Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G2755 Fragaria x ananassa HOM05D006141 ORTHO05D007670 3.4e-110 401.7 212 100.0
FAN23G3136 Fragaria x ananassa HOM05D006141 ORTHO05D007670 9.2e-108 393.7 212 98.1
FAN19G0972 Fragaria x ananassa HOM05D006141 ORTHO05D007670 1.7e-106 389.4 212 96.2
FAN26G1012 Fragaria x ananassa HOM05D006141 ORTHO05D007670 2.1e-104 382.5 233 89.7
FvH4_1g26260 Fragaria vesca HOM05D006141 ORTHO05D007670 1.1e-103 380.2 212 95.3
RcHm_v2.0_Chr3g0485921 Rosa chinensis HOM05D006141 ORTHO05D007670 6.0e-91 337.8 212 85.8
Prupe.3G003000 Prunus persica HOM05D006141 ORTHO05D007670 1.6e-75 286.6 211 75.4
MD17G1284800 Malus domestica HOM05D006141 ORTHO05D007670 5.1e-74 281.6 209 74.6
Ca_09244_v3 Cicer arietinum L. HOM05D006141 ORTHO05D007670 1.5e-65 253.4 213 64.3
Glyma.19G221200 Glycine max HOM05D006141 ORTHO05D007670 1.5e-65 253.4 213 65.7
Atru.chr5.866 Acer truncatum HOM05D006141 ORTHO05D007670 4.3e-65 251.9 214 66.8
CANSAT25G1526 Cannabis sativa HOM05D006141 ORTHO05D007670 1.3e-64 250.4 212 66.0
Thecc.01G324800 Theobroma cacao HOM05D006141 ORTHO05D007670 2.1e-64 249.6 202 68.8
CiPaw.08G082900 Carya illinoinensis HOM05D006141 ORTHO05D007670 2.8e-64 249.2 211 65.9
Rhsim01G0000200 Rhododendron simsii HOM05D006141 ORTHO05D007670 6.2e-64 248.1 206 65.5
Duzib138G1179 Durio zibethinus HOM05D006141 ORTHO05D007670 1.8e-63 246.5 202 67.3
Ciclev10022224m.g Citrus clementina HOM05D006141 ORTHO05D007670 2.4e-63 246.1 211 62.6
Glyma.03G224200 Glycine max HOM05D006141 ORTHO05D007670 3.1e-63 245.7 213 64.3
Cfa004908 Carpinus fangiana HOM05D006141 ORTHO05D007670 4.1e-63 245.4 211 64.5
Potri.014G112900 Populus trichocarpa HOM05D006141 ORTHO05D007670 4.1e-63 245.4 202 67.8
Manes.01G234600 Manihot esculenta HOM05D006141 ORTHO05D007670 6.9e-63 244.6 211 66.4
Sabra14G0083000 Salix brachista HOM05D006141 ORTHO05D007670 2.0e-62 243.0 211 65.4
TPR.G2465 Trifolium pratense HOM05D006141 ORTHO05D007670 2.9e-61 239.2 213 62.0
Medtr7g110620 Medicago truncatula HOM05D006141 ORTHO05D007670 3.8e-61 238.8 213 62.4
Psat3g016880 Pisum sativum HOM05D006141 ORTHO05D007670 6.5e-61 238.0 213 62.0
Nn4g25355 Nelumbo nucifera HOM05D006141 ORTHO05D007670 1.1e-60 237.3 203 65.5
QL12p034897 Quercus lobata HOM05D006141 ORTHO05D007670 1.9e-60 236.5 211 63.0
Phvul.001G218100 Phaseolus vulgaris HOM05D006141 ORTHO05D007670 5.5e-60 235.0 204 62.7
TWI59G0338 Tripterygium wilfordii HOM05D006141 ORTHO05D007670 1.6e-59 233.4 211 61.1
VMungo1383G2247 Vigna mungo HOM05D006141 ORTHO05D007670 2.1e-59 233.0 204 62.7
Gohir.A08G036900 Gossypium hirsutum HOM05D006141 ORTHO05D007670 2.7e-59 232.6 202 65.3
GSVIVG01028253001 Vitis vinifera HOM05D006141 ORTHO05D007670 4.6e-59 231.9 202 62.4
