Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G2623 Fragaria x ananassa HOM05D003347 ORTHO05D003821 1.3e-104 383.6 300 100.0
TWI31G0129 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.9e-26 124.0 184 53.3
Hund07201 Selenicereus undatus HOM05D003347 ORTHO05D003821 1.2e-23 114.8 184 59.2
AUR62006920 Chenopodium quinoa HOM05D003347 ORTHO05D003821 4.2e-21 106.3 128 75.0
RcHm_v2.0_Chr2g0123211 Rosa chinensis HOM05D003347 ORTHO05D003821 4.2e-21 106.3 163 63.2
TWI79G0161 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 2.7e-20 103.6 179 52.0
PSO063G2612 Papaver somniferum HOM05D003347 ORTHO05D003821 1.0e-19 101.7 179 57.0
FAN19G3034 Fragaria x ananassa HOM05D003347 ORTHO05D003821 6.6e-19 99.0 180 60.6
Lj4A831G75 Lonicera japonica HOM05D003347 ORTHO05D003821 8.7e-19 98.6 101 82.2
Nitab4.5_0000496g0140 Nicotiana tabacum HOM05D003347 ORTHO05D003821 8.7e-19 98.6 185 58.9
Prupe.4G280500 Prunus persica HOM05D003347 ORTHO05D003821 3.3e-18 96.7 187 64.2
SGA_v2.0_scaffold189G40392 Striga asiatica HOM05D000087 ORTHO05D000793 7.3e-18 95.5 187 57.2
CDE08G0312 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 1.3e-17 94.7 179 53.1
Eucgr.H05071 Eucalyptus grandis HOM05D003347 ORTHO05D003821 1.3e-17 94.7 167 68.9
FvH4_1g25270 Fragaria vesca HOM05D003347 ORTHO05D003821 2.1e-17 94.0 180 57.8
MD15G1137800 Malus domestica HOM05D003347 ORTHO05D003821 2.1e-17 94.0 194 57.2
Thecc.01G142300 Theobroma cacao HOM05D003347 ORTHO05D003821 2.8e-17 93.6 154 69.5
Haze_25385 Corylus avellana HOM05D003347 ORTHO05D003821 8.1e-17 92.0 176 51.7
Lsat_1_v5_gn_1_80721 Lactuca sativa HOM05D002427 ORTHO05D002818 1.1e-16 91.7 122 63.1
TAR376G0009 Trochodendron aralioides HOM05D003347 ORTHO05D003821 1.4e-16 91.3 177 50.8
PGR102G0439 Punica granatum HOM05D003347 ORTHO05D003821 6.9e-16 89.0 118 58.5
Sc09g0002030 Simmondsia chinensis HOM05D003347 ORTHO05D003821 6.9e-16 89.0 97 70.1
Dinv34344 Davidia involucrata HOM05D003347 ORTHO05D003821 2.6e-15 87.0 123 61.8
QL10p039663 Quercus lobata HOM05D003347 ORTHO05D003821 4.5e-15 86.3 149 43.6
Dinv24283 Davidia involucrata HOM05D003347 ORTHO05D003821 5.8e-15 85.9 117 52.1
HanXRQChr01g0017031 Helianthus annuus HOM05D003347 ORTHO05D003821 1.3e-14 84.7 64 75.0
Dinv05136 Davidia involucrata HOM05D000040 ORTHO05D000267 2.2e-14 84.0 176 59.7
CSS0039803 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 2.9e-14 83.6 121 47.9
CSS0043936 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 2.9e-14 83.6 121 47.9
Sed0017913 Sechium edule HOM05D003347 ORTHO05D003821 4.9e-14 82.8 108 52.8
Gohir.A09G006400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.9e-13 80.9 154 62.3
AUR62042720 Chenopodium quinoa HOM05D003347 ORTHO05D003821 2.4e-13 80.5 111 46.8
TAR381G0729 Trochodendron aralioides HOM05D003347 ORTHO05D003821 2.4e-13 80.5 179 55.9
Gohir.D09G005500 Gossypium hirsutum HOM05D003347 ORTHO05D003821 3.2e-13 80.1 154 64.9
Gorai.006G007100 Gossypium raimondii HOM05D003347 ORTHO05D003821 3.2e-13 80.1 154 63.0
Nn5g28237 Nelumbo nucifera HOM05D003347 ORTHO05D003821 3.2e-13 80.1 100 56.0
unitig_60.g25508 Utricularia gibba HOM05D003347 ORTHO05D003821 4.2e-13 79.7 127 65.4
