Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G2535 Fragaria x ananassa HOM05D005419 ORTHO05D019206 5.5e-116 421.0 216 100.0
FAN09G2129 Fragaria x ananassa HOM05D005419 ORTHO05D019206 8.8e-114 413.7 216 99.1
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 5.4e-79 298.1 158 97.5
FAN20G2331 Fragaria x ananassa HOM05D005419 ORTHO05D007365 3.2e-63 245.7 224 61.6
FvH4_2g28610 Fragaria vesca HOM05D005419 ORTHO05D007365 9.2e-63 244.2 224 61.2
FAN24G2053 Fragaria x ananassa HOM05D005419 ORTHO05D007365 9.2e-63 244.2 224 61.2
FAN15G2739 Fragaria x ananassa HOM05D005419 ORTHO05D007365 2.7e-62 242.7 224 61.2
FAN27G2423 Fragaria x ananassa HOM05D005419 ORTHO05D007365 3.3e-60 235.7 224 59.4
RcHm_v2.0_Chr6g0297381 Rosa chinensis HOM05D005419 ORTHO05D007365 3.3e-60 235.7 224 58.9
Dinv18189 Davidia involucrata HOM05D005419 ORTHO05D007365 5.6e-60 235.0 187 66.3
MD15G1129200 Malus domestica HOM05D005419 ORTHO05D007365 3.1e-58 229.2 221 57.5
TWI34G1484 Tripterygium wilfordii HOM05D005419 ORTHO05D007365 7.5e-57 224.6 221 56.1
QL02p020871 Quercus lobata HOM05D005419 ORTHO05D007365 1.3e-56 223.8 220 56.4
MD08G1152600 Malus domestica HOM05D005419 ORTHO05D007365 1.7e-56 223.4 224 55.8
Prupe.1G484800 Prunus persica HOM05D005419 ORTHO05D007365 2.2e-56 223.0 224 55.4
TAR383G1021 Trochodendron aralioides HOM05D005419 ORTHO05D007365 1.1e-55 220.7 219 55.3
Manes.16G125000 Manihot esculenta HOM05D005419 ORTHO05D007365 1.4e-55 220.3 221 54.8
Ciclev10009082m.g Citrus clementina HOM05D005419 ORTHO05D007365 1.9e-55 219.9 221 55.2
PGR119G2552 Punica granatum HOM05D005419 ORTHO05D007365 2.4e-55 219.5 221 56.1
Dinv15871 Davidia involucrata HOM05D005419 ORTHO05D007365 4.1e-55 218.8 221 55.2
Atru.chr7.2482 Acer truncatum HOM05D005419 ORTHO05D007365 5.4e-55 218.4 219 54.3
Gorai.010G116600 Gossypium raimondii HOM05D005419 ORTHO05D007365 9.2e-55 217.6 224 56.2
Potri.018G023700 Populus trichocarpa HOM05D005419 ORTHO05D007365 9.2e-55 217.6 224 55.4
Glyma.14G113800 Glycine max HOM05D005419 ORTHO05D007365 1.2e-54 217.2 222 54.1
Cfa013117 Carpinus fangiana HOM05D005419 ORTHO05D007365 1.6e-54 216.9 221 54.3
Gohir.D06G101700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 1.6e-54 216.9 224 55.4
THA.LOC104805589 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 1.6e-54 216.9 221 55.7
VMungo0647G0032 Vigna mungo HOM05D005419 ORTHO05D007365 1.6e-54 216.9 222 55.0
Gohir.A06G099500 Gossypium hirsutum HOM05D005419 ORTHO05D007365 2.1e-54 216.5 224 55.8
Rhsim12G0212900 Rhododendron simsii HOM05D005419 ORTHO05D007365 2.1e-54 216.5 226 54.0
GSVIVG01035939001 Vitis vinifera HOM05D005419 ORTHO05D007365 2.1e-54 216.5 221 54.8
Rhsim07G0160700 Rhododendron simsii HOM05D005419 ORTHO05D007365 3.5e-54 215.7 209 55.5
Haze_21481 Corylus avellana HOM05D005419 ORTHO05D007365 4.6e-54 215.3 219 53.9
Gohir.D05G058700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 6.0e-54 214.9 221 54.8
Gorai.009G059800 Gossypium raimondii HOM05D005419 ORTHO05D007365 6.0e-54 214.9 221 54.8
