Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 8.9e-142 506.9 254 100.0
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 7.6e-141 503.8 254 99.2
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 2.6e-133 478.8 241 98.8
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 2.6e-133 478.8 241 98.8
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.6e-133 478.8 241 98.8
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 1.7e-132 476.1 241 97.9
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 1.7e-132 476.1 241 97.9
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.3e-129 466.5 235 99.6
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.9e-128 462.6 350 72.0
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 4.8e-127 458.0 241 93.8
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 1.5e-125 453.0 240 93.3
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 5.8e-125 451.1 241 92.9
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 7.6e-125 450.7 241 92.9
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 7.6e-125 450.7 241 92.9
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 1.3e-124 449.9 241 91.7
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 1.3e-124 449.9 241 91.7
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 2.2e-124 449.1 241 91.7
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 2.2e-124 449.1 241 92.5
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 6.4e-124 447.6 240 91.7
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 1.4e-123 446.4 241 90.9
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 1.9e-123 446.0 241 91.3
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 4.2e-123 444.9 241 90.9
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 7.1e-123 444.1 241 90.0
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 7.1e-123 444.1 241 90.9
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 9.3e-123 443.7 241 90.9
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 1.2e-122 443.4 241 90.9
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 2.7e-122 442.2 241 90.0
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 3.5e-122 441.8 241 89.6
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 3.5e-122 441.8 240 90.8
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 4.6e-122 441.4 241 90.5
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 4.6e-122 441.4 241 90.0
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 7.9e-122 440.7 241 90.5
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 7.9e-122 440.7 241 90.5
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 7.9e-122 440.7 241 90.5
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 7.9e-122 440.7 241 89.6
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 7.9e-122 440.7 241 89.6
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 7.9e-122 440.7 241 89.6
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 1.0e-121 440.3 240 90.4
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 1.0e-121 440.3 241 89.2
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 1.3e-121 439.9 241 90.0
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 1.8e-121 439.5 241 89.2
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 1.8e-121 439.5 241 90.0
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 1.8e-121 439.5 241 90.0
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 1.8e-121 439.5 241 90.0
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 3.0e-121 438.7 241 89.2
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 3.0e-121 438.7 241 89.6
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 3.9e-121 438.3 241 89.6
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 5.1e-121 438.0 241 89.6
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 5.1e-121 438.0 241 89.2
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 5.1e-121 438.0 241 89.6
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 5.1e-121 438.0 241 88.4
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 6.7e-121 437.6 241 89.6
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 8.7e-121 437.2 241 88.8
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 1.1e-120 436.8 241 89.2
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 3.3e-120 435.3 241 88.4
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 3.3e-120 435.3 240 89.6
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 3.3e-120 435.3 241 89.2
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 4.3e-120 434.9 241 88.8
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 4.3e-120 434.9 241 88.8
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 4.3e-120 434.9 241 87.6
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 4.3e-120 434.9 245 87.3
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 9.6e-120 433.7 238 89.5
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 1.3e-119 433.3 241 89.2
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 1.6e-119 433.0 241 88.8
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 2.8e-119 432.2 234 91.5
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 2.8e-119 432.2 241 88.0
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 8.1e-119 430.6 240 88.8
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 1.1e-118 430.3 241 87.6
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 1.1e-118 430.3 241 87.6
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 1.4e-118 429.9 241 86.7
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 1.4e-118 429.9 241 87.6
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 1.8e-118 429.5 241 86.7
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.8e-118 429.5 241 87.1
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 1.8e-118 429.5 241 87.1
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 5.3e-118 427.9 241 86.3
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 5.3e-118 427.9 241 86.3
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 5.3e-118 427.9 241 86.7
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 6.9e-118 427.6 241 86.7
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 6.9e-118 427.6 241 87.1
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 9.0e-118 427.2 241 86.3
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 9.0e-118 427.2 241 86.3
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 1.2e-117 426.8 241 86.7
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 1.2e-117 426.8 241 86.7
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 1.5e-117 426.4 241 86.7
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 2.0e-117 426.0 249 85.5
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 2.0e-117 426.0 241 86.7
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 2.0e-117 426.0 241 86.7
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 3.4e-117 425.2 241 86.7
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 4.5e-117 424.9 241 87.1
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 7.6e-117 424.1 241 86.3
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 1.0e-116 423.7 241 86.3
