Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G2084 Fragaria x ananassa HOM05D006718 ORTHO05D008492 0.0e+00 1088.6 568 100.0
FAN23G2020 Fragaria x ananassa HOM05D006718 ORTHO05D008492 3.2e-296 1021.1 576 94.3
FAN19G2415 Fragaria x ananassa HOM05D006718 ORTHO05D008492 9.2e-296 1019.6 578 94.1
FvH4_1g30390 Fragaria vesca HOM05D006718 ORTHO05D008492 9.5e-293 1009.6 579 93.6
RcHm_v2.0_Chr3g0490591 Rosa chinensis HOM05D006718 ORTHO05D008492 1.2e-231 806.6 575 79.3
FAN26G3384 Fragaria x ananassa HOM05D006718 ORTHO05D008492 7.7e-202 707.6 629 68.5
Prupe.2G061400 Prunus persica HOM05D006718 ORTHO05D008492 6.2e-159 565.1 623 56.7
MD02G1263300 Malus domestica HOM05D006718 ORTHO05D008492 1.3e-132 477.6 601 53.2
MD07G1054700 Malus domestica HOM05D006718 ORTHO05D008492 1.0e-129 468.0 594 52.7
QL04p050382 Quercus lobata HOM05D006718 ORTHO05D008492 1.1e-102 378.3 630 47.8
Cfa010452 Carpinus fangiana HOM05D006718 ORTHO05D008492 8.0e-98 362.1 617 44.7
Haze_03406 Corylus avellana HOM05D006718 ORTHO05D008492 8.8e-97 358.6 686 43.6
TWI38G0042 Tripterygium wilfordii HOM05D006718 ORTHO05D008492 3.5e-77 293.5 590 41.7
CANSAT56G0860 Cannabis sativa HOM05D006718 ORTHO05D008492 3.4e-72 276.9 584 38.9
Phvul.011G216700 Phaseolus vulgaris HOM05D006718 ORTHO05D008492 9.2e-70 268.9 649 37.3
CsaV3_6G004530 Cucumis sativus L. HOM05D006718 ORTHO05D008492 2.0e-69 267.7 560 41.4
MELO3C019922.2 Cucumis melo HOM05D006718 ORTHO05D008492 2.7e-69 267.3 545 40.7
Manes.07G082900 Manihot esculenta HOM05D006718 ORTHO05D008492 1.0e-68 265.4 596 39.3
CiPaw.13G047100 Carya illinoinensis HOM05D006718 ORTHO05D008492 5.0e-68 263.1 490 43.5
ClCG08G008520 Citrullus lanatus HOM05D006718 ORTHO05D008492 4.3e-67 260.0 620 39.5
Glyma.14G084400 Glycine max HOM05D006718 ORTHO05D008492 8.0e-66 255.8 609 37.6
Lalb_Chr25g0284721 Lupinus albus HOM05D006718 ORTHO05D008492 6.4e-63 246.1 548 38.1
Dinv24591 Davidia involucrata HOM05D006718 ORTHO05D008492 2.4e-62 244.2 610 35.9
Atru.chr12.1182 Acer truncatum HOM05D006718 ORTHO05D008492 1.3e-60 238.4 362 45.9
Sed0008467 Sechium edule HOM05D006718 ORTHO05D008492 3.0e-60 237.3 608 39.5
TAR369G0954 Trochodendron aralioides HOM05D006718 ORTHO05D008492 5.0e-60 236.5 540 38.7
Glyma.17G240500 Glycine max HOM05D006718 ORTHO05D008492 1.5e-59 235.0 641 35.6
Thecc.10G129200 Theobroma cacao HOM05D006718 ORTHO05D008492 1.8e-57 228.0 523 40.7
VMungo0647G0438 Vigna mungo HOM05D006718 ORTHO05D008492 8.9e-57 225.7 503 37.8
Nn2g14019 Nelumbo nucifera HOM05D006718 ORTHO05D008492 3.4e-56 223.8 649 33.4
Ciclev10015184m.g Citrus clementina HOM05D006718 ORTHO05D008492 4.1e-54 216.9 485 38.8
Hund06826 Selenicereus undatus HOM05D006718 ORTHO05D008492 1.2e-53 215.3 562 35.6
Eucgr.J00311 Eucalyptus grandis HOM05D006718 ORTHO05D008492 6.0e-53 213.0 508 36.8
PSO339G3483 Papaver somniferum HOM05D006718 ORTHO05D008492 7.3e-51 206.1 558 34.9
Ca_03601_v3 Cicer arietinum L. HOM05D006718 ORTHO05D008492 2.8e-50 204.1 513 36.3
Lj3g0008993 Lotus japonicus HOM05D006718 ORTHO05D008492 2.0e-48 198.0 601 34.9