Gohir.D08G047500 Gossypium hirsutum HOM05D006141 ORTHO05D007670 1.3e-58 230.3 202 64.4
TAR362G0148 Trochodendron aralioides HOM05D006141 ORTHO05D007670 1.8e-58 229.9 203 64.5
Lalb_Chr18g0046401 Lupinus albus HOM05D006141 ORTHO05D007670 3.0e-58 229.2 216 60.6
Sopen01g030090 Solanum pennellii HOM05D006141 ORTHO05D007670 3.0e-58 229.2 225 59.6
Aqoxy2G02498 Aquilegia oxysepala HOM05D006141 ORTHO05D007670 5.1e-58 228.4 206 65.0
Gorai.004G046700 Gossypium raimondii HOM05D006141 ORTHO05D007670 6.7e-58 228.0 202 63.9
Actinidia20966 Actinidia chinensis HOM05D006141 ORTHO05D007670 3.7e-56 222.2 211 62.1
Solyc01g068150.3 Solanum lycopersicum HOM05D006141 ORTHO05D007670 1.4e-55 220.3 215 60.0
PGR042G1406 Punica granatum HOM05D006141 ORTHO05D007670 1.8e-55 219.9 203 65.0
COL.COLO4_23134 Corchorus olitorius HOM05D006141 ORTHO05D007670 3.1e-55 219.2 213 60.1
DCAR_012301 Daucus carota HOM05D006141 ORTHO05D007670 4.1e-55 218.8 215 60.0
CSS0000718 Camellia sinensis var. sinensis HOM05D006141 ORTHO05D007670 5.3e-55 218.4 177 66.1
Nitab4.5_0000222g0340 Nicotiana tabacum HOM05D006141 ORTHO05D007670 6.9e-55 218.0 227 57.3
Hma1.2p1_0408F.1_g146310 Hydrangea macrophylla HOM05D006141 ORTHO05D007670 1.0e-53 214.2 202 60.9
MBI18_g10378_MAGBIO Magnolia biondii HOM05D006141 ORTHO05D007670 1.0e-53 214.2 205 61.5
arahy.Tifrunner.gnm1.ann1.YFT3VK Arachis hypogaea HOM05D006141 ORTHO05D007670 2.2e-53 213.0 230 56.1
AL5G44810 Arabidopsis lyrata HOM05D006141 ORTHO05D007670 2.9e-53 212.6 214 59.3
Migut.D00015 Erythranthe guttata HOM05D006141 ORTHO05D007670 2.9e-53 212.6 216 57.9
arahy.Tifrunner.gnm1.ann1.3ZI6V8 Arachis hypogaea HOM05D006141 ORTHO05D007670 3.8e-53 212.2 227 54.6
AUR62004945 Chenopodium quinoa HOM05D006141 ORTHO05D007670 6.5e-53 211.5 224 56.2
ClCG01G007160 Citrullus lanatus HOM05D006141 ORTHO05D007670 6.5e-53 211.5 213 58.7
arahy.Tifrunner.gnm1.ann1.XETR8R Arachis hypogaea HOM05D006141 ORTHO05D007670 8.5e-53 211.1 228 54.8
AUR62001013 Chenopodium quinoa HOM05D006141 ORTHO05D007670 8.5e-53 211.1 224 56.2
Carub.0005s2889 Capsella rubella HOM05D006141 ORTHO05D007670 3.2e-52 209.1 219 59.8
PSO210G0852 Papaver somniferum HOM05D006141 ORTHO05D007670 4.2e-52 208.8 205 60.0
MSTRG.21729 Avicennia marina HOM05D006141 ORTHO05D007670 5.5e-52 208.4 212 57.1
AT3G62140 Arabidopsis thaliana HOM05D006141 ORTHO05D007670 1.2e-51 207.2 214 58.4
THA.LOC104817433 Tarenaya hassleriana HOM05D006141 ORTHO05D007670 1.2e-51 207.2 208 58.2
PSO761G0605 Papaver somniferum HOM05D006141 ORTHO05D007670 1.6e-51 206.8 205 60.0
SGA_v2.0_scaffold417G51257 Striga asiatica HOM05D006141 ORTHO05D007670 3.6e-51 205.7 219 56.2
CARHR172480 Cardamine hirsuta HOM05D006141 ORTHO05D007670 7.9e-51 204.5 205 60.0
