Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G2911 Fragaria x ananassa HOM05D011470 ORTHO05D000074 4.0e-72 274.6 135 100.0
FvH4_1g10931 Fragaria vesca HOM05D000151 ORTHO05D000074 2.3e-35 152.5 138 65.2
FAN23G2766 Fragaria x ananassa HOM05D000151 ORTHO05D000074 2.2e-30 136.0 132 59.8
FAN28G1221 Fragaria x ananassa HOM05D000151 ORTHO05D000074 2.9e-30 135.6 130 60.8
FAN19G1842 Fragaria x ananassa HOM05D000151 ORTHO05D000074 1.9e-29 132.9 136 57.4
FAN26G1136 Fragaria x ananassa HOM05D000151 ORTHO05D000074 1.9e-29 132.9 136 57.4
FAN23G2321 Fragaria x ananassa HOM05D000151 ORTHO05D210091 8.7e-27 124.0 97 72.2
RcHm_v2.0_Chr2g0099621 Rosa chinensis HOM05D000151 ORTHO05D000074 7.4e-18 94.4 130 46.9
Prupe.7G176700 Prunus persica HOM05D000151 ORTHO05D000074 2.1e-17 92.8 131 49.6
Prupe.7G176500 Prunus persica HOM05D000151 ORTHO05D000074 3.1e-16 89.0 130 45.4
RcHm_v2.0_Chr2g0098141 Rosa chinensis HOM05D000151 ORTHO05D000074 7.6e-15 84.3 130 46.9
FvH4_1g10321 Fragaria vesca HOM05D011470 ORTHO05D016309 1.3e-14 83.6 130 43.1
FAN19G0228 Fragaria x ananassa HOM05D011470 ORTHO05D016309 2.2e-14 82.8 127 40.9
RcHm_v2.0_Chr2g0097161 Rosa chinensis HOM05D011470 ORTHO05D016309 2.2e-14 82.8 132 42.4
FAN19G1393 Fragaria x ananassa HOM05D011470 ORTHO05D016309 3.8e-14 82.0 130 42.3
FvH4_1g10320 Fragaria vesca HOM05D011470 ORTHO05D016309 6.4e-14 81.3 130 41.5
FAN28G1149 Fragaria x ananassa HOM05D000151 ORTHO05D000074 8.4e-14 80.9 127 44.1
FvH4_1g10850 Fragaria vesca HOM05D000151 ORTHO05D000074 2.4e-13 79.3 130 45.4
FAN19G1876 Fragaria x ananassa HOM05D000151 ORTHO05D000074 2.4e-13 79.3 130 45.4
PSO675G1630 Papaver somniferum HOM05D000151 ORTHO05D000074 7.1e-13 77.8 150 38.0
CANSAT25G3017 Cannabis sativa HOM05D000151 ORTHO05D000074 4.6e-12 75.1 128 39.8
Prupe.7G176900 Prunus persica HOM05D000151 ORTHO05D000074 4.6e-12 75.1 63 63.5
QL06p052453 Quercus lobata HOM05D000151 ORTHO05D000074 4.6e-12 75.1 135 39.3
Eucgr.I01470 Eucalyptus grandis HOM05D000151 ORTHO05D000074 6.0e-12 74.7 119 42.0
FvH4_7g25891 Fragaria vesca HOM05D000151 ORTHO05D000074 1.3e-11 73.6 136 37.5
MD15G1237600 Malus domestica HOM05D000151 ORTHO05D000074 1.8e-11 73.2 116 40.5
FAN06G3748 Fragaria x ananassa HOM05D000287 ORTHO05D002423 3.0e-11 72.4 137 37.2
Aqoxy6G01889 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 3.9e-11 72.0 153 37.3
FAN28G1333 Fragaria x ananassa HOM05D011470 ORTHO05D000074 8.7e-11 70.9 62 59.7
Nn6g31857 Nelumbo nucifera HOM05D000151 ORTHO05D000074 8.7e-11 70.9 143 38.5
MD14G1159500 Malus domestica HOM05D000151 ORTHO05D000074 1.1e-10 70.5 118 39.8
Rhsim02G0106100 Rhododendron simsii HOM05D000151 ORTHO05D000074 1.1e-10 70.5 117 40.2
Aqoxy2G00614 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.9e-10 69.7 127 38.6
Eucgr.I01472 Eucalyptus grandis HOM05D000151 ORTHO05D000074 1.9e-10 69.7 116 39.7
