Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G2175 Fragaria x ananassa HOM05D007528 ORTHO05D008503 2.7e-149 531.9 260 100.0
FvH4_1g29750 Fragaria vesca HOM05D007528 ORTHO05D008503 1.9e-147 525.8 260 98.8
FAN26G0883 Fragaria x ananassa HOM05D007528 ORTHO05D008503 3.6e-146 521.5 260 98.5
RcHm_v2.0_Chr3g0495771 Rosa chinensis HOM05D007528 ORTHO05D008503 3.2e-126 455.3 261 87.7
MD12G1013500 Malus domestica HOM05D007528 ORTHO05D008503 3.0e-84 315.8 263 66.2
Sabra06G0018500 Salix brachista HOM05D007528 ORTHO05D008503 1.9e-78 296.6 250 63.6
Potri.006G025200 Populus trichocarpa HOM05D007528 ORTHO05D008503 1.8e-76 290.0 246 63.8
QL11p009983 Quercus lobata HOM05D007528 ORTHO05D008503 2.3e-76 289.7 259 59.1
Atru.chr8.936 Acer truncatum HOM05D007528 ORTHO05D008503 3.0e-76 289.3 260 60.8
TAR623G0014 Trochodendron aralioides HOM05D007528 ORTHO05D008503 3.0e-76 289.3 248 63.7
Manes.09G073900 Manihot esculenta HOM05D007528 ORTHO05D008503 6.7e-76 288.1 201 70.6
Thecc.05G128400 Theobroma cacao HOM05D007528 ORTHO05D008503 2.1e-74 283.1 212 67.5
Ciclev10012580m.g Citrus clementina HOM05D007528 ORTHO05D008503 2.8e-74 282.7 230 63.5
CANSAT21G0864 Cannabis sativa HOM05D007528 ORTHO05D008503 4.8e-74 282.0 249 61.8
COL.COLO4_08087 Corchorus olitorius HOM05D007528 ORTHO05D008503 4.8e-74 282.0 193 71.5
Duzib093G0275 Durio zibethinus HOM05D007528 ORTHO05D008503 4.8e-74 282.0 197 69.0
Dinv14550 Davidia involucrata HOM05D007528 ORTHO05D008503 1.4e-73 280.4 197 69.0
Nn7g37298 Nelumbo nucifera HOM05D007528 ORTHO05D008503 1.5e-72 276.9 196 67.9
arahy.Tifrunner.gnm1.ann1.ARK2IX Arachis hypogaea HOM05D007528 ORTHO05D008503 3.4e-72 275.8 199 67.8
PGR042G1749 Punica granatum HOM05D007528 ORTHO05D008503 7.6e-72 274.6 270 57.0
MBI13_g02396_MAGBIO Magnolia biondii HOM05D007528 ORTHO05D008503 1.0e-71 274.2 202 65.3
GSVIVG01025860001 Vitis vinifera HOM05D007528 ORTHO05D008503 1.0e-71 274.2 254 58.7
Eucgr.A02169 Eucalyptus grandis HOM05D007528 ORTHO05D008503 1.3e-71 273.9 218 65.1
CSS0027135 Camellia sinensis var. sinensis HOM05D007528 ORTHO05D008503 6.5e-71 271.6 204 66.2
Gohir.A01G197400 Gossypium hirsutum HOM05D007528 ORTHO05D008503 4.2e-70 268.9 254 57.5
Cpa.g.sc33.188 Carica papaya HOM05D007528 ORTHO05D008503 7.2e-70 268.1 193 67.4
Gohir.D01G187600 Gossypium hirsutum HOM05D007528 ORTHO05D008503 7.2e-70 268.1 254 56.7
Gorai.002G231000 Gossypium raimondii HOM05D007528 ORTHO05D008503 7.2e-70 268.1 254 57.1
Ca_08340_v3 Cicer arietinum L. HOM05D007528 ORTHO05D008503 6.1e-69 265.0 229 60.3
THA.LOC104803254 Tarenaya hassleriana HOM05D007528 ORTHO05D008503 7.9e-69 264.6 209 64.6
TWI63G0885 Tripterygium wilfordii HOM05D007528 ORTHO05D008503 1.3e-68 263.8 198 66.7
arahy.Tifrunner.gnm1.ann1.ZMQ31P Arachis hypogaea HOM05D007528 ORTHO05D008503 3.0e-68 262.7 176 69.9
Glyma.19G123400 Glycine max HOM05D007528 ORTHO05D008503 3.0e-68 262.7 177 71.8