CsaV3_5G018600 Cucumis sativus L. HOM05D006141 ORTHO05D007670 1.4e-50 203.8 213 57.7
Thhalv10006233m.g Eutrema salsugineum HOM05D006141 ORTHO05D007670 1.4e-50 203.8 222 57.7
Ah.11g045950 Amaranthus hybridus HOM05D006141 ORTHO05D007670 1.8e-50 203.4 218 57.3
ATR0796G189 Amborella trichopoda HOM05D006141 ORTHO05D007670 1.8e-50 203.4 204 57.4
EL10Ac6g14128 Beta vulgaris HOM05D006141 ORTHO05D007670 3.0e-50 202.6 218 56.9
MELO3C005194.2 Cucumis melo HOM05D006141 ORTHO05D007670 5.1e-50 201.8 213 56.8
Sed0006054 Sechium edule HOM05D006141 ORTHO05D007670 5.1e-50 201.8 203 58.6
Aa31LG10G16170 Aethionema arabicum HOM05D006141 ORTHO05D007670 8.8e-50 201.1 217 57.1
Dinv33165 Davidia involucrata HOM05D006141 ORTHO05D007670 4.3e-49 198.7 210 54.8
CDE09G0801 Ceratophyllum demersum HOM05D006141 ORTHO05D007670 5.7e-49 198.4 203 59.6
HanXRQChr06g0167971 Helianthus annuus HOM05D006141 ORTHO05D007670 5.7e-49 198.4 202 57.4
ECA236G4451 Erigeron canadensis HOM05D006141 ORTHO05D007670 6.3e-48 194.9 210 55.2
Cc01_g21800 Coffea canephora HOM05D006141 ORTHO05D007670 2.4e-47 193.0 213 55.9
Peaxi162Scf00309g01021 Petunia axillaris HOM05D006141 ORTHO05D007670 3.1e-47 192.6 217 53.0
Sp5g01230 Schrenkiella parvula HOM05D006141 ORTHO05D007670 3.1e-47 192.6 215 56.3
HPP92_018284 Vanilla planifolia HOM05D006141 ORTHO05D007670 7.7e-46 188.0 202 56.4
SalBow6G5482 Salvia bowleyana HOM05D006141 ORTHO05D007670 1.7e-45 186.8 212 53.3
C06p28110 Brassica napus HOM05D006141 ORTHO05D007670 8.5e-45 184.5 213 53.1
BolC6t37977H Brassica oleracea HOM05D006141 ORTHO05D007670 8.5e-45 184.5 213 53.1
BcaC07g40706 Brassica carinata HOM05D006141 ORTHO05D007670 1.1e-44 184.1 205 55.1
C08p37090 Brassica napus HOM05D006141 ORTHO05D007670 3.2e-44 182.6 205 54.6
BolC8t51287H Brassica oleracea HOM05D006141 ORTHO05D007670 3.2e-44 182.6 205 54.6
Rhsim01G0085900 Rhododendron simsii HOM05D006141 ORTHO05D007670 9.4e-44 181.0 210 50.0
A07p25870 Brassica napus HOM05D006141 ORTHO05D007670 3.6e-43 179.1 213 53.1
Os01g0321800 Oryza sativa ssp. japonica HOM05D006141 ORTHO05D007670 7.9e-43 177.9 211 52.6
Lsat_1_v5_gn_8_167241 Lactuca sativa HOM05D006141 ORTHO05D007670 1.0e-42 177.6 217 53.5
A09p54230 Brassica napus HOM05D006141 ORTHO05D007670 1.8e-42 176.8 207 55.1
BraA09t40835Z Brassica rapa HOM05D006141 ORTHO05D007670 1.8e-42 176.8 207 55.1
Cpa.g.sc57.10 Carica papaya HOM05D006141 ORTHO05D007670 2.3e-42 176.4 128 72.7
BcaB02g07358 Brassica carinata HOM05D002572 ORTHO05D002800 5.1e-42 175.3 199 56.8
Rhsim01G0080900 Rhododendron simsii HOM05D006141 ORTHO05D007670 5.1e-42 175.3 177 58.2
SEGI_07518 Sequoiadendron giganteum HOM05D006141 ORTHO05D007670 1.5e-41 173.7 204 51.5