HanXRQChr15g0477851 Helianthus annuus HOM05D000151 ORTHO05D000074 1.9e-10 69.7 147 34.0
Actinidia18026 Actinidia chinensis HOM05D000151 ORTHO05D000074 3.3e-10 68.9 143 34.3
ECA246G4358 Erigeron canadensis HOM05D000151 ORTHO05D000074 3.3e-10 68.9 148 37.8
FAN03G0028 Fragaria x ananassa HOM05D000287 ORTHO05D002423 3.3e-10 68.9 138 36.2
FAN26G3055 Fragaria x ananassa HOM05D011470 ORTHO05D016309 3.3e-10 68.9 91 47.3
Rhsim05G0073700 Rhododendron simsii HOM05D000151 ORTHO05D000074 3.3e-10 68.9 117 39.3
Aqoxy6G00559 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 4.3e-10 68.6 125 39.2
Hma1.2p1_0032F.1_g018990 Hydrangea macrophylla HOM05D000151 ORTHO05D000074 4.3e-10 68.6 143 35.7
PSO541G6252 Papaver somniferum HOM05D000151 ORTHO05D000074 4.3e-10 68.6 150 34.7
vmacro20504 Vaccinium macrocarpon HOM05D000151 ORTHO05D000074 4.3e-10 68.6 117 39.3
TAR628G0991 Trochodendron aralioides HOM05D000151 ORTHO05D000074 5.6e-10 68.2 149 36.9
Actinidia20542 Actinidia chinensis HOM05D000151 ORTHO05D000074 7.4e-10 67.8 142 34.5
Dinv12042 Davidia involucrata HOM05D000151 ORTHO05D000074 7.4e-10 67.8 137 34.3
Eucgr.I01474 Eucalyptus grandis HOM05D000151 ORTHO05D000074 1.3e-09 67.0 144 36.1
Dinv08540 Davidia involucrata HOM05D000151 ORTHO05D000074 1.6e-09 66.6 138 34.8
Aqoxy3G02113 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 2.1e-09 66.2 82 41.5
Manes.01G152400 Manihot esculenta HOM05D000151 ORTHO05D000074 2.8e-09 65.9 139 36.7
DCAR_022831 Daucus carota HOM05D000151 ORTHO05D000074 4.8e-09 65.1 141 32.6
FAN28G2605 Fragaria x ananassa HOM05D011470 ORTHO05D016309 4.8e-09 65.1 91 46.2
Prupe.7G176800 Prunus persica HOM05D000151 ORTHO05D000074 6.2e-09 64.7 56 53.6
Sabra05G0086100 Salix brachista HOM05D000151 ORTHO05D000074 6.2e-09 64.7 121 40.5
Aqoxy6G01888 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 8.2e-09 64.3 160 34.4
Prupe.8G190800 Prunus persica HOM05D000151 ORTHO05D000074 8.2e-09 64.3 132 34.8
TAR628G1200 Trochodendron aralioides HOM05D000151 ORTHO05D000074 8.2e-09 64.3 134 36.6
CAN.G890.12 Capsicum annuum HOM05D000151 ORTHO05D000074 1.1e-08 63.9 89 41.6
Eucgr.I01468 Eucalyptus grandis HOM05D000151 ORTHO05D000074 1.1e-08 63.9 118 37.3
Potri.004G179685 Populus trichocarpa HOM05D000151 ORTHO05D000074 1.1e-08 63.9 140 37.1
Rhsim05G0163300 Rhododendron simsii HOM05D001789 ORTHO05D001755 1.1e-08 63.9 144 36.8
Rhsim11G0195100 Rhododendron simsii HOM05D000151 ORTHO05D000074 1.4e-08 63.5 142 33.1
vmacro02302 Vaccinium macrocarpon HOM05D000151 ORTHO05D000074 1.4e-08 63.5 142 32.4
CSS0014442 Camellia sinensis var. sinensis HOM05D000151 ORTHO05D000074 2.4e-08 62.8 145 31.0
CSS0022513 Camellia sinensis var. sinensis HOM05D000151 ORTHO05D000074 2.4e-08 62.8 136 35.3
Lj5P174T68 Lonicera japonica HOM05D000151 ORTHO05D000074 2.4e-08 62.8 140 34.3
PGR142G2333 Punica granatum HOM05D000151 ORTHO05D000074 2.4e-08 62.8 139 37.4
