Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G2051 Fragaria x ananassa HOM05D001206 ORTHO05D209284 4.3e-130 468.0 239 100.0
FAN02G3214 Fragaria x ananassa HOM05D000107 ORTHO05D002484 1.1e-21 107.8 62 83.9
FvH4_4g16160 Fragaria vesca HOM05D001206 ORTHO05D005935 1.1e-16 91.3 67 70.1
FvH4_4g03380 Fragaria vesca HOM05D001206 ORTHO05D005935 1.5e-13 80.9 48 81.2
FvH4_6g33420 Fragaria vesca HOM05D001206 ORTHO05D005935 1.5e-13 80.9 48 81.2
FAN06G1107 Fragaria x ananassa HOM05D001206 ORTHO05D005935 1.9e-13 80.5 67 65.7
FvH4_6g37630 Fragaria vesca HOM05D001206 ORTHO05D005935 5.7e-13 79.0 48 81.2
FAN02G0831 Fragaria x ananassa HOM05D001206 ORTHO05D005935 5.7e-13 79.0 48 81.2
FAN14G2675 Fragaria x ananassa HOM05D001206 ORTHO05D005935 5.7e-13 79.0 48 81.2
MD09G1156700 Malus domestica HOM05D001206 ORTHO05D005935 5.7e-13 79.0 48 81.2
MD17G1143200 Malus domestica HOM05D001206 ORTHO05D005935 5.7e-13 79.0 48 81.2
RcHm_v2.0_Chr2g0150631 Rosa chinensis HOM05D001206 ORTHO05D005935 5.7e-13 79.0 48 81.2
FvH4_4g05790 Fragaria vesca HOM05D001206 ORTHO05D005935 7.4e-13 78.6 48 81.2
Prupe.3G169900 Prunus persica HOM05D001206 ORTHO05D005935 7.4e-13 78.6 48 81.2
FAN18G2655 Fragaria x ananassa HOM05D001206 ORTHO05D005935 9.7e-13 78.2 67 64.2
FvH4_5g31820 Fragaria vesca HOM05D001206 ORTHO05D005935 1.3e-12 77.8 67 64.2
FvH4_7g03390 Fragaria vesca HOM05D001206 ORTHO05D005935 8.2e-12 75.1 67 62.7
Haze_13462 Corylus avellana HOM05D001206 ORTHO05D005935 4.1e-11 72.8 48 75.0
Lalb_Chr15g0080441 Lupinus albus HOM05D001206 ORTHO05D005935 6.9e-11 72.0 48 68.8
MELO3C014457.2 Cucumis melo HOM05D001206 ORTHO05D005935 9.0e-11 71.6 48 70.8
Ah.01g016080 Amaranthus hybridus HOM05D001206 ORTHO05D005935 1.2e-10 71.2 46 69.6
AUR62004905 Chenopodium quinoa HOM05D001206 ORTHO05D005935 1.2e-10 71.2 46 71.7
Ca_14632_v3 Cicer arietinum L. HOM05D001206 ORTHO05D005935 1.2e-10 71.2 48 68.8
Ciclev10014821m.g Citrus clementina HOM05D001206 ORTHO05D005935 1.5e-10 70.9 103 43.7
Lj6g0018418 Lotus japonicus HOM05D001206 ORTHO05D005935 1.5e-10 70.9 48 68.8
CiPaw.03G196100 Carya illinoinensis HOM05D001206 ORTHO05D005935 2.0e-10 70.5 48 70.8
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 2.0e-10 70.5 48 68.8
Glyma.08G311400 Glycine max HOM05D001206 ORTHO05D005935 2.0e-10 70.5 46 67.4
Medtr3g048950 Medicago truncatula HOM05D001206 ORTHO05D005935 2.6e-10 70.1 48 66.7
QL08p043357 Quercus lobata HOM05D001206 ORTHO05D005935 3.4e-10 69.7 46 76.1
Sed0006625 Sechium edule HOM05D001206 ORTHO05D005935 3.4e-10 69.7 46 71.7
Hund07738 Selenicereus undatus HOM05D001206 ORTHO05D005935 3.4e-10 69.7 46 69.6
AUR62032754 Chenopodium quinoa HOM05D001206 ORTHO05D005935 4.5e-10 69.3 46 67.4
FAN25G3564 Fragaria x ananassa HOM05D001206 ORTHO05D005935 5.9e-10 68.9 48 72.9
EL10Ac9g21024 Beta vulgaris HOM05D001206 ORTHO05D005935 7.7e-10 68.6 46 69.6
arahy.Tifrunner.gnm1.ann1.BZT8G9 Arachis hypogaea HOM05D001206 ORTHO05D005935 1.0e-09 68.2 48 68.8
arahy.Tifrunner.gnm1.ann1.DXFN4R Arachis hypogaea HOM05D001206 ORTHO05D005935 1.0e-09 68.2 48 68.8
CSS0014076 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D005935 1.0e-09 68.2 48 66.7