unitig_578.g16642 Utricularia gibba HOM05D006141 ORTHO05D007670 3.7e-40 169.1 204 50.0
Hma1.2p1_0408F.1_g146320 Hydrangea macrophylla HOM05D006141 ORTHO05D007670 1.1e-39 167.5 111 78.4
CAN.G100.55 Capsicum annuum HOM05D006141 ORTHO05D007670 1.2e-38 164.1 122 70.5
Zm00001eb340460 Zea mays HOM05D006141 ORTHO05D007670 1.5e-36 157.1 113 70.8
Lj1g0014608 Lotus japonicus HOM05D006141 ORTHO05D007670 1.9e-36 156.8 211 47.4
BcaC08g45187 Brassica carinata HOM05D006141 ORTHO05D007670 2.5e-36 156.4 123 69.1
Rhsim01G0086800 Rhododendron simsii HOM05D006141 ORTHO05D007670 3.0e-34 149.4 211 47.4
Ciclev10030010m.g Citrus clementina HOM05D006141 ORTHO05D007670 2.0e-33 146.7 203 47.3
Ciclev10030079m.g Citrus clementina HOM05D006141 ORTHO05D007670 5.3e-31 138.7 187 45.5
Ciclev10030249m.g Citrus clementina HOM05D006141 ORTHO05D007670 9.1e-31 137.9 187 46.0
BcaB02g07360 Brassica carinata HOM05D006141 ORTHO05D007670 3.8e-29 132.5 91 73.6
BraA07t30234Z Brassica rapa HOM05D006141 ORTHO05D007670 8.5e-29 131.3 88 76.1
Lj2A1216T56 Lonicera japonica HOM05D006141 ORTHO05D007670 3.6e-27 125.9 80 80.0
Pp3c2_35190 Physcomitrium patens HOM05D006141 ORTHO05D007670 4.4e-25 119.0 204 39.2
Mapoly0026s0067 Marchantia polymorpha HOM05D006141 ORTHO05D007670 7.5e-25 118.2 213 39.9
Rhsim12G0140700 Rhododendron simsii HOM05D006141 ORTHO05D007670 1.5e-20 104.0 153 47.1
Haze_05144 Corylus avellana HOM05D006141 ORTHO05D007670 7.2e-20 101.7 211 36.0
Rhsim01G0082900 Rhododendron simsii HOM05D006141 ORTHO05D007670 6.1e-19 98.6 167 41.9
SHI33165 Sapria himalayana HOM05D006141 ORTHO05D007670 9.8e-17 91.3 123 45.5
Nitab4.5_0008976g0040 Nicotiana tabacum HOM05D006141 ORTHO05D007670 3.8e-13 79.3 126 43.7
Rhsim01G0081900 Rhododendron simsii HOM05D006141 ORTHO05D007670 1.9e-12 77.0 55 72.7
FAN03G1225 Fragaria x ananassa HOM05D006141 ORTHO05D007670 2.5e-12 76.6 44 79.5
CBR_g57079 Chara braunii HOM05D006141 ORTHO05D007670 5.6e-12 75.5 67 58.2
BcaC09g48717 Brassica carinata HOM05D001214 ORTHO05D001029 6.1e-11 72.0 45 75.6
AagrBONN_evm.TU.Sc2ySwM_368.766 Anthoceros agrestis HOM05D006141 ORTHO05D007670 5.2e-10 68.9 152 36.2
DCAR_012300 Daucus carota HOM05D006141 ORTHO05D007670 1.3e-08 64.3 46 67.4
Atru.chr5.867 Acer truncatum HOM05D006141 ORTHO05D007670 1.8e-07 60.5 88 42.0
Rhsim01G0083000 Rhododendron simsii HOM05D006141 ORTHO05D007670 1.8e-07 60.5 113 43.4
Cpa.g.sc57.9 Carica papaya HOM05D006141 ORTHO05D007670 1.6e-06 57.4 78 44.9
Cre11.g477250 Chlamydomonas reinhardtii HOM05D006141 ORTHO05D007670 2.7e-06 56.6 101 36.6
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 5.9e-06 55.5 103 39.8


User provided reference genes

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