ATR0684G168 Amborella trichopoda HOM05D003347 ORTHO05D003821 5.4e-13 79.3 96 68.8
Aqoxy6G00189 Aquilegia oxysepala HOM05D003347 ORTHO05D003821 5.4e-13 79.3 100 62.0
Glyma.06G158900 Glycine max HOM05D003347 ORTHO05D003821 5.4e-13 79.3 171 50.3
PGSC0003DMG400023323 Solanum tuberosum HOM05D003347 ORTHO05D003821 5.4e-13 79.3 187 55.1
Actinidia26147 Actinidia chinensis HOM05D003347 ORTHO05D003821 9.3e-13 78.6 184 52.7
Nitab4.5_0013117g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 2.7e-12 77.0 151 62.9
Solyc05g056460.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 4.6e-12 76.3 117 57.3
CiPaw.03G114900 Carya illinoinensis HOM05D003347 ORTHO05D003821 6.0e-12 75.9 179 55.3
Oeu037839.1 Olea europaea HOM05D003347 ORTHO05D003821 6.0e-12 75.9 109 57.8
COL.COLO4_12116 Corchorus olitorius HOM05D012218 ORTHO05D003821 7.9e-12 75.5 180 51.7
TPR.G28695 Trifolium pratense HOM05D003347 ORTHO05D003821 1.3e-11 74.7 118 46.6
AUR62000566 Chenopodium quinoa HOM05D003347 ORTHO05D003821 2.3e-11 73.9 107 77.6
Aa31LG11G7390 Aethionema arabicum HOM05D012923 ORTHO05D014747 3.0e-11 73.6 125 57.6
Cfa002207 Carpinus fangiana HOM05D003347 ORTHO05D003821 3.0e-11 73.6 179 38.0
SGA_v2.0_scaffold1G00306 Striga asiatica HOM05D003347 ORTHO05D003821 3.9e-11 73.2 105 60.0
THA.LOC104823661 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 8.7e-11 72.0 105 58.1
Migut.H00863 Erythranthe guttata HOM05D003347 ORTHO05D003821 1.5e-10 71.2 174 56.9
Cfa005522 Carpinus fangiana HOM05D003347 ORTHO05D003821 1.9e-10 70.9 95 57.9
TWI14G1287 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 2.5e-10 70.5 109 44.0
AUR62014268 Chenopodium quinoa HOM05D003347 ORTHO05D003821 3.3e-10 70.1 103 44.7
Haze_01671 Corylus avellana HOM05D003347 ORTHO05D003821 3.3e-10 70.1 94 51.1
Atru.chr6.636 Acer truncatum HOM05D003347 ORTHO05D003821 4.3e-10 69.7 99 44.4
Psat5g058080 Pisum sativum HOM05D003347 ORTHO05D003821 4.3e-10 69.7 101 51.5
Cc02_g22510 Coffea canephora HOM05D003347 ORTHO05D003821 5.6e-10 69.3 152 61.2
TAR628G0882 Trochodendron aralioides HOM05D003347 ORTHO05D003821 9.6e-10 68.6 108 47.2
Gohir.D12G040600 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.3e-09 68.2 111 55.0
EL10Ac6g14071 Beta vulgaris HOM05D003347 ORTHO05D003821 1.6e-09 67.8 107 56.1
CANSAT11G2200 Cannabis sativa HOM05D003347 ORTHO05D003821 2.1e-09 67.4 108 58.3
Sc03g0004210 Simmondsia chinensis HOM05D003347 ORTHO05D003821 2.1e-09 67.4 106 45.3
Gohir.A04G127400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 3.6e-09 66.6 99 59.6
MD15G1423300 Malus domestica HOM05D003347 ORTHO05D003821 3.6e-09 66.6 98 48.0
HPP92_009365 Vanilla planifolia HOM05D003347 ORTHO05D003821 6.2e-09 65.9 105 45.7
CDE06G2684 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 8.1e-09 65.5 121 43.0
Gorai.012G161200 Gossypium raimondii HOM05D003347 ORTHO05D003821 8.1e-09 65.5 140 49.3
Medtr2g007150 Medicago truncatula HOM05D003347 ORTHO05D003821 1.1e-08 65.1 97 54.6
ECA248G0339 Erigeron canadensis HOM05D003347 ORTHO05D003821 1.4e-08 64.7 62 62.9
GSVIVG01022926001 Vitis vinifera HOM05D003347 ORTHO05D003821 1.4e-08 64.7 97 59.8