CSS0050390 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D005935 1.0e-09 68.2 48 66.7
ClCG09G022260 Citrullus lanatus HOM05D001206 ORTHO05D005935 1.0e-09 68.2 104 44.2
Atru.chr6.3565 Acer truncatum HOM05D001206 ORTHO05D005935 1.3e-09 67.8 46 69.6
Psat5g186880 Pisum sativum HOM05D001206 ORTHO05D005935 1.3e-09 67.8 48 64.6
CANSAT64G1074 Cannabis sativa HOM05D001206 ORTHO05D005935 2.9e-09 66.6 46 69.6
Cpa.g.sc139.29 Carica papaya HOM05D001206 ORTHO05D005935 2.9e-09 66.6 46 67.4
Eucgr.K01190 Eucalyptus grandis HOM05D001206 ORTHO05D005935 2.9e-09 66.6 46 67.4
vmacro12422 Vaccinium macrocarpon HOM05D001206 ORTHO05D005935 2.9e-09 66.6 48 64.6
vmacro12423 Vaccinium macrocarpon HOM05D001206 ORTHO05D005935 2.9e-09 66.6 48 64.6
Phvul.006G036200 Phaseolus vulgaris HOM05D001206 ORTHO05D005935 5.0e-09 65.9 106 41.5
PGR142G3322 Punica granatum HOM05D001206 ORTHO05D005935 5.0e-09 65.9 46 67.4
Rhsim06G0124000 Rhododendron simsii HOM05D001206 ORTHO05D005935 5.0e-09 65.9 48 62.5
Sc21g0004390 Simmondsia chinensis HOM05D001206 ORTHO05D005935 5.0e-09 65.9 46 67.4
THA.LOC104824040 Tarenaya hassleriana HOM05D001206 ORTHO05D005935 5.0e-09 65.9 46 69.6
Actinidia12826 Actinidia chinensis HOM05D001206 ORTHO05D005935 6.5e-09 65.5 48 62.5
Gohir.A06G169500 Gossypium hirsutum HOM05D001206 ORTHO05D005935 8.5e-09 65.1 48 64.6
Gohir.D06G177200 Gossypium hirsutum HOM05D001206 ORTHO05D005935 8.5e-09 65.1 48 64.6
Gorai.N008100 Gossypium raimondii HOM05D001206 ORTHO05D005935 8.5e-09 65.1 48 64.6
Thecc.10G113900 Theobroma cacao HOM05D001206 ORTHO05D005935 8.5e-09 65.1 48 62.5
GSVIVG01020788001 Vitis vinifera HOM05D001206 ORTHO05D005935 8.5e-09 65.1 46 65.2
AT3G25660 Arabidopsis thaliana HOM05D001206 ORTHO05D005935 1.1e-08 64.7 46 69.6
CARHR260190 Cardamine hirsuta HOM05D001206 ORTHO05D005935 1.1e-08 64.7 46 65.2
CARHR288520 Cardamine hirsuta HOM05D001206 ORTHO05D005935 1.1e-08 64.7 46 65.2
Thhalv10012940m.g Eutrema salsugineum HOM05D001206 ORTHO05D005935 1.1e-08 64.7 46 69.6
Sp2g14920 Schrenkiella parvula HOM05D001206 ORTHO05D005935 1.1e-08 64.7 46 69.6
Carub.0005s0348 Capsella rubella HOM05D001206 ORTHO05D005935 1.4e-08 64.3 46 67.4
Lsat_1_v5_gn_8_31840 Lactuca sativa HOM05D001206 ORTHO05D005935 1.4e-08 64.3 48 60.4
BcaB07g30635 Brassica carinata HOM05D001206 ORTHO05D005935 1.9e-08 63.9 46 67.4
BcaC04g21423 Brassica carinata HOM05D001206 ORTHO05D005935 1.9e-08 63.9 46 67.4
A09p24920 Brassica napus HOM05D001206 ORTHO05D005935 1.9e-08 63.9 46 67.4
C09p31950 Brassica napus HOM05D001206 ORTHO05D005935 1.9e-08 63.9 46 67.4
BolC9t56049H Brassica oleracea HOM05D001206 ORTHO05D005935 1.9e-08 63.9 46 67.4
BraA09t38080Z Brassica rapa HOM05D001206 ORTHO05D005935 1.9e-08 63.9 46 67.4
Potri.018G086350 Populus trichocarpa HOM05D001206 ORTHO05D005935 1.9e-08 63.9 46 60.9
Sabra18G0074600 Salix brachista HOM05D003301 ORTHO05D003665 1.9e-08 63.9 46 60.9
AL5G14200 Arabidopsis lyrata HOM05D001206 ORTHO05D005935 2.5e-08 63.5 46 67.4
MBI05_g35447_MAGBIO Magnolia biondii HOM05D001206 ORTHO05D005935 2.5e-08 63.5 46 63.0
Aa31LG2G6650 Aethionema arabicum HOM05D001206 ORTHO05D005935 3.2e-08 63.2 46 67.4
Manes.01G129100 Manihot esculenta HOM05D001206 ORTHO05D005935 3.2e-08 63.2 46 65.2
