Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 6383.9 3232 100.0
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 6229.4 3232 97.8
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 6213.6 3232 97.3
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 6193.2 3232 97.1
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 6193.2 3232 97.2
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 5798.8 3235 91.5
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 5060.7 3250 80.2
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 4833.5 3254 77.1
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 4370.8 3260 69.7
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 4357.4 3255 69.8
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 4185.9 3289 67.1
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 4169.0 3260 67.2
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 4157.4 3271 66.7
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 4110.5 3260 66.0
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 4100.8 3272 65.8
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 4096.6 3260 66.0
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 4058.8 3254 66.0
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 4015.3 3265 64.8
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 4011.8 3258 64.9
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 4001.1 3272 64.6
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 3967.9 3313 63.5
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 3944.4 3251 63.9
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 3943.3 3285 63.7
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 3932.9 3264 64.1
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3931.3 3265 63.7
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 3914.4 3261 63.5
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3899.4 3260 63.5
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 3897.8 3256 63.8
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3866.6 3269 62.9
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3855.8 3272 62.9
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 3833.9 3246 62.8
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 3812.3 3261 62.3
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 3811.5 3260 62.2
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 3794.2 3252 62.6
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3733.3 2885 67.8
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 3731.8 3269 60.5
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 3724.5 3379 60.2
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 3716.4 3301 60.6
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 3707.1 3271 60.2
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 3669.8 3266 59.6
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 3667.9 3270 60.3
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 3649.8 3274 59.7
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3629.7 3273 60.8
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 3527.3 3314 57.8
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 3523.8 3281 58.2
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3505.7 3289 58.1
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3493.4 3294 58.1
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 3480.6 3262 58.2
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 3479.9 3271 57.9
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 3469.1 3272 57.9
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 3467.9 3267 57.7
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 3452.5 3262 57.6
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3439.8 3253 57.1
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 3437.9 3020 61.0
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 3432.5 3253 57.1
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3432.1 3259 57.1
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 3427.1 3261 57.1
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 3401.7 3327 56.3
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 3389.4 3269 57.1
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 3386.7 3259 56.9
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 3377.4 3282 57.2
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3377.4 3277 57.0
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 3373.2 3253 57.1
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 3368.6 3267 56.6
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 3362.8 3272 56.5
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 3352.0 3147 57.7
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 3313.9 3285 55.8
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3278.8 3279 54.9
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 3241.4 3260 55.4
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 3231.4 3299 54.4
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 3203.3 3247 54.7
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 3093.9 2702 61.0
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 3028.4 2441 65.2
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 2972.6 2021 75.5
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 2931.4 3103 53.3
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 2899.8 3021 54.3
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2731.1 3130 50.7
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 2636.3 3283 47.1
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 2507.2 2466 55.4
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 2354.3 1601 76.5
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 2274.2 2573 51.3
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 2227.2 1694 68.4
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 2213.7 2007 59.3
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 0.0e+00 2128.2 3048 42.3
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 2038.8 2425 48.0
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2033.5 1507 70.6
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 2005.3 1468 70.9
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 0.0e+00 2003.0 1796 61.4
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 1998.4 2831 43.2
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1994.5 2448 46.7
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 1929.8 1447 71.0