Hma1.2p1_0217F.1_g092040 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 2.4e-08 63.9 119 47.1
Manes.12G147600 Manihot esculenta HOM05D003347 ORTHO05D003821 2.4e-08 63.9 96 60.4
EL10Ac4g09689 Beta vulgaris HOM05D003347 ORTHO05D003821 4.0e-08 63.2 182 47.3
Gohir.D04G172100 Gossypium hirsutum HOM05D003347 ORTHO05D003821 4.0e-08 63.2 107 52.3
Duzib132G0710 Durio zibethinus HOM05D003347 ORTHO05D003821 6.9e-08 62.4 99 53.5
Phvul.006G214600 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 6.9e-08 62.4 101 52.5
arahy.Tifrunner.gnm1.ann1.CXB9HG Arachis hypogaea HOM05D003347 ORTHO05D003821 9.0e-08 62.0 99 59.6
TPR.G2109 Trifolium pratense HOM05D003347 ORTHO05D003821 9.0e-08 62.0 98 60.2
Phvul.009G151400 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 1.2e-07 61.6 88 50.0
Potri.019G001900 Populus trichocarpa HOM05D003347 ORTHO05D003821 1.2e-07 61.6 157 45.2
Zm00001eb113690 Zea mays HOM05D003347 ORTHO05D003821 1.2e-07 61.6 100 43.0
Zm00001eb197610 Zea mays HOM05D003347 ORTHO05D003821 1.2e-07 61.6 177 40.1
arahy.Tifrunner.gnm1.ann1.N22SFW Arachis hypogaea HOM05D003347 ORTHO05D003821 1.5e-07 61.2 99 59.6
Hma1.2p1_0930F.1_g238020 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 1.5e-07 61.2 91 45.1
PGR042G0677 Punica granatum HOM05D003347 ORTHO05D003821 1.5e-07 61.2 104 49.0
Lj6g0014149 Lotus japonicus HOM05D003347 ORTHO05D003821 2.6e-07 60.5 102 54.9
MBI03_g33029_MAGBIO Magnolia biondii HOM05D003347 ORTHO05D003821 2.6e-07 60.5 111 54.1
CDE06G2842 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 3.4e-07 60.1 109 44.0
MSTRG.23472 Avicennia marina HOM05D003347 ORTHO05D003821 4.5e-07 59.7 141 47.5
Lalb_Chr11g0068781 Lupinus albus HOM05D003347 ORTHO05D003821 5.8e-07 59.3 84 48.8
VMungo0540G0141 Vigna mungo HOM05D003347 ORTHO05D003821 5.8e-07 59.3 80 55.0
TWI59G0889 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 7.6e-07 58.9 95 43.2
HanXRQChr03g0071751 Helianthus annuus HOM05D003347 ORTHO05D003821 9.9e-07 58.5 100 42.0
Lsat_1_v5_gn_9_118960 Lactuca sativa HOM05D003347 ORTHO05D003821 1.3e-06 58.2 77 50.6
Sopen05g034850 Solanum pennellii HOM05D003347 ORTHO05D003821 1.7e-06 57.8 93 54.8
vmacro01761 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 1.7e-06 57.8 140 34.3
Oeu008894.1 Olea europaea HOM05D003347 ORTHO05D003821 2.2e-06 57.4 85 45.9
Oeu008895.1 Olea europaea HOM05D003347 ORTHO05D003821 2.2e-06 57.4 85 45.9
CARHR051920 Cardamine hirsuta HOM05D003347 ORTHO05D003821 2.9e-06 57.0 152 55.3
MELO3C023199.2 Cucumis melo HOM05D003347 ORTHO05D003821 2.9e-06 57.0 104 58.7
CiPaw.05G044400 Carya illinoinensis HOM05D003347 ORTHO05D003821 3.8e-06 56.6 177 42.9
Lj9C306T9 Lonicera japonica HOM05D003347 ORTHO05D003821 3.8e-06 56.6 71 50.7
MD08G1229400 Malus domestica HOM05D003347 ORTHO05D003821 3.8e-06 56.6 77 68.8
Potri.001G306100 Populus trichocarpa HOM05D003347 ORTHO05D003821 3.8e-06 56.6 82 57.3
Peaxi162Scf00011g00421 Petunia axillaris HOM05D003347 ORTHO05D003821 4.9e-06 56.2 82 46.3
Lj1g0014274 Lotus japonicus HOM05D003347 ORTHO05D003821 8.4e-06 55.5 92 44.6


User provided reference genes

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