PGR044G1203 Punica granatum HOM05D006718 ORTHO05D008492 2.0e-48 198.0 602 34.9
PSO384G1654 Papaver somniferum HOM05D006718 ORTHO05D008492 2.6e-48 197.6 563 35.0
Gohir.A06G171400 Gossypium hirsutum HOM05D006718 ORTHO05D008492 4.4e-48 196.8 542 35.2
Lj7A493G35 Lonicera japonica HOM05D006718 ORTHO05D008492 4.4e-48 196.8 357 42.3
Duzib128G0030 Durio zibethinus HOM05D006718 ORTHO05D008492 5.8e-48 196.4 343 44.6
Gohir.D06G179500 Gossypium hirsutum HOM05D006718 ORTHO05D008492 1.9e-46 191.4 538 35.1
Gorai.010G210100 Gossypium raimondii HOM05D006718 ORTHO05D008492 1.9e-46 191.4 538 35.1
Sc09g0004890 Simmondsia chinensis HOM05D006718 ORTHO05D008492 5.4e-46 189.9 428 36.7
SGA_v2.0_scaffold196G40987 Striga asiatica HOM05D006718 ORTHO05D008492 2.1e-45 188.0 429 37.5
Sabra10G0192200 Salix brachista HOM05D006718 ORTHO05D008492 3.9e-44 183.7 373 39.1
Medtr2g067220 Medicago truncatula HOM05D006718 ORTHO05D008492 3.3e-43 180.6 584 34.9
MBI15_g36944_MAGBIO Magnolia biondii HOM05D006718 ORTHO05D008492 9.6e-43 179.1 378 37.8
Nitab4.5_0001611g0090 Nicotiana tabacum HOM05D006718 ORTHO05D008492 9.6e-43 179.1 415 41.0
MSTRG.5086 Avicennia marina HOM05D006718 ORTHO05D008492 1.2e-42 178.7 528 34.3
Potri.010G246500 Populus trichocarpa HOM05D006718 ORTHO05D008492 1.2e-42 178.7 390 38.2
Migut.O00435 Erythranthe guttata HOM05D006718 ORTHO05D008492 1.6e-42 178.3 547 32.9
EL10Ac4g08778 Beta vulgaris HOM05D006718 ORTHO05D008492 1.8e-41 174.9 612 32.0
CSS0042038 Camellia sinensis var. sinensis HOM05D006718 ORTHO05D008492 4.0e-41 173.7 280 41.8
AUR62014308 Chenopodium quinoa HOM05D006718 ORTHO05D008492 8.9e-41 172.6 572 33.0
AT5G18440 Arabidopsis thaliana HOM05D006718 ORTHO05D008492 1.5e-40 171.8 396 37.6
Carub.0006s1670 Capsella rubella HOM05D006718 ORTHO05D008492 2.0e-40 171.4 464 35.6
AUR62034103 Chenopodium quinoa HOM05D006718 ORTHO05D008492 3.4e-40 170.6 620 33.2
GSVIVG01027215001 Vitis vinifera HOM05D006718 ORTHO05D008492 7.6e-40 169.5 430 36.5
TPR.G33809 Trifolium pratense HOM05D006718 ORTHO05D008492 2.2e-39 167.9 607 31.8
Peaxi162Scf00647g00315 Petunia axillaris HOM05D006718 ORTHO05D008492 2.9e-39 167.5 599 33.6
Sopen01g040630 Solanum pennellii HOM05D006718 ORTHO05D008492 4.9e-39 166.8 573 34.7
CAN.G134.56 Capsicum annuum HOM05D006718 ORTHO05D008492 3.2e-38 164.1 482 36.9
Solyc01g096920.3 Solanum lycopersicum HOM05D006718 ORTHO05D008492 3.2e-38 164.1 626 33.5
COL.COLO4_28900 Corchorus olitorius HOM05D006718 ORTHO05D008492 3.5e-37 160.6 215 50.2
Ah.06g191200 Amaranthus hybridus HOM05D006718 ORTHO05D008492 4.6e-37 160.2 502 30.1
PGSC0003DMG400027524 Solanum tuberosum HOM05D006718 ORTHO05D008492 4.6e-37 160.2 586 33.4
AL6G29690 Arabidopsis lyrata HOM05D006718 ORTHO05D008492 7.8e-37 159.5 460 30.9
Nitab4.5_0005056g0030 Nicotiana tabacum HOM05D006718 ORTHO05D008492 7.8e-37 159.5 537 35.6
DCAR_006628 Daucus carota HOM05D006718 ORTHO05D008492 1.3e-36 158.7 286 40.6
Thhalv10013325m.g Eutrema salsugineum HOM05D006718 ORTHO05D008492 6.6e-36 156.4 477 32.5
Sp6g25880 Schrenkiella parvula HOM05D006718 ORTHO05D008492 1.5e-35 155.2 415 36.1
