Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G1675 Fragaria x ananassa HOM05D015974 ORTHO05D008148 1.3e-45 186.0 95 100.0
FAN28G2668 Fragaria x ananassa HOM05D015974 ORTHO05D008148 1.3e-45 186.0 95 100.0
FvH4_1g17450 Fragaria vesca HOM05D015974 ORTHO05D008148 2.9e-45 184.9 95 98.9
FAN23G1252 Fragaria x ananassa HOM05D015974 ORTHO05D008148 5.0e-45 184.1 95 98.9
RcHm_v2.0_Chr5g0053551 Rosa chinensis HOM05D015974 ORTHO05D008148 3.4e-38 161.4 95 86.3
FAN23G0980 Fragaria x ananassa HOM05D015974 ORTHO05D008148 4.4e-33 144.4 110 75.5
RcHm_v2.0_Chr5g0053611 Rosa chinensis HOM05D015974 ORTHO05D008148 2.2e-21 105.5 58 91.4
MD15G1295400 Malus domestica HOM05D007513 ORTHO05D008148 1.6e-14 82.8 93 51.6
MD02G1183800 Malus domestica HOM05D007513 ORTHO05D008148 1.5e-12 76.3 90 53.3
TWI73G0368 Tripterygium wilfordii HOM05D007513 ORTHO05D008148 1.9e-12 75.9 93 47.3
Duzib264G1124 Durio zibethinus HOM05D007513 ORTHO05D008148 5.5e-12 74.3 93 48.4
Ciclev10023109m.g Citrus clementina HOM05D007513 ORTHO05D008148 7.2e-12 73.9 95 45.3
Prupe.6G222400 Prunus persica HOM05D007513 ORTHO05D008148 1.6e-11 72.8 67 56.7
Thecc.01G071100 Theobroma cacao HOM05D007513 ORTHO05D008148 1.6e-11 72.8 95 47.4
Potri.009G004400 Populus trichocarpa HOM05D007513 ORTHO05D008148 2.1e-11 72.4 84 52.4
Dinv26918 Davidia involucrata HOM05D007513 ORTHO05D008148 3.6e-11 71.6 93 47.3
TWI09G0373 Tripterygium wilfordii HOM05D007513 ORTHO05D008148 3.6e-11 71.6 85 49.4
Dinv04064 Davidia involucrata HOM05D007513 ORTHO05D008148 4.7e-11 71.2 93 48.4
CSS0045444 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 8.0e-11 70.5 90 44.4
CSS0003656 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 1.4e-10 69.7 90 44.4
Hma1.2p1_0730F.1_g209790 Hydrangea macrophylla HOM05D007513 ORTHO05D008148 2.3e-10 68.9 92 44.6
CsaV3_3G041080 Cucumis sativus L. HOM05D007513 ORTHO05D008148 3.0e-10 68.6 60 60.0
Atru.chr3.153 Acer truncatum HOM05D007513 ORTHO05D008148 4.0e-10 68.2 93 40.9
ClCG10G015420 Citrullus lanatus HOM05D007513 ORTHO05D008148 5.2e-10 67.8 60 58.3
Eucgr.A01208 Eucalyptus grandis HOM05D007513 ORTHO05D008148 5.2e-10 67.8 93 46.2
CANSAT01G0833 Cannabis sativa HOM05D007513 ORTHO05D008148 6.8e-10 67.4 82 45.1
Atru.chr3.182 Acer truncatum HOM05D007513 ORTHO05D008148 8.8e-10 67.0 93 40.9
Manes.13G112700 Manihot esculenta HOM05D007513 ORTHO05D008148 8.8e-10 67.0 106 44.3
CiPaw.02G003300 Carya illinoinensis HOM05D007513 ORTHO05D008148 2.0e-09 65.9 93 41.9
CSS0005454 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 2.6e-09 65.5 93 44.1
CSS0011696 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 2.6e-09 65.5 93 44.1
Carub.0004s0224 Capsella rubella HOM05D007513 ORTHO05D008148 3.4e-09 65.1 87 44.8
HanXRQChr08g0219071 Helianthus annuus HOM05D007513 ORTHO05D008148 3.4e-09 65.1 93 41.9
SGA_v2.0_scaffold486G52374 Striga asiatica HOM05D007513 ORTHO05D008148 3.4e-09 65.1 88 42.0
COL.COLO4_11560 Corchorus olitorius HOM05D007513 ORTHO05D008148 4.4e-09 64.7 95 40.0
DCAR_017173 Daucus carota HOM05D007513 ORTHO05D008148 4.4e-09 64.7 57 56.1
HanXRQChr08g0219141 Helianthus annuus HOM05D007513 ORTHO05D008148 4.4e-09 64.7 93 41.9
FvH4_5g27530 Fragaria vesca HOM05D015974 ORTHO05D046478 5.7e-09 64.3 35 91.4
PGR102G1378 Punica granatum HOM05D007513 ORTHO05D008148 5.7e-09 64.3 59 55.9
Nitab4.5_0000714g0120 Nicotiana tabacum HOM05D007513 ORTHO05D008148 7.5e-09 63.9 57 56.1
Sed0010624 Sechium edule HOM05D007513 ORTHO05D008148 7.5e-09 63.9 57 59.6
Actinidia03699 Actinidia chinensis HOM05D007513 ORTHO05D008148 9.8e-09 63.5 93 41.9
Thhalv10027185m.g Eutrema salsugineum HOM05D007513 ORTHO05D008148 9.8e-09 63.5 93 40.9