Hma1.2p1_0974F.1_g243070 Hydrangea macrophylla HOM05D005419 ORTHO05D007365 6.0e-54 214.9 221 53.8
Sabra18G0026400 Salix brachista HOM05D005419 ORTHO05D007365 6.0e-54 214.9 223 55.2
Duzib150G0083 Durio zibethinus HOM05D005419 ORTHO05D007365 7.8e-54 214.5 221 55.7
BcaB06g28051 Brassica carinata HOM05D005419 ORTHO05D007365 1.0e-53 214.2 221 52.5
CiPaw.07G226000 Carya illinoinensis HOM05D005419 ORTHO05D007365 1.0e-53 214.2 221 54.3
Duzib168G1909 Durio zibethinus HOM05D005419 ORTHO05D007365 1.3e-53 213.8 221 54.3
Phvul.001G049700 Phaseolus vulgaris HOM05D005419 ORTHO05D007365 1.3e-53 213.8 222 53.6
CSS0019044 Camellia sinensis var. sinensis HOM05D005419 ORTHO05D007365 2.3e-53 213.0 221 54.3
Lj5g0012746 Lotus japonicus HOM05D005419 ORTHO05D007365 2.3e-53 213.0 222 52.7
Lalb_Chr23g0268401 Lupinus albus HOM05D005419 ORTHO05D007365 2.3e-53 213.0 222 53.6
AUR62031558 Chenopodium quinoa HOM05D005419 ORTHO05D007365 3.0e-53 212.6 219 53.9
ClCG08G013470 Citrullus lanatus HOM05D005419 ORTHO05D007365 3.0e-53 212.6 225 52.4
Cc08_g00340 Coffea canephora HOM05D005419 ORTHO05D007365 3.9e-53 212.2 221 53.4
Psat6g028000 Pisum sativum HOM05D005419 ORTHO05D007365 5.1e-53 211.8 219 53.4
AUR62012434 Chenopodium quinoa HOM05D005419 ORTHO05D007365 6.6e-53 211.5 218 54.1
Medtr1g012830 Medicago truncatula HOM05D005419 ORTHO05D007365 6.6e-53 211.5 219 52.5
Nn2g12192 Nelumbo nucifera HOM05D005419 ORTHO05D007365 6.6e-53 211.5 221 53.4
Potri.006G258200 Populus trichocarpa HOM05D005419 ORTHO05D007365 6.6e-53 211.5 224 54.5
EL10Ac2g04167 Beta vulgaris HOM05D005419 ORTHO05D007365 8.6e-53 211.1 221 52.5
Ca_13036_v3 Cicer arietinum L. HOM05D005419 ORTHO05D007365 1.1e-52 210.7 222 51.4
PSO210G4598 Papaver somniferum HOM05D005419 ORTHO05D007365 1.1e-52 210.7 225 52.9
TPR.G14021 Trifolium pratense HOM05D005419 ORTHO05D007365 1.9e-52 209.9 219 52.5
vmacro05161 Vaccinium macrocarpon HOM05D005419 ORTHO05D007365 1.9e-52 209.9 222 52.7
ATR0767G069 Amborella trichopoda HOM05D005419 ORTHO05D007365 2.5e-52 209.5 219 53.0
C04p55260 Brassica napus HOM05D005419 ORTHO05D007365 2.5e-52 209.5 221 51.1
BolC4t27063H Brassica oleracea HOM05D005419 ORTHO05D007365 2.5e-52 209.5 221 51.1
Cpa.g.sc187.13 Carica papaya HOM05D005419 ORTHO05D007365 2.5e-52 209.5 219 53.4
BcaC02g08359 Brassica carinata HOM05D005419 ORTHO05D007365 3.3e-52 209.1 221 51.1
A04p19650 Brassica napus HOM05D005419 ORTHO05D007365 4.3e-52 208.8 221 51.1
BraA04t17556Z Brassica rapa HOM05D005419 ORTHO05D007365 4.3e-52 208.8 221 51.1
CANSAT25G3306 Cannabis sativa HOM05D005419 ORTHO05D007365 5.6e-52 208.4 221 52.5
Nitab4.5_0007718g0040 Nicotiana tabacum HOM05D005419 ORTHO05D007365 5.6e-52 208.4 221 53.4
Peaxi162Scf00935g00015 Petunia axillaris HOM05D005419 ORTHO05D007365 5.6e-52 208.4 221 52.9
MELO3C011274.2 Cucumis melo HOM05D005419 ORTHO05D007365 7.3e-52 208.0 221 52.0
Eucgr.K02838 Eucalyptus grandis HOM05D005419 ORTHO05D007365 7.3e-52 208.0 221 52.0
Nitab4.5_0014723g0010 Nicotiana tabacum HOM05D005419 ORTHO05D007365 7.3e-52 208.0 221 53.4
