Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G2407 Fragaria x ananassa HOM05D004917 ORTHO05D005954 4.1e-187 657.9 329 100.0
FAN19G2004 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.8e-111 406.0 311 73.0
FvH4_1g18251 Fragaria vesca HOM05D004917 ORTHO05D005954 1.7e-105 386.7 191 99.0
FvH4_1g18250 Fragaria vesca HOM05D004917 ORTHO05D005954 5.3e-94 348.6 232 77.2
Prupe.6G216800 Prunus persica HOM05D004917 ORTHO05D005954 9.0e-94 347.8 222 78.8
RcHm_v2.0_Chr2g0108761 Rosa chinensis HOM05D004917 ORTHO05D005954 3.4e-93 345.9 228 77.2
FAN23G1748 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.7e-92 343.6 225 75.6
FvH4_1g18230 Fragaria vesca HOM05D004917 ORTHO05D005954 9.3e-91 337.8 225 74.2
FAN19G0182 Fragaria x ananassa HOM05D004917 ORTHO05D005954 9.3e-91 337.8 225 74.2
FAN26G0787 Fragaria x ananassa HOM05D004917 ORTHO05D005954 4.6e-90 335.5 224 76.3
RcHm_v2.0_Chr2g0108751 Rosa chinensis HOM05D004917 ORTHO05D005954 2.5e-88 329.7 215 75.8
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 2.8e-87 326.2 223 73.5
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 1.5e-85 320.5 231 71.0
Lj4g0024725 Lotus japonicus HOM05D004917 ORTHO05D005954 4.5e-85 318.9 228 69.7
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 7.6e-85 318.2 195 83.1
Duzib147G0189 Durio zibethinus HOM05D004917 ORTHO05D005954 4.9e-84 315.5 247 66.0
PSO017G2968 Papaver somniferum HOM05D004917 ORTHO05D005954 4.9e-84 315.5 224 71.0
Atru.chr3.1060 Acer truncatum HOM05D004917 ORTHO05D005954 8.4e-84 314.7 189 80.4
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 1.4e-83 313.9 208 74.0
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 2.5e-83 313.2 226 71.7
Sabra14G0006700 Salix brachista HOM05D004917 ORTHO05D005954 5.5e-83 312.0 213 73.2
TAR628G1580 Trochodendron aralioides HOM05D004917 ORTHO05D005954 9.3e-83 311.2 218 72.0
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 2.1e-82 310.1 246 67.1
Ciclev10026314m.g Citrus clementina HOM05D004917 ORTHO05D005954 2.7e-82 309.7 225 70.2
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 2.7e-82 309.7 228 67.1
Actinidia16409 Actinidia chinensis HOM05D004917 ORTHO05D005954 3.5e-82 309.3 235 67.2
Cc07_g07360 Coffea canephora HOM05D004917 ORTHO05D005954 4.6e-82 308.9 215 71.6
Hma1.2p1_0424F.1_g150480 Hydrangea macrophylla HOM05D004917 ORTHO05D005954 4.6e-82 308.9 216 70.4
Potri.014G012100 Populus trichocarpa HOM05D004917 ORTHO05D005954 4.6e-82 308.9 228 70.2
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 6.0e-82 308.5 220 70.0
Sed0017274 Sechium edule HOM05D004917 ORTHO05D005954 1.3e-81 307.4 232 69.0
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 2.3e-81 306.6 196 74.5
VMungo0251G1412 Vigna mungo HOM05D004917 ORTHO05D005954 2.3e-81 306.6 202 73.8
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 3.0e-81 306.2 196 75.5
PSO170G3850 Papaver somniferum HOM05D004917 ORTHO05D005954 3.9e-81 305.8 228 68.9
Thecc.01G076400 Theobroma cacao HOM05D004917 ORTHO05D005954 3.9e-81 305.8 224 69.2
Manes.13G109000 Manihot esculenta HOM05D004917 ORTHO05D005954 8.7e-81 304.7 235 66.4
Medtr4g097500 Medicago truncatula HOM05D004917 ORTHO05D005954 8.7e-81 304.7 223 67.3
