
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 2.9e-49 200.7 261 43.7
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 4.9e-49 199.9 584 29.8
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.1e-48 198.7 269 45.7
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.9e-48 198.0 445 33.3
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 4.1e-48 196.8 258 46.9
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 3.0e-46 190.7 278 43.2
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 6.6e-46 189.5 265 43.4
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 8.6e-46 189.1 265 43.4
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 8.6e-46 189.1 265 43.4
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 8.6e-46 189.1 267 43.1
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 1.5e-45 188.3 265 43.0
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 1.9e-45 188.0 265 43.0
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 2.5e-45 187.6 267 43.4
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 1.2e-44 185.3 263 43.3
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 2.1e-44 184.5 280 41.8
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 2.1e-44 184.5 252 44.0
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 2.8e-44 184.1 263 42.6
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 3.6e-44 183.7 265 42.3
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.6e-44 183.7 598 30.6
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 4.7e-44 183.3 271 42.1
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 6.2e-44 183.0 265 42.3
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 8.1e-44 182.6 265 41.5
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 1.8e-43 181.4 249 45.0
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 2.4e-43 181.0 263 43.0
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 1.2e-42 178.7 258 41.9
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 1.2e-42 178.7 258 41.9
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 1.2e-42 178.7 258 41.9
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 1.2e-42 178.7 265 40.8
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 1.5e-42 178.3 229 45.9
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 3.4e-42 177.2 247 43.7
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 5.8e-42 176.4 274 40.5
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 1.4e-40 171.8 245 41.6
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 1.9e-40 171.4 265 39.6
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 4.2e-40 170.2 264 40.5
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 4.6e-39 166.8 272 40.1
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 5.1e-38 163.3 542 29.2
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 1.9e-37 161.4 264 39.0
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 4.3e-37 160.2 151 58.9
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 4.0e-35 153.7 264 37.1
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 6.9e-35 152.9 269 35.7
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 1.5e-34 151.8 355 32.1
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 2.0e-34 151.4 306 35.3
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 2.6e-34 151.0 273 37.0
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 2.7e-31 141.0 257 38.5
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.3e-30 138.7 498 30.5
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 8.7e-30 136.0 264 35.6
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 3.3e-29 134.0 153 51.0
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 5.3e-27 126.7 152 49.3
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 1.3e-25 122.1 214 39.3
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 4.9e-25 120.2 128 52.3
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 5.5e-24 116.7 257 31.1
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 1.6e-23 115.2 253 35.2
MD01G1071100 Malus domestica HOM05D004687 ORTHO05D006002 4.6e-23 113.6 101 53.5
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 6.0e-23 113.2 607 24.9
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 1.3e-22 112.1 543 26.9
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 4.0e-19 100.5 220 35.9
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 8.4e-17 92.8 123 43.9
QL06p033484 Quercus lobata HOM05D004687 ORTHO05D006002 9.3e-16 89.4 156 37.2
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 2.1e-15 88.2 156 38.5
COL.COLO4_21921 Corchorus olitorius HOM05D004687 ORTHO05D006002 2.3e-14 84.7 69 50.7
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 8.7e-14 82.8 102 45.1
ATR0804G028 Amborella trichopoda HOM05D004687 ORTHO05D006002 4.3e-13 80.5 115 47.0
PSO541G1518 Papaver somniferum HOM05D004687 ORTHO05D006002 3.7e-12 77.4 145 31.7
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 8.2e-12 76.3 111 43.2
Mapoly0091s0017 Marchantia polymorpha HOM05D004687 ORTHO05D006002 3.1e-11 74.3 256 27.3
CBR_g45680 Chara braunii HOM05D004687 ORTHO05D006002 1.2e-10 72.4 277 25.3
FAN03G2011 Fragaria x ananassa HOM05D004687 ORTHO05D006002 5.9e-10 70.1 434 25.8
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 3.8e-09 67.4 90 47.8
Ca_03421_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 4.2e-08 63.9 69 56.5
vmacro13233 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 1.3e-06 58.9 158 31.0
Actinidia10067 Actinidia chinensis HOM05D004687 ORTHO05D006002 1.8e-06 58.5 83 43.4
Lalb_Chr17g0339031 Lupinus albus HOM05D004687 ORTHO05D006002 3.0e-06 57.8 193 28.0


User provided reference genes

Program Settings