Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G2344 Fragaria x ananassa HOM05D005663 ORTHO05D007258 2.2e-31 138.3 68 100.0
FvH4_1g23570 Fragaria vesca HOM05D005663 ORTHO05D007258 1.3e-23 112.5 54 98.1
FAN26G2344 Fragaria x ananassa HOM05D005663 ORTHO05D007258 1.3e-23 112.5 54 98.1
FAN19G1272 Fragaria x ananassa HOM05D005663 ORTHO05D007258 5.0e-23 110.5 53 98.1
RcHm_v2.0_Chr2g0119121 Rosa chinensis HOM05D005663 ORTHO05D007258 9.4e-22 106.3 54 90.7
RcHm_v2.0_Chr2g0119061 Rosa chinensis HOM05D005663 ORTHO05D007258 1.2e-21 105.9 55 87.3
Lsat_1_v5_gn_4_138241 Lactuca sativa HOM05D005663 ORTHO05D007258 8.0e-21 103.2 50 92.0
HanXRQChr15g0490251 Helianthus annuus HOM05D005663 ORTHO05D007258 5.2e-20 100.5 50 90.0
MD15G1343200 Malus domestica HOM05D005663 ORTHO05D007258 5.2e-20 100.5 50 90.0
CANSAT01G3211 Cannabis sativa HOM05D005663 ORTHO05D007258 6.8e-20 100.1 50 90.0
ECA238G2757 Erigeron canadensis HOM05D005663 ORTHO05D007258 6.8e-20 100.1 50 90.0
Eucgr.I00244 Eucalyptus grandis HOM05D005663 ORTHO05D007258 6.8e-20 100.1 50 88.0
Ciclev10026263m.g Citrus clementina HOM05D005663 ORTHO05D007258 1.2e-19 99.4 49 89.8
Duzib264G0763 Durio zibethinus HOM05D005663 ORTHO05D007258 1.2e-19 99.4 54 83.3
CSS0003387 Camellia sinensis var. sinensis HOM05D005663 ORTHO05D007258 2.0e-19 98.6 55 81.8
CSS0035922 Camellia sinensis var. sinensis HOM05D005663 ORTHO05D007258 2.0e-19 98.6 50 90.0
Haze_25187 Corylus avellana HOM05D005663 ORTHO05D007258 2.0e-19 98.6 55 81.8
Haze_25191 Corylus avellana HOM05D005663 ORTHO05D007258 2.0e-19 98.6 55 81.8
Haze_25195 Corylus avellana HOM05D005663 ORTHO05D007258 2.0e-19 98.6 55 81.8
Psat7g048760 Pisum sativum HOM05D005663 ORTHO05D007258 2.0e-19 98.6 50 86.0
Medtr8g092680 Medicago truncatula HOM05D005663 ORTHO05D007258 2.6e-19 98.2 50 86.0
Actinidia06667 Actinidia chinensis HOM05D005663 ORTHO05D007258 3.4e-19 97.8 50 88.0
arahy.Tifrunner.gnm1.ann1.6JE7GZ Arachis hypogaea HOM05D005663 ORTHO05D007258 3.4e-19 97.8 50 86.0
Lj4A856T34 Lonicera japonica HOM05D005663 ORTHO05D007258 3.4e-19 97.8 55 80.0
Dinv15112 Davidia involucrata HOM05D005663 ORTHO05D007258 4.4e-19 97.4 50 88.0
Gorai.010G181700 Gossypium raimondii HOM05D005663 ORTHO05D007258 4.4e-19 97.4 50 90.0
TPR.G2176 Trifolium pratense HOM05D005663 ORTHO05D007258 4.4e-19 97.4 50 84.0
vmacro18658 Vaccinium macrocarpon HOM05D005663 ORTHO05D007258 4.4e-19 97.4 55 80.0
DCAR_027256 Daucus carota HOM05D005663 ORTHO05D007258 5.7e-19 97.1 50 86.0
Nitab4.5_0002064g0060 Nicotiana tabacum HOM05D005663 ORTHO05D007258 5.7e-19 97.1 50 84.0
Nitab4.5_0009320g0020 Nicotiana tabacum HOM05D005663 ORTHO05D007258 5.7e-19 97.1 50 84.0
Potri.001G309300 Populus trichocarpa HOM05D005663 ORTHO05D007258 7.5e-19 96.7 50 86.0