THA.LOC104805240 Tarenaya hassleriana HOM05D001206 ORTHO05D005935 3.2e-08 63.2 46 67.4
AagrBONN_evm.TU.Sc2ySwM_368.1898 Anthoceros agrestis HOM05D001206 ORTHO05D005935 4.2e-08 62.8 46 56.5
MSTRG.12835 Avicennia marina HOM05D001206 ORTHO05D005935 4.2e-08 62.8 46 63.0
CBR_g12438 Chara braunii HOM05D001206 ORTHO05D005935 4.2e-08 62.8 46 60.9
Mapoly0029s0077 Marchantia polymorpha HOM05D001206 ORTHO05D005935 4.2e-08 62.8 48 58.3
SalBow7G4591 Salvia bowleyana HOM05D001206 ORTHO05D005935 5.5e-08 62.4 46 60.9
Dinv06275 Davidia involucrata HOM05D001206 ORTHO05D005935 7.2e-08 62.0 46 58.7
SMO118G0181 Selaginella moellendorffii HOM05D001206 ORTHO05D005935 7.2e-08 62.0 48 58.3
Migut.H02113 Erythranthe guttata HOM05D001206 ORTHO05D005935 9.4e-08 61.6 46 63.0
HanXRQChr13g0387351 Helianthus annuus HOM05D001206 ORTHO05D005935 9.4e-08 61.6 48 60.4
Hma1.2p1_0178F.1_g078230 Hydrangea macrophylla HOM05D001206 ORTHO05D005935 1.2e-07 61.2 46 58.7
Hma1.2p1_3358F.1_g335550 Hydrangea macrophylla HOM05D001206 ORTHO05D005935 1.2e-07 61.2 46 58.7
Nn6g34432 Nelumbo nucifera HOM05D001206 ORTHO05D005935 1.2e-07 61.2 46 63.0
CDE05G3011 Ceratophyllum demersum HOM05D001206 ORTHO05D005935 1.6e-07 60.8 106 38.7
Oeu032122.1 Olea europaea HOM05D001206 ORTHO05D005935 1.6e-07 60.8 46 60.9
PSO017G2524 Papaver somniferum HOM05D001206 ORTHO05D005935 1.6e-07 60.8 46 63.0
PSO478G1473 Papaver somniferum HOM05D001206 ORTHO05D005935 1.6e-07 60.8 46 63.0
SGA_v2.0_scaffold4G02113 Striga asiatica HOM05D001206 ORTHO05D005935 1.6e-07 60.8 46 58.7
TWI38G0487 Tripterygium wilfordii HOM05D001206 ORTHO05D005935 1.6e-07 60.8 46 60.9
Aqoxy3G00674 Aquilegia oxysepala HOM05D001206 ORTHO05D005935 2.7e-07 60.1 46 56.5
DCAR_013291 Daucus carota HOM05D001206 ORTHO05D005935 3.6e-07 59.7 46 60.9
FAN21G1587 Fragaria x ananassa HOM05D001206 ORTHO05D005935 4.6e-07 59.3 39 76.9
Os04g0643200 Oryza sativa ssp. japonica HOM05D001206 ORTHO05D005935 4.6e-07 59.3 46 58.7
Peaxi162Scf00035g03126 Petunia axillaris HOM05D001206 ORTHO05D005935 4.6e-07 59.3 46 60.9
unitig_22.g6850 Utricularia gibba HOM05D001206 ORTHO05D005935 4.6e-07 59.3 48 56.2
CDE05G0826 Ceratophyllum demersum HOM05D001206 ORTHO05D005935 6.1e-07 58.9 46 60.9
SEGI_06909 Sequoiadendron giganteum HOM05D001206 ORTHO05D005935 6.1e-07 58.9 48 54.2
Solyc10g007840.3 Solanum lycopersicum HOM05D001206 ORTHO05D005935 1.0e-06 58.2 46 56.5
Sopen10g003740 Solanum pennellii HOM05D001206 ORTHO05D005935 1.0e-06 58.2 46 56.5
PGSC0003DMG401021239 Solanum tuberosum HOM05D001206 ORTHO05D005935 1.0e-06 58.2 46 56.5
Zm00001eb068770 Zea mays HOM05D001206 ORTHO05D005935 1.0e-06 58.2 46 56.5
Pp3c27_1950 Physcomitrium patens HOM05D001206 ORTHO05D005935 1.8e-06 57.4 46 56.5
TAR629G1684 Trochodendron aralioides HOM05D001206 ORTHO05D005935 2.3e-06 57.0 46 60.9
ATR1096G083 Amborella trichopoda HOM05D001206 ORTHO05D005935 3.0e-06 56.6 46 52.2
Cfa026647 Carpinus fangiana HOM05D001206 ORTHO05D005935 3.9e-06 56.2 48 52.1
Glyma.18G104200 Glycine max HOM05D001206 ORTHO05D005935 6.7e-06 55.5 38 63.2
Pp3c16_16670 Physcomitrium patens HOM05D001206 ORTHO05D005935 6.7e-06 55.5 46 54.3


User provided reference genes

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