RcHm_v2.0_Chr2g0097171 Rosa chinensis HOM05D011470 ORTHO05D035828 2.4e-08 62.8 121 38.8
Aqoxy7G01778 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 3.1e-08 62.4 89 43.8
Peaxi162Scf00300g10017 Petunia axillaris HOM05D000151 ORTHO05D000074 3.1e-08 62.4 152 35.5
AUR62028682 Chenopodium quinoa HOM05D000151 ORTHO05D000074 4.0e-08 62.0 120 38.3
FAN20G1383 Fragaria x ananassa HOM05D000151 ORTHO05D000074 4.0e-08 62.0 134 31.3
Nn6g31858 Nelumbo nucifera HOM05D000151 ORTHO05D000074 4.0e-08 62.0 129 35.7
Peaxi162Scf00300g00049 Petunia axillaris HOM05D000151 ORTHO05D000074 4.0e-08 62.0 137 32.8
Hund14178 Selenicereus undatus HOM05D000151 ORTHO05D000074 4.0e-08 62.0 99 40.4
CAN.G890.15 Capsicum annuum HOM05D000151 ORTHO05D000074 5.3e-08 61.6 154 34.4
Hma1.2p1_0548F.1_g176680 Hydrangea macrophylla HOM05D000151 ORTHO05D000074 5.3e-08 61.6 98 39.8
CiPaw.07G005500 Carya illinoinensis HOM05D000151 ORTHO05D000074 6.9e-08 61.2 140 33.6
RcHm_v2.0_Chr6g0277851 Rosa chinensis HOM05D000151 ORTHO05D000074 6.9e-08 61.2 121 33.9
FAN17G2765 Fragaria x ananassa HOM05D016448 ORTHO05D000074 9.0e-08 60.8 125 37.6
Gohir.D04G169200 Gossypium hirsutum HOM05D000151 ORTHO05D000074 9.0e-08 60.8 147 34.7
Lsat_1_v5_gn_3_47300 Lactuca sativa HOM05D004423 ORTHO05D005464 9.0e-08 60.8 59 50.8
RcHm_v2.0_Chr6g0303821 Rosa chinensis HOM05D000151 ORTHO05D000074 9.0e-08 60.8 134 30.6
Sabra04G0121100 Salix brachista HOM05D000151 ORTHO05D000074 9.0e-08 60.8 139 36.0
vmacro17118 Vaccinium macrocarpon HOM05D001789 ORTHO05D001755 9.0e-08 60.8 139 35.3
Nn1g04501 Nelumbo nucifera HOM05D000151 ORTHO05D000074 1.2e-07 60.5 133 35.3
Nn5g30876 Nelumbo nucifera HOM05D000151 ORTHO05D000074 1.2e-07 60.5 132 32.6
Potri.005G105000 Populus trichocarpa HOM05D000151 ORTHO05D000074 1.2e-07 60.5 138 37.7
Aqoxy2G01390 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.5e-07 60.1 84 41.7
Aqoxy3G01208 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.5e-07 60.1 86 40.7
Prupe.8G172400 Prunus persica HOM05D000151 ORTHO05D000074 1.5e-07 60.1 141 33.3
Rhsim05G0163400 Rhododendron simsii HOM05D001789 ORTHO05D001755 1.5e-07 60.1 144 35.4
Hund02799 Selenicereus undatus HOM05D000151 ORTHO05D000074 1.5e-07 60.1 89 42.7
Aqoxy7G01775 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 2.0e-07 59.7 132 37.9
EL10Ac5g10604 Beta vulgaris HOM05D010377 ORTHO05D011364 2.0e-07 59.7 117 41.0
Peaxi162Scf00300g00317 Petunia axillaris HOM05D000151 ORTHO05D000074 2.0e-07 59.7 125 34.4
AUR62008105 Chenopodium quinoa HOM05D000151 ORTHO05D000074 2.6e-07 59.3 119 37.0
FAN09G1487 Fragaria x ananassa HOM05D016448 ORTHO05D000074 2.6e-07 59.3 125 37.6
FAN28G1954 Fragaria x ananassa HOM05D016448 ORTHO05D000074 2.6e-07 59.3 87 44.8
MD05G1128300 Malus domestica HOM05D000151 ORTHO05D000074 2.6e-07 59.3 144 35.4