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 1.0e-116 423.7 241 86.7
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 1.3e-116 423.3 241 87.1
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 2.2e-116 422.5 241 85.5
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 2.9e-116 422.2 241 84.2
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 2.9e-116 422.2 265 81.1
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 6.5e-116 421.0 241 83.8
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 6.5e-116 421.0 244 85.7
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 6.5e-116 421.0 241 83.8
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 1.1e-115 420.2 241 85.5
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 2.5e-115 419.1 241 86.7
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 4.2e-115 418.3 241 84.2
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 1.6e-114 416.4 241 82.6
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 1.6e-114 416.4 241 84.6
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 2.1e-114 416.0 241 84.6
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 2.7e-114 415.6 241 84.6
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 3.5e-114 415.2 241 84.2
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 4.6e-114 414.8 241 85.5
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 6.0e-114 414.5 241 84.2
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 7.9e-114 414.1 241 85.1
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 1.3e-113 413.3 240 86.2
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 1.8e-113 412.9 241 84.2
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 5.1e-113 411.4 241 84.6
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 6.7e-113 411.0 240 84.2
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 6.7e-113 411.0 240 84.2
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 8.7e-113 410.6 241 83.8
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 8.7e-113 410.6 241 83.8
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 1.1e-112 410.2 241 84.2
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 1.5e-112 409.8 241 80.5
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 1.5e-112 409.8 241 83.4
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 5.7e-112 407.9 239 84.1
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 5.7e-112 407.9 240 83.8
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 5.7e-112 407.9 239 84.1
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 5.7e-112 407.9 241 80.9
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 4.8e-111 404.8 241 83.4
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 4.8e-111 404.8 241 83.4
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 9.0e-110 400.6 241 82.2
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 9.0e-110 400.6 241 83.0
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 1.0e-108 397.1 241 80.5
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 1.7e-108 396.4 241 80.9
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 3.8e-108 395.2 241 81.3
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 8.4e-108 394.0 241 81.7
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 1.1e-107 393.7 222 87.4
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.5e-104 383.3 190 99.5
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 7.4e-104 380.9 256 76.2
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 1.3e-103 380.2 241 74.7
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 4.8e-103 378.3 240 78.8
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 6.3e-103 377.9 248 77.4
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 2.0e-101 372.9 241 75.5
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 4.5e-101 371.7 241 76.8
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 5.9e-101 371.3 241 78.4
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 5.0e-100 368.2 241 76.3
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 5.0e-100 368.2 241 76.3
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.6e-98 363.2 241 77.2
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 4.6e-98 361.7 246 73.6
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 6.1e-98 361.3 200 88.5
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 5.7e-96 354.8 193 88.6
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 2.8e-95 352.4 241 75.5
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 6.3e-95 351.3 271 71.2
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 1.2e-93 347.1 291 67.0
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 8.5e-92 340.9 181 90.6
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 2.2e-84 316.2 175 85.1
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 4.1e-78 295.4 241 60.6
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 5.9e-69 265.0 140 89.3
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 5.7e-64 248.4 214 60.3
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 2.8e-58 229.6 135 85.9
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 1.5e-56 223.8 143 80.4
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 7.5e-56 221.5 142 79.6
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 4.1e-54 215.7 220 55.9
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 2.2e-47 193.4 98 90.8
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 4.6e-45 185.7 93 92.5
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 6.2e-42 175.3 140 66.4
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 1.4e-41 174.1 108 80.6
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 3.7e-39 166.0 251 47.4
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 1.4e-38 164.1 103 77.7
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 4.1e-38 162.5 135 64.4
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 3.5e-37 159.5 92 84.8
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 2.1e-34 150.2 100 79.0
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 3.9e-28 129.4 81 79.0
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 2.5e-27 126.7 92 69.6
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 2.9e-23 113.2 111 57.7
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 9.3e-22 108.2 175 40.6
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 1.7e-20 104.0 64 81.2
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 9.0e-17 91.7 81 63.0
SHI17182 Sapria himalayana HOM05D000004 ORTHO05D367797 2.1e-10 70.5 56 67.9
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 1.8e-09 67.4 59 59.3
SHI30650 Sapria himalayana HOM05D004596 ORTHO05D005853 6.9e-09 65.5 62 61.3
C03p87270 Brassica napus HOM05D000836 ORTHO05D000709 2.6e-08 63.5 44 75.0
SHI32256 Sapria himalayana HOM05D003943 ORTHO05D001502 9.9e-08 61.6 35 80.0
BcaC05g26689 Brassica carinata HOM05D003943 ORTHO05D004753 1.4e-06 57.8 38 68.4
C04p30500 Brassica napus HOM05D002284 ORTHO05D033292 3.2e-06 56.6 34 76.5
BolC4t24585H Brassica oleracea HOM05D002284 ORTHO05D033292 7.1e-06 55.5 34 76.5


User provided reference genes

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