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 1.1e-80 304.3 197 75.1
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 1.9e-80 303.5 196 75.0
Sc07g0000430 Simmondsia chinensis HOM05D004917 ORTHO05D005954 2.5e-80 303.1 244 62.7
GSVIVG01004399001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.5e-80 303.1 213 69.0
TWI74G1062 Tripterygium wilfordii HOM05D004917 ORTHO05D005954 3.3e-80 302.8 217 69.1
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 4.3e-80 302.4 197 73.1
Glyma.17G158500 Glycine max HOM05D004917 ORTHO05D005954 5.7e-80 302.0 243 64.2
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 7.4e-80 301.6 230 67.8
Cpa.g.sc673.2 Carica papaya HOM05D004917 ORTHO05D005954 9.7e-80 301.2 233 67.8
Ca_22095_v3 Cicer arietinum L. HOM05D004917 ORTHO05D005954 9.7e-80 301.2 219 68.9
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 9.7e-80 301.2 189 75.7
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.3e-79 300.8 196 74.0
HanXRQChr09g0262071 Helianthus annuus HOM05D004917 ORTHO05D005954 1.3e-79 300.8 204 70.6
Phvul.003G232900 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 2.8e-79 299.7 182 77.5
GSVIVG01007444001 Vitis vinifera HOM05D004917 ORTHO05D005954 3.7e-79 299.3 236 65.7
arahy.Tifrunner.gnm1.ann1.1K25L2 Arachis hypogaea HOM05D004917 ORTHO05D005954 4.8e-79 298.9 245 63.7
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 8.2e-79 298.1 207 70.0
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 8.2e-79 298.1 236 66.1
Lsat_1_v5_gn_4_160020 Lactuca sativa HOM05D004917 ORTHO05D005954 1.4e-78 297.4 239 65.3
COL.COLO4_11615 Corchorus olitorius HOM05D004917 ORTHO05D005954 1.8e-78 297.0 202 71.8
CiPaw.01G001900 Carya illinoinensis HOM05D004917 ORTHO05D005954 3.1e-78 296.2 198 72.7
Phvul.003G232800 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 3.1e-78 296.2 183 78.1
arahy.Tifrunner.gnm1.ann1.UB5R5Q Arachis hypogaea HOM05D004917 ORTHO05D005954 5.3e-78 295.4 216 69.4
FAN26G1896 Fragaria x ananassa HOM05D004917 ORTHO05D005954 5.3e-78 295.4 225 67.1
PGSC0003DMG400003322 Solanum tuberosum HOM05D004917 ORTHO05D005954 6.9e-78 295.0 220 67.7
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 2.6e-77 293.1 189 76.7
Nn5g30667 Nelumbo nucifera HOM05D004917 ORTHO05D005954 3.4e-77 292.7 205 72.7
Glyma.17G158400 Glycine max HOM05D004917 ORTHO05D005954 5.9e-77 292.0 225 64.9
Sopen02g014680 Solanum pennellii HOM05D004917 ORTHO05D005954 5.9e-77 292.0 189 73.5
ECA232G4556 Erigeron canadensis HOM05D004917 ORTHO05D005954 1.7e-76 290.4 241 62.7
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 2.2e-76 290.0 213 67.6
CsaV3_2G016370 Cucumis sativus L. HOM05D004917 ORTHO05D005954 3.8e-76 289.3 185 74.6
CAN.G775.1 Capsicum annuum HOM05D004917 ORTHO05D005954 8.5e-76 288.1 238 63.0
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 1.9e-75 287.0 227 63.9
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 1.9e-75 287.0 229 62.4
Gorai.008G085700 Gossypium raimondii HOM05D004917 ORTHO05D005954 1.9e-75 287.0 189 72.0
Os03g0729200 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 1.9e-75 287.0 191 70.7