Sed0010362 Sechium edule HOM05D005419 ORTHO05D007365 7.3e-52 208.0 221 52.0
Thecc.09G020800 Theobroma cacao HOM05D005419 ORTHO05D007365 7.3e-52 208.0 223 52.9
SalBow4G1212 Salvia bowleyana HOM05D005419 ORTHO05D007365 9.5e-52 207.6 224 52.2
SGA_v2.0_scaffold20G09092 Striga asiatica HOM05D005419 ORTHO05D007365 9.5e-52 207.6 221 53.4
Aa31sc229G10 Aethionema arabicum HOM05D005419 ORTHO05D007365 1.6e-51 206.8 221 50.2
FAN01G2683 Fragaria x ananassa HOM05D005419 ORTHO05D019206 1.6e-51 206.8 109 94.5
THA.LOC104815027 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 1.6e-51 206.8 216 53.7
Aqoxy7G03594 Aquilegia oxysepala HOM05D005419 ORTHO05D007365 2.1e-51 206.5 221 52.0
CsaV3_2G032220 Cucumis sativus L. HOM05D005419 ORTHO05D007365 2.1e-51 206.5 221 52.0
arahy.Tifrunner.gnm1.ann1.2DG9CD Arachis hypogaea HOM05D005419 ORTHO05D007365 2.8e-51 206.1 219 53.0
arahy.Tifrunner.gnm1.ann1.X3TF0E Arachis hypogaea HOM05D005419 ORTHO05D007365 2.8e-51 206.1 219 53.0
Sp4g04430 Schrenkiella parvula HOM05D005419 ORTHO05D007365 2.8e-51 206.1 221 50.2
Migut.A00016 Erythranthe guttata HOM05D005419 ORTHO05D007365 4.7e-51 205.3 221 52.5
Carub.0004s0490 Capsella rubella HOM05D005419 ORTHO05D007365 8.1e-51 204.5 219 50.7
Thhalv10000272m.g Eutrema salsugineum HOM05D005419 ORTHO05D007365 8.1e-51 204.5 221 50.2
FAN02G2313 Fragaria x ananassa HOM05D005419 ORTHO05D019206 8.1e-51 204.5 100 99.0
AL4G16610 Arabidopsis lyrata HOM05D005419 ORTHO05D007365 1.4e-50 203.8 221 50.2
DCAR_003104 Daucus carota HOM05D005419 ORTHO05D007365 1.4e-50 203.8 221 51.6
ECA248G3461 Erigeron canadensis HOM05D005419 ORTHO05D007365 1.4e-50 203.8 222 50.5
Os08g0299000 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D007365 1.8e-50 203.4 219 50.7
A09p55730 Brassica napus HOM05D005419 ORTHO05D007365 2.3e-50 203.0 224 49.1
BraA09t40974Z Brassica rapa HOM05D005419 ORTHO05D007365 2.3e-50 203.0 224 49.1
AT2G25280 Arabidopsis thaliana HOM05D005419 ORTHO05D007365 3.1e-50 202.6 221 49.8
Lsat_1_v5_gn_5_157921 Lactuca sativa HOM05D005419 ORTHO05D007365 4.0e-50 202.2 220 50.9
Sopen08g010000 Solanum pennellii HOM05D005419 ORTHO05D007365 4.0e-50 202.2 221 51.6
Actinidia14096 Actinidia chinensis HOM05D005419 ORTHO05D007365 5.2e-50 201.8 209 52.6
BcaB08g35172 Brassica carinata HOM05D005419 ORTHO05D007365 5.2e-50 201.8 221 49.8
MSTRG.26021 Avicennia marina HOM05D005419 ORTHO05D007365 6.8e-50 201.4 218 52.3
Sc09g0010330 Simmondsia chinensis HOM05D005419 ORTHO05D007365 8.9e-50 201.1 216 52.3
Solyc08g029110.3 Solanum lycopersicum HOM05D005419 ORTHO05D007365 8.9e-50 201.1 221 51.1
C08p38730 Brassica napus HOM05D005419 ORTHO05D007365 1.2e-49 200.7 224 48.7
BolC8t51443H Brassica oleracea HOM05D005419 ORTHO05D007365 1.2e-49 200.7 224 48.7
MBI15_g25765_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 1.2e-49 200.7 219 50.7
HanXRQChr13g0387991 Helianthus annuus HOM05D005419 ORTHO05D007365 2.0e-49 199.9 222 49.5
Lj8A726G39 Lonicera japonica HOM05D005419 ORTHO05D007365 2.6e-49 199.5 219 52.1