Haze_09241 Corylus avellana HOM05D007528 ORTHO05D006305 3.9e-68 262.3 199 65.8
Psat3g082960 Pisum sativum HOM05D007528 ORTHO05D008503 5.1e-68 261.9 227 61.7
TPR.G23704 Trifolium pratense HOM05D007528 ORTHO05D008503 6.7e-68 261.5 176 71.0
Medtr7g088210 Medicago truncatula HOM05D007528 ORTHO05D008503 8.7e-68 261.2 212 62.7
MSTRG.19743 Avicennia marina HOM05D007528 ORTHO05D008503 1.1e-67 260.8 259 54.1
Thhalv10017145m.g Eutrema salsugineum HOM05D007528 ORTHO05D008503 1.1e-67 260.8 232 59.5
Lj1g0006388 Lotus japonicus HOM05D007528 ORTHO05D008503 1.1e-67 260.8 259 55.2
SalBow6G5282 Salvia bowleyana HOM05D007528 ORTHO05D008503 1.1e-67 260.8 196 64.8
SalBow6G5858 Salvia bowleyana HOM05D007528 ORTHO05D008503 1.1e-67 260.8 196 64.8
Lalb_Chr22g0358311 Lupinus albus HOM05D007528 ORTHO05D008503 3.3e-67 259.2 248 54.8
PSO729G0248 Papaver somniferum HOM05D007528 ORTHO05D008503 5.7e-67 258.5 183 67.2
Aqoxy2G00067 Aquilegia oxysepala HOM05D007528 ORTHO05D008503 7.4e-67 258.1 234 57.3
Nitab4.5_0000382g0060 Nicotiana tabacum HOM05D007528 ORTHO05D008503 9.7e-67 257.7 244 54.9
Prupe.7G017900 Prunus persica HOM05D007528 ORTHO05D008503 9.7e-67 257.7 216 67.1
FAN19G0638 Fragaria x ananassa HOM05D007528 ORTHO05D008503 1.7e-66 256.9 130 96.2
Carub.0004s2343 Capsella rubella HOM05D007528 ORTHO05D008503 2.2e-66 256.5 244 55.3
vmacro12911 Vaccinium macrocarpon HOM05D007528 ORTHO05D008503 2.2e-66 256.5 254 55.9
DCAR_013508 Daucus carota HOM05D007528 ORTHO05D008503 3.7e-66 255.8 216 59.7
AL4G39090 Arabidopsis lyrata HOM05D007528 ORTHO05D008503 4.8e-66 255.4 238 57.1
Phvul.001G109000 Phaseolus vulgaris HOM05D007528 ORTHO05D008503 6.3e-66 255.0 250 58.4
AT2G41120 Arabidopsis thaliana HOM05D007528 ORTHO05D008503 8.2e-66 254.6 238 56.7
PGSC0003DMG400019757 Solanum tuberosum HOM05D007528 ORTHO05D008503 8.2e-66 254.6 210 59.5
CDE04G0261 Ceratophyllum demersum HOM05D007528 ORTHO05D008503 1.1e-65 254.2 195 61.0
Cc06_g21080 Coffea canephora HOM05D007528 ORTHO05D008503 4.1e-65 252.3 249 54.2
Lj2A414T28 Lonicera japonica HOM05D007528 ORTHO05D008503 9.1e-65 251.1 244 55.3
BraA04t18594Z Brassica rapa HOM05D007528 ORTHO05D008503 2.6e-64 249.6 238 57.6
Solyc03g044630.2 Solanum lycopersicum HOM05D007528 ORTHO05D008503 3.4e-64 249.2 211 57.8
BolC4t28382H Brassica oleracea HOM05D007528 ORTHO05D008503 4.5e-64 248.8 251 53.4
Peaxi162Scf00183g00712 Petunia axillaris HOM05D007528 ORTHO05D008503 4.5e-64 248.8 246 54.5
C04p68770 Brassica napus HOM05D007528 ORTHO05D008503 7.7e-64 248.1 251 53.8
Sp4g23430 Schrenkiella parvula HOM05D007528 ORTHO05D008503 7.7e-64 248.1 235 55.7
Migut.J01598 Erythranthe guttata HOM05D007528 ORTHO05D008503 1.0e-63 247.7 197 58.4
Aa31LG3G960 Aethionema arabicum HOM05D007528 ORTHO05D008503 1.3e-63 247.3 196 60.7
A04p31360 Brassica napus HOM05D007528 ORTHO05D008503 1.3e-63 247.3 239 55.2