QL06p051868 Quercus lobata HOM05D005663 ORTHO05D007258 7.5e-19 96.7 53 83.0
Migut.H01114 Erythranthe guttata HOM05D005663 ORTHO05D007258 9.7e-19 96.3 47 91.5
Prupe.6G163100 Prunus persica HOM05D005663 ORTHO05D007258 9.7e-19 96.3 50 86.0
arahy.Tifrunner.gnm1.ann1.67XQRG Arachis hypogaea HOM05D005663 ORTHO05D007258 1.3e-18 95.9 50 84.0
Gohir.A06G149400 Gossypium hirsutum HOM05D005663 ORTHO05D007258 1.3e-18 95.9 50 88.0
Nn5g28726 Nelumbo nucifera HOM05D005663 ORTHO05D007258 1.7e-18 95.5 50 82.0
arahy.Tifrunner.gnm1.ann1.SHST7E Arachis hypogaea HOM05D005663 ORTHO05D007258 2.2e-18 95.1 51 80.4
Glyma.05G188200 Glycine max HOM05D005663 ORTHO05D007258 2.8e-18 94.7 50 82.0
Atru.chr4.540 Acer truncatum HOM05D005663 ORTHO05D007258 4.8e-18 94.0 52 78.8
CiPaw.03G123800 Carya illinoinensis HOM05D005663 ORTHO05D007258 4.8e-18 94.0 55 80.0
SalBow2G3104 Salvia bowleyana HOM05D005663 ORTHO05D007258 4.8e-18 94.0 46 93.5
Thecc.01G121000 Theobroma cacao HOM05D005663 ORTHO05D007258 4.8e-18 94.0 50 86.0
GSVIVG01026586001 Vitis vinifera HOM05D005663 ORTHO05D007258 4.8e-18 94.0 49 81.6
Ah.03g146600 Amaranthus hybridus HOM05D005663 ORTHO05D007258 8.3e-18 93.2 51 78.4
MBI09_g18623_MAGBIO Magnolia biondii HOM05D005663 ORTHO05D007258 8.3e-18 93.2 49 81.6
arahy.Tifrunner.gnm1.ann1.ILAW0V Arachis hypogaea HOM05D005663 ORTHO05D007258 1.1e-17 92.8 50 80.0
Glyma.08G146300 Glycine max HOM05D005663 ORTHO05D007258 1.1e-17 92.8 50 78.0
Gorai.002G151300 Gossypium raimondii HOM05D005663 ORTHO05D007258 1.1e-17 92.8 50 86.0
Hund03480 Selenicereus undatus HOM05D005663 ORTHO05D007258 1.1e-17 92.8 50 80.0
Hma1.2p1_0006F.1_g004880 Hydrangea macrophylla HOM05D005663 ORTHO05D007258 1.4e-17 92.4 55 72.7
Phvul.002G269000 Phaseolus vulgaris HOM05D005663 ORTHO05D007258 1.4e-17 92.4 50 80.0
MBI09_g20114_MAGBIO Magnolia biondii HOM05D005663 ORTHO05D007258 3.1e-17 91.3 49 81.6
SGA_v2.0_scaffold137G35114 Striga asiatica HOM05D005663 ORTHO05D007258 4.1e-17 90.9 50 78.0
PGSC0003DMG400003986 Solanum tuberosum HOM05D005663 ORTHO05D007258 5.3e-17 90.5 47 83.0
Lalb_Chr12g0203341 Lupinus albus HOM05D005663 ORTHO05D007258 7.0e-17 90.1 48 81.2
Manes.13G086600 Manihot esculenta HOM05D005663 ORTHO05D007258 7.0e-17 90.1 49 81.6
TWI75G0275 Tripterygium wilfordii HOM05D005663 ORTHO05D007258 7.0e-17 90.1 51 74.5
VMungo0251G2076 Vigna mungo HOM05D005663 ORTHO05D007258 7.0e-17 90.1 50 76.0
Cc07_g17370 Coffea canephora HOM05D005663 ORTHO05D007258 1.2e-16 89.4 49 77.6
Os04g0422000 Oryza sativa ssp. japonica HOM05D005663 ORTHO05D007258 1.2e-16 89.4 49 75.5
Mapoly0058s0022 Marchantia polymorpha HOM05D005663 ORTHO05D007258 1.6e-16 89.0 48 77.1
Zm00001eb083210 Zea mays HOM05D005663 ORTHO05D007258 1.6e-16 89.0 50 74.0