Peaxi162Scf00300g00043 Petunia axillaris HOM05D000151 ORTHO05D000074 2.6e-07 59.3 129 33.3
QL06p052345 Quercus lobata HOM05D000151 ORTHO05D000074 2.6e-07 59.3 131 36.6
Rhsim05G0163200 Rhododendron simsii HOM05D001789 ORTHO05D001755 2.6e-07 59.3 145 35.2
Sc09g0005460 Simmondsia chinensis HOM05D000151 ORTHO05D000074 2.6e-07 59.3 115 33.9
Sc11g0003610 Simmondsia chinensis HOM05D000151 ORTHO05D000074 2.6e-07 59.3 135 37.8
TAR636G0632 Trochodendron aralioides HOM05D000151 ORTHO05D000074 2.6e-07 59.3 148 31.1
Aqoxy7G01870 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 3.4e-07 58.9 101 41.6
Potri.009G140000 Populus trichocarpa HOM05D000151 ORTHO05D000074 3.4e-07 58.9 140 36.4
Solyc02g083190.2 Solanum lycopersicum HOM05D000151 ORTHO05D000074 3.4e-07 58.9 159 32.7
TAR636G3348 Trochodendron aralioides HOM05D000151 ORTHO05D000074 3.4e-07 58.9 143 32.9
Aqoxy4G00447 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 4.5e-07 58.5 95 37.9
CiPaw.08G069900 Carya illinoinensis HOM05D000151 ORTHO05D000074 4.5e-07 58.5 146 31.5
CiPaw.08G070000 Carya illinoinensis HOM05D000151 ORTHO05D000074 4.5e-07 58.5 127 33.1
MBI17_g17504_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 4.5e-07 58.5 133 34.6
MD15G1005500 Malus domestica HOM05D000151 ORTHO05D000074 4.5e-07 58.5 140 33.6
TAR636G1120 Trochodendron aralioides HOM05D000151 ORTHO05D000074 4.5e-07 58.5 133 36.8
Medtr6g018390 Medicago truncatula HOM05D000151 ORTHO05D000074 5.8e-07 58.2 116 38.8
Thecc.04G266500 Theobroma cacao HOM05D000151 ORTHO05D000074 5.8e-07 58.2 111 36.0
QL06p052362 Quercus lobata HOM05D000151 ORTHO05D000074 7.6e-07 57.8 108 37.0
RcHm_v2.0_Chr6g0279451 Rosa chinensis HOM05D000151 ORTHO05D000074 7.6e-07 57.8 141 34.8
Sabra09G0108800 Salix brachista HOM05D000151 ORTHO05D000074 7.6e-07 57.8 140 33.6
TAR636G0252 Trochodendron aralioides HOM05D000151 ORTHO05D000074 7.6e-07 57.8 147 29.9
TAR636G3671 Trochodendron aralioides HOM05D000151 ORTHO05D000074 7.6e-07 57.8 147 32.0
Aqoxy6G00560 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.0e-06 57.4 80 43.8
Dinv39566 Davidia involucrata HOM05D000151 ORTHO05D000074 1.0e-06 57.4 138 34.1
Aqoxy2G01395 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.3e-06 57.0 126 35.7
FAN19G1645 Fragaria x ananassa HOM05D016448 ORTHO05D000074 1.3e-06 57.0 131 35.9
Manes.15G063400 Manihot esculenta HOM05D000151 ORTHO05D000074 1.3e-06 57.0 112 34.8
Aqoxy4G01250 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.7e-06 56.6 132 34.1
Aqoxy4G02957 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.7e-06 56.6 123 32.5
Aqoxy5G01074 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.7e-06 56.6 123 30.9
Gorai.012G157200 Gossypium raimondii HOM05D000151 ORTHO05D000074 1.7e-06 56.6 147 34.0
Medtr3g092000 Medicago truncatula HOM05D000151 ORTHO05D000074 1.7e-06 56.6 95 42.1