Oeu032951.1 Olea europaea HOM05D007528 ORTHO05D008503 1.7e-63 246.9 199 60.8
Sed0015046 Sechium edule HOM05D007528 ORTHO05D008503 8.5e-63 244.6 198 63.1
HanXRQChr04g0125621 Helianthus annuus HOM05D007528 ORTHO05D008503 1.4e-62 243.8 216 56.5
ClCG10G016790 Citrullus lanatus HOM05D007528 ORTHO05D008503 3.2e-62 242.7 199 64.3
CsaV3_3G039560 Cucumis sativus L. HOM05D007528 ORTHO05D008503 3.2e-62 242.7 252 54.8
Lsat_1_v5_gn_8_83941 Lactuca sativa HOM05D007528 ORTHO05D008503 1.2e-61 240.7 175 63.4
ECA236G1579 Erigeron canadensis HOM05D007528 ORTHO05D008503 3.6e-61 239.2 184 61.4
ATR0307G122 Amborella trichopoda HOM05D007528 ORTHO05D008503 8.8e-60 234.6 198 55.1
EL10Ac5g11614 Beta vulgaris HOM05D007528 ORTHO05D008503 7.4e-59 231.5 205 55.6
BcaNung05626 Brassica carinata HOM05D007528 ORTHO05D008503 1.5e-56 223.8 259 49.4
CARHR136210 Cardamine hirsuta HOM05D007528 ORTHO05D008503 1.0e-55 221.1 180 63.3
SEGI_20851 Sequoiadendron giganteum HOM05D007528 ORTHO05D008503 2.9e-55 219.5 209 54.5
Os11g0130200 Oryza sativa ssp. japonica HOM05D007528 ORTHO05D008503 2.7e-53 213.0 198 56.1
CiPaw.13G169300 Carya illinoinensis HOM05D007528 ORTHO05D008503 2.3e-52 209.9 170 64.7
Mapoly0168s0009 Marchantia polymorpha HOM05D007528 ORTHO05D008503 3.0e-52 209.5 205 51.7
Zm00001eb195960 Zea mays HOM05D007528 ORTHO05D008503 3.9e-52 209.1 188 56.9
AagrBONN_evm.TU.Sc2ySwM_344.4238 Anthoceros agrestis HOM05D007528 ORTHO05D008503 9.7e-51 204.5 195 54.9
Rhsim10G0151800 Rhododendron simsii HOM05D007528 ORTHO05D008503 8.2e-50 201.4 356 38.2
Pp3c21_6860 Physcomitrium patens HOM05D007528 ORTHO05D008503 2.6e-48 196.4 200 50.5
SMO266G0100 Selaginella moellendorffii HOM05D007528 ORTHO05D008503 1.5e-46 190.7 173 52.0
CBR_g37627 Chara braunii HOM05D007528 ORTHO05D008503 7.5e-43 178.3 150 54.7
FAN23G1305 Fragaria x ananassa HOM05D007528 ORTHO05D029410 3.0e-36 156.4 82 92.7
BcaC02g12850 Brassica carinata HOM05D007528 ORTHO05D008503 6.3e-34 148.7 168 49.4
Sopen03g008910 Solanum pennellii HOM05D007528 ORTHO05D008503 5.4e-33 145.6 116 60.3
CAN.G1129.33 Capsicum annuum HOM05D007528 ORTHO05D008503 5.9e-32 142.1 116 60.3
unitig_21.g20663 Utricularia gibba HOM05D007528 ORTHO05D008503 1.4e-28 131.0 205 41.0
Glyma.03G119100 Glycine max HOM05D007528 ORTHO05D008503 7.5e-27 125.2 121 56.2
Glyma.03G119000 Glycine max HOM05D007528 ORTHO05D008503 4.4e-19 99.4 107 49.5
SEGI_18622 Sequoiadendron giganteum HOM05D007528 ORTHO05D008503 6.4e-18 95.5 88 52.3
VMungo1383G2363 Vigna mungo HOM05D007528 ORTHO05D008503 1.2e-16 91.3 126 43.7
Hma1.2p1_1327F.1_g275910 Hydrangea macrophylla HOM05D007528 ORTHO05D008503 5.2e-12 75.9 64 67.2
Cfa011867 Carpinus fangiana HOM05D007528 ORTHO05D008503 7.5e-11 72.0 59 64.4
FAN23G0455 Fragaria x ananassa HOM05D022609 ORTHO05D001690 2.1e-08 63.9 31 96.8


User provided reference genes

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