Zm00001eb215580 Zea mays HOM05D004917 ORTHO05D005954 4.2e-75 285.8 180 75.0
Migut.L00432 Erythranthe guttata HOM05D004917 ORTHO05D005954 5.5e-75 285.4 196 69.4
Gohir.D12G076900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 5.5e-75 285.4 189 71.4
PSO170G4503 Papaver somniferum HOM05D004917 ORTHO05D005954 5.5e-75 285.4 190 72.6
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 7.2e-75 285.0 199 66.8
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 1.2e-74 284.3 202 68.8
AUR62007540 Chenopodium quinoa HOM05D004917 ORTHO05D005954 1.6e-74 283.9 185 73.0
DCAR_014953 Daucus carota HOM05D004917 ORTHO05D005954 1.6e-74 283.9 229 64.6
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 2.1e-74 283.5 189 69.8
SGA_v2.0_scaffold79G25603 Striga asiatica HOM05D004917 ORTHO05D005954 2.1e-74 283.5 201 70.1
Lalb_Chr11g0075991 Lupinus albus HOM05D004917 ORTHO05D005954 2.7e-74 283.1 206 69.4
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 2.7e-74 283.1 204 65.7
PSO017G4293 Papaver somniferum HOM05D004917 ORTHO05D005954 3.6e-74 282.7 197 69.0
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 7.9e-74 281.6 228 59.6
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 1.4e-73 280.8 218 62.4
AUR62004032 Chenopodium quinoa HOM05D004917 ORTHO05D005954 1.8e-73 280.4 186 71.0
VMungo0251G2665 Vigna mungo HOM05D004917 ORTHO05D005954 2.3e-73 280.0 182 74.2
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 5.1e-73 278.9 189 67.7
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 6.7e-73 278.5 247 58.7
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 8.8e-73 278.1 247 58.7
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 2.5e-72 276.6 235 60.0
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 2.5e-72 276.6 180 73.9
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 2.5e-72 276.6 228 60.5
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 5.7e-72 275.4 248 57.7
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 5.7e-72 275.4 248 57.7
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 7.4e-72 275.0 238 58.0
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 7.4e-72 275.0 238 58.4
ClCG02G012210 Citrullus lanatus HOM05D004917 ORTHO05D005954 1.7e-71 273.9 250 61.2
Lj4A165T49 Lonicera japonica HOM05D004917 ORTHO05D005954 6.3e-71 271.9 232 61.6
Migut.L00430 Erythranthe guttata HOM05D004917 ORTHO05D005954 1.4e-70 270.8 185 71.4
THA.LOC104827747 Tarenaya hassleriana HOM05D004917 ORTHO05D005954 4.1e-70 269.2 202 64.4
Dinv26959 Davidia involucrata HOM05D004917 ORTHO05D005954 3.8e-68 262.7 166 77.1
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 6.5e-68 261.9 197 66.5
GSVIVG01007168001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.9e-67 260.4 152 80.3
MELO3C020846.2 Cucumis melo HOM05D004917 ORTHO05D005954 1.6e-66 257.3 251 56.6
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 3.6e-66 256.1 186 65.1
CSS0005558 Camellia sinensis var. sinensis HOM05D004917 ORTHO05D005954 4.7e-66 255.8 229 61.1
Oeu013341.1 Olea europaea HOM05D004917 ORTHO05D005954 6.7e-65 251.9 154 77.9
DCAR_000455 Daucus carota HOM05D004917 ORTHO05D005954 1.5e-64 250.8 159 73.0