Zm00001eb362830 Zea mays HOM05D005419 ORTHO05D007365 4.4e-49 198.7 218 50.5
BcaC07g40875 Brassica carinata HOM05D005419 ORTHO05D007365 5.8e-49 198.4 219 48.9
CANSAT54G2335 Cannabis sativa HOM05D005419 ORTHO05D007365 9.9e-49 197.6 221 49.3
SEGI_02513 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 1.7e-48 196.8 221 50.2
FAN21G3387 Fragaria x ananassa HOM05D005419 ORTHO05D019206 2.9e-48 196.1 97 97.9
CDE03G0272 Ceratophyllum demersum HOM05D005419 ORTHO05D007365 3.8e-48 195.7 220 50.9
unitig_32.g10881 Utricularia gibba HOM05D005419 ORTHO05D007365 1.9e-47 193.4 219 49.3
HPP92_000481 Vanilla planifolia HOM05D005419 ORTHO05D007365 2.4e-47 193.0 221 48.0
MBI15_g36826_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 1.0e-45 187.6 213 50.2
Hund04483 Selenicereus undatus HOM05D005419 ORTHO05D007365 1.5e-44 183.7 257 42.0
Pp3c2_14390 Physcomitrium patens HOM05D005419 ORTHO05D007365 3.3e-44 182.6 214 46.3
CARHR116260 Cardamine hirsuta HOM05D005419 ORTHO05D007365 4.3e-44 182.2 223 45.3
Pp3c14_17280 Physcomitrium patens HOM05D005419 ORTHO05D007365 4.3e-44 182.2 214 45.8
Mapoly0065s0048 Marchantia polymorpha HOM05D005419 ORTHO05D007365 1.2e-43 180.6 220 45.0
Sed0006243 Sechium edule HOM05D005419 ORTHO05D007365 2.1e-43 179.9 218 45.0
SMO358G0334 Selaginella moellendorffii HOM05D005419 ORTHO05D007365 1.4e-42 177.2 225 44.0
SEGI_34683 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 5.2e-42 175.3 221 44.3
CAN.G75.9 Capsicum annuum HOM05D005419 ORTHO05D007365 8.9e-42 174.5 100 83.0
Sabra06G0201900 Salix brachista HOM05D005419 ORTHO05D007365 8.9e-42 174.5 116 75.9
Oeu012280.1 Olea europaea HOM05D005419 ORTHO05D007365 2.6e-41 172.9 100 83.0
THA.LOC104815144 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 1.7e-40 170.2 95 84.2
CBR_g59364 Chara braunii HOM05D005419 ORTHO05D007365 8.1e-35 151.4 214 39.3
COL.COLO4_18897 Corchorus olitorius HOM05D005419 ORTHO05D007365 4.0e-34 149.1 180 47.8
Os05g0310750 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D019206 5.4e-31 138.7 76 85.5
PRCOL_00000176 Prasinoderma coloniale HOM05D005419 ORTHO05D007365 2.3e-29 133.3 217 36.9
FAN16G2296 Fragaria x ananassa HOM05D005419 ORTHO05D019206 1.9e-28 130.2 97 73.2
Cre02.g096200 Chlamydomonas reinhardtii HOM05D005419 ORTHO05D007365 4.0e-26 122.5 214 34.6
MCO07G667 Micromonas commoda HOM05D005419 ORTHO05D007365 5.1e-21 105.5 229 32.8
Haze_26290 Corylus avellana HOM05D005419 ORTHO05D007365 4.3e-20 102.4 224 29.9
Lalb_Chr11g0063641 Lupinus albus HOM05D005419 ORTHO05D007365 1.3e-11 74.3 40 85.0
Prupe.1G567700 Prunus persica HOM05D005419 ORTHO05D019206 1.4e-10 70.9 40 87.5
Oeu012278.1 Olea europaea HOM05D005419 ORTHO05D007365 9.0e-10 68.2 35 82.9
Cfa026845 Carpinus fangiana HOM05D005419 ORTHO05D007365 4.5e-09 65.9 200 29.0
AagrBONN_evm.TU.Sc2ySwM_368.1912 Anthoceros agrestis HOM05D005419 ORTHO05D007365 2.2e-08 63.5 35 77.1
FAN09G3939 Fragaria x ananassa HOM05D006854 ORTHO05D209404 1.9e-07 60.5 51 80.4


User provided reference genes

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