Aqoxy3G02633 Aquilegia oxysepala HOM05D005663 ORTHO05D007258 2.0e-16 88.6 50 76.0
PSO541G2505 Papaver somniferum HOM05D005663 ORTHO05D007258 2.0e-16 88.6 47 80.9
PSO675G3544 Papaver somniferum HOM05D005663 ORTHO05D007258 2.0e-16 88.6 47 80.9
Solyc11g005340.3 Solanum lycopersicum HOM05D005663 ORTHO05D007258 2.0e-16 88.6 47 80.9
SEGI_39378 Sequoiadendron giganteum HOM05D005663 ORTHO05D007258 4.5e-16 87.4 48 75.0
unitig_899.g14706 Utricularia gibba HOM05D005663 ORTHO05D007258 4.5e-16 87.4 61 67.2
Pp3c3_12020 Physcomitrium patens HOM05D005663 ORTHO05D007258 5.9e-16 87.0 52 69.2
Sopen11g001350 Solanum pennellii HOM05D005663 ORTHO05D007258 5.9e-16 87.0 47 80.9
CDE12G0169 Ceratophyllum demersum HOM05D005663 ORTHO05D007258 7.7e-16 86.7 51 72.5
EL10Ac6g15254 Beta vulgaris HOM05D005663 ORTHO05D007258 1.0e-15 86.3 55 65.5
HPP92_016149 Vanilla planifolia HOM05D005663 ORTHO05D007258 1.3e-15 85.9 55 65.5
CDE04G2754 Ceratophyllum demersum HOM05D005663 ORTHO05D007258 5.0e-15 84.0 51 72.5
SMO358G0575 Selaginella moellendorffii HOM05D005663 ORTHO05D007258 1.9e-14 82.0 47 74.5
Thecc.01G121200 Theobroma cacao HOM05D005663 ORTHO05D007258 1.9e-14 82.0 49 73.5
Lj4g0014342 Lotus japonicus HOM05D005663 ORTHO05D007258 2.5e-14 81.6 79 53.2
Carub.0006s0824 Capsella rubella HOM05D005663 ORTHO05D007258 4.2e-14 80.9 54 59.3
AL6G20230 Arabidopsis lyrata HOM05D005663 ORTHO05D007258 9.4e-14 79.7 55 58.2
CARHR203580 Cardamine hirsuta HOM05D005663 ORTHO05D007258 1.6e-13 79.0 54 59.3
AT5G09820 Arabidopsis thaliana HOM05D005663 ORTHO05D007258 2.1e-13 78.6 55 58.2
Duzib147G1259 Durio zibethinus HOM05D005663 ORTHO05D007258 2.1e-13 78.6 49 67.3
A03p04280 Brassica napus HOM05D005663 ORTHO05D007258 4.7e-13 77.4 50 62.0
BolC3t13007H Brassica oleracea HOM05D005663 ORTHO05D007258 4.7e-13 77.4 50 62.0
Aa31LG3G17290 Aethionema arabicum HOM05D005663 ORTHO05D007258 6.1e-13 77.0 49 61.2
BraA03t09772Z Brassica rapa HOM05D005663 ORTHO05D007258 6.1e-13 77.0 50 62.0
Thhalv10014407m.g Eutrema salsugineum HOM05D005663 ORTHO05D007258 6.1e-13 77.0 49 63.3
Sp6g33590 Schrenkiella parvula HOM05D005663 ORTHO05D007258 1.8e-12 75.5 50 60.0
THA.LOC104818465 Tarenaya hassleriana HOM05D005663 ORTHO05D007258 3.4e-11 71.2 49 59.2
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 4.4e-11 70.9 51 56.9
Cre03.g188700 Chlamydomonas reinhardtii HOM05D005663 ORTHO05D007258 1.7e-07 58.9 64 46.9
Peaxi162Scf00025g02122 Petunia axillaris HOM05D005663 ORTHO05D007258 3.8e-07 57.8 27 88.9
PGR119G0285 Punica granatum HOM05D005663 ORTHO05D007258 3.8e-07 57.8 27 88.9
Oeu047646.1 Olea europaea HOM05D005663 ORTHO05D007258 5.0e-07 57.4 40 67.5
TAR625G0848 Trochodendron aralioides HOM05D005663 ORTHO05D007258 1.9e-06 55.5 27 85.2


User provided reference genes

Program Settings