Nitab4.5_0000036g0150 Nicotiana tabacum HOM05D004917 ORTHO05D005954 1.3e-63 247.7 153 75.2
CDE02G4371 Ceratophyllum demersum HOM05D004917 ORTHO05D005954 1.2e-61 241.1 240 53.3
Peaxi162Scf00449g00417 Petunia axillaris HOM05D004917 ORTHO05D005954 5.5e-59 232.3 241 56.0
FAN23G2689 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.2e-58 231.1 153 81.7
Hund16417 Selenicereus undatus HOM05D004917 ORTHO05D005954 9.7e-56 221.5 146 74.0
MBI16_g06077_MAGBIO Magnolia biondii HOM05D004917 ORTHO05D005954 1.2e-53 214.5 191 58.6
Nitab4.5_0007379g0030 Nicotiana tabacum HOM05D004917 ORTHO05D005954 7.7e-53 211.8 241 50.6
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 3.2e-51 206.5 218 45.4
unitig_37.g11996 Utricularia gibba HOM05D004917 ORTHO05D005954 4.7e-50 202.6 209 54.5
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 1.7e-47 194.1 180 48.9
Zm00001eb056030 Zea mays HOM05D004917 ORTHO05D005954 1.0e-44 184.9 130 66.2
FAN26G2723 Fragaria x ananassa HOM05D004917 ORTHO05D005954 5.2e-41 172.6 191 53.4
QL06p038908 Quercus lobata HOM05D004917 ORTHO05D005954 1.3e-36 157.9 95 78.9
ATR0739G160 Amborella trichopoda HOM05D004917 ORTHO05D005954 5.5e-35 152.5 100 71.0
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 1.6e-34 151.0 99 71.7
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 1.6e-34 151.0 90 77.8
GSVIVG01004400001 Vitis vinifera HOM05D004917 ORTHO05D005954 8.0e-34 148.7 96 72.9
GSVIVG01007167001 Vitis vinifera HOM05D004917 ORTHO05D005954 8.0e-34 148.7 137 59.9
FAN28G0406 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.9e-22 110.9 95 60.0
MCO14G127 Micromonas commoda HOM05D004917 ORTHO05D005954 3.2e-22 110.2 163 36.8
Potri.007G007201 Populus trichocarpa HOM05D004917 ORTHO05D005954 5.6e-19 99.4 69 72.5
Atru.chr8.2534 Acer truncatum HOM05D007024 ORTHO05D008865 9.5e-19 98.6 227 32.2
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 6.2e-18 95.9 217 30.4
Sabra07G0005500 Salix brachista HOM05D004917 ORTHO05D005954 4.4e-16 89.7 104 53.8
PRCOL_00004664 Prasinoderma coloniale HOM05D004917 ORTHO05D005954 7.5e-16 89.0 133 39.8
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 9.8e-16 88.6 174 32.8
Zm00001eb030360 Zea mays HOM05D004917 ORTHO05D005954 9.8e-16 88.6 89 55.1
arahy.Tifrunner.gnm1.ann1.F27BB1 Arachis hypogaea HOM05D004917 ORTHO05D005954 4.9e-15 86.3 53 75.5
MCO06G061 Micromonas commoda HOM05D004917 ORTHO05D005954 1.6e-13 81.3 134 38.1
ATR0739G073 Amborella trichopoda HOM05D004917 ORTHO05D005954 7.8e-13 79.0 77 53.2
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 3.9e-12 76.6 108 38.0
Cre06.g278096 Chlamydomonas reinhardtii HOM05D004917 ORTHO05D005954 6.6e-12 75.9 124 36.3
Cre17.g697050 Chlamydomonas reinhardtii HOM05D004917 ORTHO05D005954 1.2e-10 71.6 239 25.5
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 1.1e-09 68.6 110 34.5
Gohir.A12G080465 Gossypium hirsutum HOM05D004917 ORTHO05D005954 2.3e-09 67.4 50 66.0
MCO07G374 Micromonas commoda HOM05D004917 ORTHO05D005954 3.1e-09 67.0 84 40.5
Haze_02356 Corylus avellana HOM05D004917 ORTHO05D005954 5.8e-08 62.8 37 75.7


User provided reference genes

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