Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G2700 Fragaria x ananassa HOM05D001562 ORTHO05D001437 9.5e-90 334.0 232 100.0
FvH4_1g29400 Fragaria vesca HOM05D001562 ORTHO05D001437 2.3e-83 312.8 234 93.2
FAN19G2359 Fragaria x ananassa HOM05D001562 ORTHO05D001437 2.3e-83 312.8 234 93.2
FAN26G1485 Fragaria x ananassa HOM05D001562 ORTHO05D001437 4.0e-80 302.0 229 92.6
RcHm_v2.0_Chr3g0495551 Rosa chinensis HOM05D001562 ORTHO05D001437 8.1e-73 277.7 242 82.2
FAN23G1244 Fragaria x ananassa HOM05D001562 ORTHO05D001437 9.9e-71 270.8 228 86.4
Prupe.7G025900 Prunus persica HOM05D001562 ORTHO05D001437 3.8e-46 189.1 273 64.8
MD14G1012500 Malus domestica HOM05D001562 ORTHO05D001437 4.6e-44 182.2 264 65.2
MD12G1014900 Malus domestica HOM05D001562 ORTHO05D001437 4.0e-40 169.1 262 64.1
Atru.chr2.1611 Acer truncatum HOM05D001562 ORTHO05D001437 1.9e-34 150.2 259 57.9
Haze_20368 Corylus avellana HOM05D001562 ORTHO05D001437 5.6e-34 148.7 261 56.7
Cfa019883 Carpinus fangiana HOM05D001562 ORTHO05D001437 1.3e-33 147.5 261 55.6
QL07p016005 Quercus lobata HOM05D001562 ORTHO05D001437 3.7e-33 146.0 245 54.3
Ciclev10031118m.g Citrus clementina HOM05D001562 ORTHO05D001437 2.4e-32 143.3 246 55.3
TWI34G0920 Tripterygium wilfordii HOM05D001562 ORTHO05D001437 4.5e-31 139.0 264 55.7
Duzib128G1788 Durio zibethinus HOM05D001562 ORTHO05D001437 2.2e-30 136.7 255 58.8
Duzib177G1059 Durio zibethinus HOM05D001562 ORTHO05D001437 1.4e-29 134.0 260 56.5
Thecc.05G236800 Theobroma cacao HOM05D001562 ORTHO05D001437 9.3e-29 131.3 256 57.0
Lalb_Chr06g0174171 Lupinus albus HOM05D001562 ORTHO05D001437 2.3e-27 126.7 264 47.0
CiPaw.10G044900 Carya illinoinensis HOM05D001562 ORTHO05D001437 3.9e-27 125.9 269 56.1
CANSAT64G1075 Cannabis sativa HOM05D001562 ORTHO05D001437 5.1e-27 125.6 253 51.4
Eucgr.A02162 Eucalyptus grandis HOM05D001562 ORTHO05D001437 5.1e-27 125.6 257 50.2
Gorai.007G252400 Gossypium raimondii HOM05D001562 ORTHO05D001437 1.1e-26 124.4 275 52.0
CiPaw.09G053200 Carya illinoinensis HOM05D001562 ORTHO05D001437 1.5e-26 124.0 265 55.5
Gohir.D11G238400 Gossypium hirsutum HOM05D001562 ORTHO05D001437 2.5e-26 123.2 273 52.4
Glyma.03G004900 Glycine max HOM05D001562 ORTHO05D001437 9.7e-26 121.3 248 44.4
Glyma.05G087600 Glycine max HOM05D001562 ORTHO05D001437 9.7e-26 121.3 265 46.8
TWI32G0837 Tripterygium wilfordii HOM05D001562 ORTHO05D001437 9.7e-26 121.3 252 57.1
Duzib106G1733 Durio zibethinus HOM05D001562 ORTHO05D001437 3.7e-25 119.4 191 56.0
ClCG10G016720 Citrullus lanatus HOM05D001562 ORTHO05D001437 6.3e-25 118.6 196 49.5
CsaV3_3G039620 Cucumis sativus L. HOM05D001562 ORTHO05D001437 6.3e-25 118.6 190 48.4
Lalb_Chr21g0317331 Lupinus albus HOM05D001562 ORTHO05D001437 6.3e-25 118.6 257 46.7
Dinv14556 Davidia involucrata HOM05D001562 ORTHO05D001437 2.4e-24 116.7 245 53.1
Lalb_Chr14g0365071 Lupinus albus HOM05D001562 ORTHO05D001437 2.4e-24 116.7 197 46.7
VMungo1383G0082 Vigna mungo HOM05D001562 ORTHO05D001437 6.9e-24 115.2 192 45.8
MELO3C009704.2 Cucumis melo HOM05D001562 ORTHO05D001437 2.0e-23 113.6 187 49.7
Manes.09G134600 Manihot esculenta HOM05D001562 ORTHO05D001437 2.6e-23 113.2 254 57.1
SalBow1G3436 Salvia bowleyana HOM05D001562 ORTHO05D001437 3.4e-23 112.8 229 54.1
Gohir.A11G224900 Gossypium hirsutum HOM05D001562 ORTHO05D001437 4.5e-23 112.5 193 50.3
Glyma.19G121100 Glycine max HOM05D001562 ORTHO05D001437 7.6e-23 111.7 248 50.8
COL.COLO4_33469 Corchorus olitorius HOM05D001562 ORTHO05D001437 2.9e-22 109.8 139 53.2