Potri.001G277400 Populus trichocarpa HOM05D000151 ORTHO05D000074 1.7e-06 56.6 131 35.1
TAR636G0046 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.7e-06 56.6 129 36.4
TAR636G1810 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.7e-06 56.6 132 35.6
Aqoxy3G03890 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 2.2e-06 56.2 132 34.1
Aqoxy3G03891 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 2.2e-06 56.2 132 34.1
Aqoxy5G02296 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 2.2e-06 56.2 109 36.7
CAN.G1235.35 Capsicum annuum HOM05D000151 ORTHO05D000074 2.2e-06 56.2 151 32.5
Gohir.A04G132412 Gossypium hirsutum HOM05D000151 ORTHO05D000074 2.2e-06 56.2 117 37.6
Lj2P547T18 Lonicera japonica HOM05D000151 ORTHO05D000074 2.2e-06 56.2 139 34.5
QL11p053208 Quercus lobata HOM05D000151 ORTHO05D000074 2.2e-06 56.2 143 35.0
Rhsim13G0207700 Rhododendron simsii HOM05D004351 ORTHO05D005196 2.2e-06 56.2 87 41.4
TAR376G0686 Trochodendron aralioides HOM05D000151 ORTHO05D000074 2.2e-06 56.2 142 29.6
CSS0022996 Camellia sinensis var. sinensis HOM05D000151 ORTHO05D000074 2.9e-06 55.8 136 31.6
Gorai.012G157500 Gossypium raimondii HOM05D000151 ORTHO05D000074 2.9e-06 55.8 117 35.0
Lj1P828T11 Lonicera japonica HOM05D000151 ORTHO05D000074 2.9e-06 55.8 89 41.6
Nitab4.5_0004259g0010 Nicotiana tabacum HOM05D000151 ORTHO05D000074 2.9e-06 55.8 144 32.6
PSO675G1986 Papaver somniferum HOM05D000151 ORTHO05D000074 2.9e-06 55.8 143 34.3
TAR636G2770 Trochodendron aralioides HOM05D000151 ORTHO05D000074 2.9e-06 55.8 135 34.8
Aqoxy7G03306 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 3.8e-06 55.5 88 36.4
Migut.C00911 Erythranthe guttata HOM05D000151 ORTHO05D000074 4.9e-06 55.1 139 30.9
FAN23G2007 Fragaria x ananassa HOM05D000192 ORTHO05D000123 4.9e-06 55.1 82 41.5
QL06p052352 Quercus lobata HOM05D000151 ORTHO05D000074 4.9e-06 55.1 131 35.9
QL11p053223 Quercus lobata HOM05D000151 ORTHO05D000074 4.9e-06 55.1 127 32.3
Rhsim06G0010000 Rhododendron simsii HOM05D000151 ORTHO05D000074 4.9e-06 55.1 135 34.1
Sopen02g027950 Solanum pennellii HOM05D000151 ORTHO05D000074 4.9e-06 55.1 159 31.4
PGSC0003DMG400018632 Solanum tuberosum HOM05D000151 ORTHO05D000074 4.9e-06 55.1 149 33.6
Medtr2g047180 Medicago truncatula HOM05D000151 ORTHO05D000074 6.5e-06 54.7 120 39.2
Aqoxy7G03013 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 8.4e-06 54.3 126 30.2
CAN.G890.14 Capsicum annuum HOM05D000151 ORTHO05D000074 8.4e-06 54.3 149 33.6
FAN26G3061 Fragaria x ananassa HOM05D011470 ORTHO05D016309 8.4e-06 54.3 41 65.9
Gohir.D04G169400 Gossypium hirsutum HOM05D000151 ORTHO05D000074 8.4e-06 54.3 117 35.0
Lj2P486T20 Lonicera japonica HOM05D000151 ORTHO05D000074 8.4e-06 54.3 108 38.9
TAR636G1766 Trochodendron aralioides HOM05D000151 ORTHO05D000074 8.4e-06 54.3 131 35.1


User provided reference genes

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