Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.4e-113 413.3 257 100.0
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 9.6e-51 204.5 537 40.8
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 6.2e-50 201.8 536 40.5
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.8e-49 200.3 534 40.1
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 4.0e-49 199.1 541 39.7
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 5.3e-49 198.7 495 41.6
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.2e-48 197.6 529 40.3
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 7.9e-45 184.9 133 70.7
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 1.8e-44 183.7 133 72.2
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 5.8e-40 168.7 305 40.3
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 1.3e-39 167.5 156 60.3
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 1.3e-39 167.5 156 60.3
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 1.9e-38 163.7 284 40.8
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 5.5e-38 162.2 309 38.5
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 1.0e-36 157.9 145 65.5
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 1.8e-36 157.1 145 61.4
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 3.9e-36 156.0 145 61.4
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 3.9e-36 156.0 145 64.8
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.1e-35 154.5 142 63.4
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 1.1e-35 154.5 92 82.6
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 1.1e-35 154.5 172 51.7
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 1.9e-35 153.7 96 80.2
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 4.3e-35 152.5 92 83.7
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 5.7e-35 152.1 172 50.6
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 5.7e-35 152.1 95 81.1
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 9.7e-35 151.4 144 61.8
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 9.7e-35 151.4 92 81.5
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.6e-34 150.6 147 59.9
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 1.6e-34 150.6 92 84.8
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 2.1e-34 150.2 144 59.7
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 2.1e-34 150.2 143 60.8
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 2.1e-34 150.2 92 82.6
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 2.1e-34 150.2 92 83.7
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 2.8e-34 149.8 92 83.7
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 2.8e-34 149.8 92 83.7
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 2.8e-34 149.8 172 50.6
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 3.7e-34 149.4 92 82.6
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 3.7e-34 149.4 92 82.6
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 4.8e-34 149.1 141 60.3
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 8.2e-34 148.3 96 77.1
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 8.2e-34 148.3 172 48.3
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 8.2e-34 148.3 92 81.5
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 1.1e-33 147.9 172 48.3
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 1.1e-33 147.9 144 59.7
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 1.1e-33 147.9 144 57.6
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 1.4e-33 147.5 143 61.5
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 1.4e-33 147.5 144 56.9
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 1.4e-33 147.5 126 65.9
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 1.4e-33 147.5 178 51.7
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 1.8e-33 147.1 170 52.4
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 2.4e-33 146.7 172 51.2
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 2.4e-33 146.7 172 51.2
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 2.4e-33 146.7 147 59.2
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 3.1e-33 146.4 172 47.7
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 3.1e-33 146.4 102 75.5
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 4.1e-33 146.0 92 82.6
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 4.1e-33 146.0 292 38.0
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 4.1e-33 146.0 172 48.8
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 6.9e-33 145.2 94 77.7
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 6.9e-33 145.2 135 58.5
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 6.9e-33 145.2 164 51.8
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 6.9e-33 145.2 92 79.3
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 6.9e-33 145.2 92 79.3
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 9.0e-33 144.8 92 80.4
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 9.0e-33 144.8 172 49.4
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 1.2e-32 144.4 144 56.9
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 1.2e-32 144.4 92 79.3
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 2.0e-32 143.7 117 65.0
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 3.4e-32 142.9 122 65.6
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 4.5e-32 142.5 92 75.0
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 5.9e-32 142.1 144 60.4
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 1.0e-31 141.4 121 64.5
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 1.0e-31 141.4 92 77.2
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 1.0e-31 141.4 92 77.2
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 1.3e-31 141.0 92 77.2
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 1.3e-31 141.0 96 74.0
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 8.5e-31 138.3 171 50.9
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.9e-30 137.1 92 75.0
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.9e-30 137.1 92 75.0
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 1.9e-30 137.1 120 64.2
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 1.9e-30 137.1 121 65.3
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 1.9e-30 137.1 92 76.1
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 3.2e-30 136.3 92 71.7
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 5.5e-30 135.6 92 77.2
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 5.5e-30 135.6 92 75.0
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 5.5e-30 135.6 144 56.2
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 7.2e-30 135.2 161 50.3
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 7.2e-30 135.2 92 75.0
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 9.3e-30 134.8 174 47.1
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 1.2e-29 134.4 124 61.3
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 1.6e-29 134.0 123 60.2
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 2.7e-29 133.3 92 72.8
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 3.6e-29 132.9 95 69.5
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 3.6e-29 132.9 92 72.8
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 3.6e-29 132.9 99 70.7
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 4.6e-29 132.5 92 72.8
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 4.6e-29 132.5 92 72.8
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 4.6e-29 132.5 92 72.8
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 4.6e-29 132.5 92 72.8
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 4.6e-29 132.5 92 75.0
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 6.1e-29 132.1 92 72.8
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 7.9e-29 131.7 92 71.7
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 7.9e-29 131.7 92 71.7
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 1.0e-28 131.3 92 71.7
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 2.3e-28 130.2 91 72.5
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 3.0e-28 129.8 142 50.7
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 3.9e-28 129.4 91 71.4
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 3.9e-28 129.4 92 71.7
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 3.9e-28 129.4 92 73.9
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 5.1e-28 129.0 95 67.4
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 8.7e-28 128.3 92 70.7
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 1.1e-27 127.9 142 51.4
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 1.1e-27 127.9 92 69.6
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 1.9e-27 127.1 142 50.0
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 1.9e-27 127.1 92 69.6
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 5.7e-27 125.6 91 69.2
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 5.7e-27 125.6 92 66.3
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 9.7e-27 124.8 117 58.1
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 1.3e-26 124.4 91 69.2
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 4.8e-26 122.5 142 49.3
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 1.1e-25 121.3 90 66.7
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.1e-25 121.3 141 51.1
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.1e-25 121.3 141 51.1
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 6.9e-25 118.6 126 54.8
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 5.9e-24 115.5 91 65.9
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 1.3e-23 114.4 115 56.5
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 1.7e-23 114.0 91 63.7
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 8.5e-23 111.7 92 58.7
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 1.9e-22 110.5 92 57.6
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 1.9e-22 110.5 92 57.6
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 1.6e-21 107.5 99 57.6
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 4.6e-21 105.9 91 58.2
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 1.0e-20 104.8 158 43.0
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 1.0e-20 104.8 158 43.0
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 1.8e-20 104.0 102 58.8
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 3.9e-20 102.8 64 87.5
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 3.9e-20 102.8 91 57.1
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 1.5e-19 100.9 89 57.3
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 2.0e-19 100.5 93 61.3
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 5.7e-19 99.0 94 50.0
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 3.7e-18 96.3 80 61.2
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 6.3e-18 95.5 89 55.1
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 8.2e-18 95.1 60 78.3
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 3.1e-17 93.2 58 81.0
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 1.0e-15 88.2 71 62.0
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 4.4e-11 72.8 99 48.5
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 7.4e-11 72.0 126 38.9
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 4.5e-08 62.8 60 50.0
Zm00001eb274810 Zea mays HOM05D003782 ORTHO05D004361 2.2e-07 60.5 48 62.5


User provided reference genes

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