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1913.3 3295 37.8
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1891.7 3307 37.9
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1821.6 3534 36.0
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1642.1 1004 83.4
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 0.0e+00 1505.0 1239 62.8
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1499.6 2190 42.8
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1446.4 1746 47.3
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 1358.6 1498 51.1
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1356.7 971 71.7
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 0.0e+00 1290.0 1540 48.1
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1249.2 1017 64.8
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 0.0e+00 1241.5 1553 47.5
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1210.3 843 73.4
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 1161.0 1505 44.8
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1144.0 835 71.0
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 1077.4 1137 55.8
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 9.5e-305 1052.0 974 59.5
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 4.0e-303 1046.6 852 64.1
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 1.2e-291 1008.4 3375 27.6
COL.COLO4_22364 Corchorus olitorius HOM05D004165 ORTHO05D005063 1.6e-291 1008.1 891 59.5
GSVIVG01022256001 Vitis vinifera HOM05D004165 ORTHO05D005063 9.3e-268 929.1 752 63.6
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 3.2e-252 877.5 1309 41.3
Haze_25071 Corylus avellana HOM05D004165 ORTHO05D005063 9.1e-223 779.6 815 52.0
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 5.5e-204 717.2 441 80.7
COL.COLO4_22365 Corchorus olitorius HOM05D004165 ORTHO05D005063 1.2e-203 716.1 815 48.6
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 2.3e-202 711.8 411 88.3
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 6.4e-184 650.6 863 44.7
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 7.5e-177 627.1 970 40.8
Dinv05635 Davidia involucrata HOM05D004165 ORTHO05D005063 3.9e-157 561.6 818 42.9
Haze_25069 Corylus avellana HOM05D004165 ORTHO05D005063 2.2e-152 545.8 411 68.9
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 2.4e-143 515.8 656 45.1
Peaxi162Scf00702g00611 Petunia axillaris HOM05D004165 ORTHO05D005063 6.5e-136 491.1 462 55.6
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 6.3e-131 474.6 327 71.9
DCAR_016673 Daucus carota HOM05D004165 ORTHO05D005063 1.3e-128 466.8 804 37.2
CAN.G1044.6 Capsicum annuum HOM05D004165 ORTHO05D005063 2.3e-125 456.1 270 81.5
CAN.G1044.9 Capsicum annuum HOM05D004165 ORTHO05D005063 3.9e-125 455.3 823 36.0
COL.COLO4_22363 Corchorus olitorius HOM05D004165 ORTHO05D005063 3.7e-123 448.7 250 88.0
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 5.1e-117 428.3 301 73.4
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 2.0e-116 426.4 578 47.1
SHI11781 Sapria himalayana HOM05D004165 ORTHO05D005063 6.3e-115 421.4 921 33.7
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 2.6e-113 416.0 608 44.4
CAN.G1044.7 Capsicum annuum HOM05D004165 ORTHO05D005063 6.3e-107 394.8 416 53.1
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 1.8e-106 393.3 343 63.6
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 6.3e-99 368.2 217 86.6
SHI11786 Sapria himalayana HOM05D004165 ORTHO05D005063 1.1e-95 357.5 502 41.8
Cpa.g.sc72.14 Carica papaya HOM05D004165 ORTHO05D005063 5.2e-93 348.6 252 67.1
SHI11797 Sapria himalayana HOM05D004165 ORTHO05D005063 4.4e-92 345.5 244 68.0
CDE07G1151 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 4.8e-91 342.0 824 31.2
Cpa.g.sc72.15 Carica papaya HOM05D004165 ORTHO05D005063 2.7e-89 336.3 356 52.0
Oeu054940.1 Olea europaea HOM05D004165 ORTHO05D005063 8.0e-86 324.7 651 33.2
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.3e-80 306.6 311 54.3
SEGI_28346 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 6.8e-77 295.0 958 27.6
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 1.2e-73 284.3 326 49.4
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 2.7e-73 283.1 305 51.8
TAR629G2775 Trochodendron aralioides HOM05D004165 ORTHO05D005063 3.5e-73 282.7 804 29.2
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 1.1e-61 244.6 155 78.1
SHI11785 Sapria himalayana HOM05D004165 ORTHO05D005063 1.1e-58 234.6 335 42.1
Os01g0182832 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 5.6e-55 222.2 717 27.2
AagrBONN_evm.TU.Sc2ySwM_344.5500 Anthoceros agrestis HOM05D004165 ORTHO05D005063 6.2e-54 218.8 753 27.6
SMO116G0288 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 3.2e-50 206.5 396 35.9
SHI11788 Sapria himalayana HOM05D004165 ORTHO05D005063 2.2e-43 183.7 194 51.5
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 6.9e-37 162.2 118 70.3
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 8.7e-32 145.2 82 85.4
arahy.Tifrunner.gnm1.ann1.SA1CMP Arachis hypogaea HOM05D004165 ORTHO05D023735 1.6e-30 141.0 142 54.9
Psat5g190880 Pisum sativum HOM05D004165 ORTHO05D326560 1.2e-28 134.8 97 72.2
PGSC0003DMG401020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 5.5e-26 125.9 113 50.4
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 7.9e-25 122.1 114 60.5
Dinv05988 Davidia involucrata HOM05D004165 ORTHO05D005063 1.3e-24 121.3 86 69.8
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 1.3e-24 121.3 91 71.4
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 1.3e-24 121.3 111 62.2
SHI11789 Sapria himalayana HOM05D004165 ORTHO05D005063 3.7e-22 113.2 107 59.8
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 3.1e-21 110.2 70 78.6
PGSC0003DMG400026832 Solanum tuberosum HOM05D004165 ORTHO05D005063 5.5e-18 99.4 103 46.6
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 2.3e-16 94.0 60 68.3
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 7.4e-15 89.0 145 37.2
Cpa.g.c46795 Carica papaya HOM05D004165 ORTHO05D005063 1.4e-10 74.7 56 67.9
Lsat_1_v5_gn_3_124661 Lactuca sativa HOM05D004165 ORTHO05D232501 4.2e-10 73.2 92 50.0
Lsat_1_v5_gn_3_81660 Lactuca sativa HOM05D000921 ORTHO05D002852 3.6e-09 70.1 107 41.1
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 3.6e-09 70.1 76 47.4
Lsat_1_v5_gn_5_173760 Lactuca sativa HOM05D000298 ORTHO05D233122 7.9e-09 68.9 98 45.9
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 5.1e-08 66.2 45 73.3


User provided reference genes

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