Rhsim01G0121600 Rhododendron simsii HOM05D006718 ORTHO05D008492 4.3e-35 153.7 650 32.5
SalBow4G0879 Salvia bowleyana HOM05D006718 ORTHO05D008492 4.3e-35 153.7 549 33.5
BcaB08g36679 Brassica carinata HOM05D006718 ORTHO05D008492 9.6e-35 152.5 403 35.5
Lsat_1_v5_gn_4_139420 Lactuca sativa HOM05D006718 ORTHO05D008492 9.6e-35 152.5 624 30.8
vmacro20846 Vaccinium macrocarpon HOM05D006718 ORTHO05D008492 9.6e-35 152.5 409 35.5
Aa31LG11G11170 Aethionema arabicum HOM05D006718 ORTHO05D008492 3.6e-34 150.6 516 31.6
Aqoxy1G00086 Aquilegia oxysepala HOM05D006718 ORTHO05D008492 3.6e-34 150.6 585 29.7
Sabra08G0007500 Salix brachista HOM05D006718 ORTHO05D008492 4.8e-34 150.2 512 32.4
Cc02_g32070 Coffea canephora HOM05D006718 ORTHO05D008492 3.1e-33 147.5 321 36.1
Migut.N01880 Erythranthe guttata HOM05D006718 ORTHO05D008492 5.3e-33 146.7 230 43.9
BolC9t58690H Brassica oleracea HOM05D006718 ORTHO05D008492 1.5e-32 145.2 412 32.3
ECA232G4797 Erigeron canadensis HOM05D006718 ORTHO05D008492 1.5e-32 145.2 406 32.8
BcaC04g18692 Brassica carinata HOM05D006718 ORTHO05D008492 3.4e-32 144.1 248 40.3
THA.LOC104811338 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 3.4e-32 144.1 438 32.2
C09p58250 Brassica napus HOM05D006718 ORTHO05D008492 5.8e-32 143.3 409 33.0
A10p21140 Brassica napus HOM05D006718 ORTHO05D008492 7.6e-32 142.9 403 34.7
unitig_899.g15585 Utricularia gibba HOM05D006718 ORTHO05D008492 9.9e-32 142.5 415 33.5
Potri.008G012250 Populus trichocarpa HOM05D006718 ORTHO05D008492 1.3e-31 142.1 379 35.9
HPP92_007508 Vanilla planifolia HOM05D006718 ORTHO05D008492 6.4e-31 139.8 567 28.9
HanXRQChr09g0250361 Helianthus annuus HOM05D006718 ORTHO05D008492 2.4e-30 137.9 497 31.2
Os01g0814000 Oryza sativa ssp. japonica HOM05D006718 ORTHO05D008492 1.6e-29 135.2 249 39.4
CARHR194580 Cardamine hirsuta HOM05D006718 ORTHO05D008492 6.0e-29 133.3 325 33.2
ATR0068G071 Amborella trichopoda HOM05D006718 ORTHO05D008492 2.5e-27 127.9 575 30.8
BraA10t44177Z Brassica rapa HOM05D006718 ORTHO05D008492 1.8e-25 121.7 402 32.3
Cpa.g.sc163.26 Carica papaya HOM05D006718 ORTHO05D008492 9.0e-25 119.4 216 40.7
Zm00001eb149940 Zea mays HOM05D006718 ORTHO05D008492 2.0e-24 118.2 250 34.8
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 1.4e-22 112.1 233 38.2
CDE04G2801 Ceratophyllum demersum HOM05D001339 ORTHO05D003609 4.8e-18 97.1 577 26.7
A02p04900 Brassica napus HOM05D006718 ORTHO05D008492 1.1e-11 75.9 380 27.4
Mapoly0025s0136 Marchantia polymorpha HOM05D006718 ORTHO05D008492 4.8e-10 70.5 387 25.3
CSS0030010 Camellia sinensis var. sinensis HOM05D006718 ORTHO05D008492 8.2e-10 69.7 300 31.7
Pp3c27_4140 Physcomitrium patens HOM05D006718 ORTHO05D008492 3.1e-09 67.8 76 44.7
Peaxi162Scf00558g00016 Petunia axillaris HOM05D006718 ORTHO05D008492 2.0e-08 65.1 185 30.3
AagrBONN_evm.TU.Sc2ySwM_344.1162 Anthoceros agrestis HOM05D006718 ORTHO05D008492 7.6e-08 63.2 261 23.8
BcaB05g23323 Brassica carinata HOM05D006718 ORTHO05D008492 1.3e-07 62.4 112 39.3


User provided reference genes

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