Glyma.06G321800 Glycine max HOM05D007513 ORTHO05D008148 9.8e-09 63.5 59 52.5
FAN18G3197 Fragaria x ananassa HOM05D015974 ORTHO05D046478 1.3e-08 63.2 35 88.6
Lsat_1_v5_gn_8_19701 Lactuca sativa HOM05D007513 ORTHO05D008148 1.7e-08 62.8 95 44.2
unitig_0.g544 Utricularia gibba HOM05D007513 ORTHO05D008148 1.7e-08 62.8 57 54.4
Medtr4g088715 Medicago truncatula HOM05D007513 ORTHO05D008148 2.2e-08 62.4 62 51.6
Nitab4.5_0001417g0120 Nicotiana tabacum HOM05D007513 ORTHO05D008148 2.2e-08 62.4 57 54.4
Psat6g076840 Pisum sativum HOM05D007513 ORTHO05D008148 2.2e-08 62.4 64 50.0
Ca_18552_v3 Cicer arietinum L. HOM05D007513 ORTHO05D008148 2.8e-08 62.0 56 51.8
ECA233G3995 Erigeron canadensis HOM05D007513 ORTHO05D008148 3.7e-08 61.6 95 42.1
Psat6g024240 Pisum sativum HOM05D007513 ORTHO05D008148 4.9e-08 61.2 59 47.5
Cc04_g16170 Coffea canephora HOM05D007513 ORTHO05D008148 1.8e-07 59.3 60 48.3
arahy.Tifrunner.gnm1.ann1.LDCV9W Arachis hypogaea HOM05D007513 ORTHO05D008148 2.4e-07 58.9 91 38.5
Phvul.005G004100 Phaseolus vulgaris HOM05D007513 ORTHO05D008148 2.4e-07 58.9 59 47.5
TPR.G24448 Trifolium pratense HOM05D007513 ORTHO05D008148 2.4e-07 58.9 88 40.9
vmacro07203 Vaccinium macrocarpon HOM05D007513 ORTHO05D008148 3.1e-07 58.5 59 50.8
Lsat_1_v5_gn_8_17020 Lactuca sativa HOM05D007513 ORTHO05D008148 4.1e-07 58.2 94 41.5
Solyc03g044080.4 Solanum lycopersicum HOM05D007513 ORTHO05D008148 4.1e-07 58.2 57 52.6
vmacro14398 Vaccinium macrocarpon HOM05D007513 ORTHO05D008148 4.1e-07 58.2 97 39.2
arahy.Tifrunner.gnm1.ann1.P2RW0X Arachis hypogaea HOM05D007513 ORTHO05D008148 5.4e-07 57.8 56 50.0
arahy.Tifrunner.gnm1.ann1.QIRY5C Arachis hypogaea HOM05D007513 ORTHO05D008148 5.4e-07 57.8 56 50.0
C03p79260 Brassica napus HOM05D007513 ORTHO05D008148 5.4e-07 57.8 67 50.7
Gohir.D03G027900 Gossypium hirsutum HOM05D007513 ORTHO05D008148 5.4e-07 57.8 93 40.9
Rhsim11G0028000 Rhododendron simsii HOM05D007513 ORTHO05D008148 7.0e-07 57.4 92 40.2
BcaNung02934 Brassica carinata HOM05D014277 ORTHO05D008148 9.2e-07 57.0 95 43.2
AUR62016920 Chenopodium quinoa HOM05D007513 ORTHO05D008148 9.2e-07 57.0 57 52.6
BolC3t20170H Brassica oleracea HOM05D007513 ORTHO05D008148 1.2e-06 56.6 67 49.3
BraA08t34236Z Brassica rapa HOM05D007513 ORTHO05D008148 1.2e-06 56.6 67 49.3
Sc16g0003000 Simmondsia chinensis HOM05D007513 ORTHO05D008148 1.2e-06 56.6 94 41.5
arahy.Tifrunner.gnm1.ann1.8F1CK2 Arachis hypogaea HOM05D007513 ORTHO05D008148 1.6e-06 56.2 91 38.5
A08p22690 Brassica napus HOM05D007513 ORTHO05D008148 1.6e-06 56.2 96 41.7
SalBow6G0964 Salvia bowleyana HOM05D007513 ORTHO05D008148 1.6e-06 56.2 93 38.7
MELO3C030975.2 Cucumis melo HOM05D007513 ORTHO05D008148 2.0e-06 55.8 50 58.0
VMungo1080G1633 Vigna mungo HOM05D007513 ORTHO05D008148 2.0e-06 55.8 59 47.5
C07p62480 Brassica napus HOM05D014277 ORTHO05D008148 2.7e-06 55.5 57 50.9
Peaxi162Scf00118g02024 Petunia axillaris HOM05D007513 ORTHO05D008148 2.7e-06 55.5 53 52.8
DCAR_013160 Daucus carota HOM05D007513 ORTHO05D008148 3.5e-06 55.1 57 52.6
Glyma.04G112900 Glycine max HOM05D007513 ORTHO05D008148 3.5e-06 55.1 54 50.0
BcaB03g12338 Brassica carinata HOM05D007513 ORTHO05D008148 4.5e-06 54.7 92 38.0
BcaC01g00397 Brassica carinata HOM05D007513 ORTHO05D008148 4.5e-06 54.7 92 40.2
CDE07G2080 Ceratophyllum demersum HOM05D007513 ORTHO05D008148 4.5e-06 54.7 57 47.4
BcaNung02064 Brassica carinata HOM05D014277 ORTHO05D008148 5.9e-06 54.3 57 49.1
PGSC0003DMG400014868 Solanum tuberosum HOM05D007513 ORTHO05D008148 7.8e-06 53.9 57 47.4
THA.LOC104807627 Tarenaya hassleriana HOM05D007513 ORTHO05D008148 7.8e-06 53.9 61 45.9


User provided reference genes

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