Sed0010319 Sechium edule HOM05D001562 ORTHO05D001437 5.0e-22 109.0 241 54.8
Nn2g14206 Nelumbo nucifera HOM05D001562 ORTHO05D001437 2.5e-21 106.7 176 51.1
Solyc11g012740.2 Solanum lycopersicum HOM05D001562 ORTHO05D001437 2.5e-21 106.7 191 46.1
Sopen11g007480 Solanum pennellii HOM05D001562 ORTHO05D001437 2.5e-21 106.7 191 46.1
Ca_04454_v3 Cicer arietinum L. HOM05D001562 ORTHO05D001437 3.2e-21 106.3 272 45.6
Psat3g084560 Pisum sativum HOM05D001562 ORTHO05D001437 3.2e-21 106.3 239 46.9
arahy.Tifrunner.gnm1.ann1.F8BNUE Arachis hypogaea HOM05D001562 ORTHO05D001437 4.2e-21 105.9 189 45.0
arahy.Tifrunner.gnm1.ann1.UT2HDF Arachis hypogaea HOM05D001562 ORTHO05D001437 4.2e-21 105.9 189 45.0
CSS0049266 Camellia sinensis var. sinensis HOM05D013713 ORTHO05D000001 2.1e-20 103.6 134 54.5
Nitab4.5_0001296g0060 Nicotiana tabacum HOM05D001562 ORTHO05D001437 2.1e-20 103.6 262 47.7
TPR.G33954 Trifolium pratense HOM05D001562 ORTHO05D001437 4.6e-20 102.4 263 39.9
DCAR_013503 Daucus carota HOM05D001562 ORTHO05D001437 7.9e-20 101.7 197 51.3
TPR.G20663 Trifolium pratense HOM05D001562 ORTHO05D001437 1.4e-19 100.9 243 48.6
Medtr7g087450 Medicago truncatula HOM05D001562 ORTHO05D001437 1.8e-19 100.5 219 47.9
Hma1.2p1_0165F.1_g073360 Hydrangea macrophylla HOM05D001562 ORTHO05D001437 2.3e-19 100.1 173 54.3
Sed0017141 Sechium edule HOM05D001562 ORTHO05D001437 5.1e-19 99.0 196 43.4
Ca_03432_v3 Cicer arietinum L. HOM05D001562 ORTHO05D001437 1.1e-18 97.8 179 49.2
EL10Ac5g11646 Beta vulgaris HOM05D001562 ORTHO05D001437 1.9e-18 97.1 199 44.2
TAR633G0613 Trochodendron aralioides HOM05D001562 ORTHO05D001437 2.5e-18 96.7 196 50.0
Phvul.001G102901 Phaseolus vulgaris HOM05D001562 ORTHO05D001437 3.3e-18 96.3 193 42.5
Oeu039190.1 Olea europaea HOM05D001562 ORTHO05D001437 4.3e-18 95.9 205 43.4
Medtr6g027180 Medicago truncatula HOM05D001562 ORTHO05D001437 9.7e-18 94.7 271 45.0
Psat1g088240 Pisum sativum HOM05D001562 ORTHO05D001437 2.2e-17 93.6 254 45.3
MSTRG.6265 Avicennia marina HOM05D001562 ORTHO05D001437 4.8e-17 92.4 186 45.2
Peaxi162Scf00827g00063 Petunia axillaris HOM05D001562 ORTHO05D001437 4.8e-17 92.4 199 48.2
MSTRG.26199 Avicennia marina HOM05D001562 ORTHO05D001437 1.1e-16 91.3 185 48.1
AUR62037076 Chenopodium quinoa HOM05D001562 ORTHO05D001437 2.4e-16 90.1 172 44.2
Lj1g0001304 Lotus japonicus HOM05D001562 ORTHO05D001437 2.4e-16 90.1 198 46.5
PGR042G2556 Punica granatum HOM05D001562 ORTHO05D001437 2.6e-15 86.7 259 42.9
DCAR_016950 Daucus carota HOM05D001562 ORTHO05D001437 1.7e-14 84.0 259 38.6
Dinv37043 Davidia involucrata HOM05D001562 ORTHO05D001437 1.4e-13 80.9 88 56.8
Cc00_g08630 Coffea canephora HOM05D001562 ORTHO05D001437 1.4e-11 74.3 140 44.3
Sc01g0005840 Simmondsia chinensis HOM05D001562 ORTHO05D001437 1.4e-11 74.3 184 37.5
MBI19_g15084_MAGBIO Magnolia biondii HOM05D001562 ORTHO05D001437 4.4e-10 69.3 165 40.6
RhsimUnG0023000 Rhododendron simsii HOM05D001562 ORTHO05D001437 4.4e-10 69.3 187 42.2
Migut.K00188 Erythranthe guttata HOM05D001562 ORTHO05D001437 9.7e-10 68.2 184 42.4
Aqoxy1G00005 Aquilegia oxysepala HOM05D001562 ORTHO05D001437 8.2e-09 65.1 184 44.6
HanXRQChr10g0298571 Helianthus annuus HOM05D001562 ORTHO05D001437 9.1e-08 61.6 198 39.4
AUR62036494 Chenopodium quinoa HOM05D001562 ORTHO05D001437 2.0e-07 60.5 89 47.2
ECA247G2619 Erigeron canadensis HOM05D001562 ORTHO05D001437 4.5e-07 59.3 177 40.7
Oeu036469.1 Olea europaea HOM05D001562 ORTHO05D001437 7.7e-07 58.5 177 36.2


User provided reference genes

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