Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1940.6 964 100.0
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1851.6 1037 90.5
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 0.0e+00 1837.8 1055 89.1
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1798.9 1037 88.4
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1742.6 1057 83.9
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 0.0e+00 1535.4 1030 75.2
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 0.0e+00 1526.1 1050 73.6
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 0.0e+00 1390.6 1048 66.1
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 0.0e+00 1367.8 1053 65.4
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 0.0e+00 1365.1 1084 64.5
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 0.0e+00 1360.1 1059 65.2
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 0.0e+00 1337.0 1046 64.7
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 0.0e+00 1334.3 1050 64.5
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 0.0e+00 1332.0 1051 63.4
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 0.0e+00 1331.6 1046 63.8
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 0.0e+00 1324.7 1046 63.3
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 0.0e+00 1318.1 1051 61.8
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 0.0e+00 1305.8 1045 62.0
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1296.6 1053 61.7
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 0.0e+00 1296.6 1053 61.9
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 0.0e+00 1295.4 1055 61.1
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 0.0e+00 1290.4 1046 62.3
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1285.0 1049 61.2
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 0.0e+00 1281.2 1050 61.4
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1280.0 1044 61.3
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 0.0e+00 1276.5 1057 61.5
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1274.2 1058 61.0
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 0.0e+00 1272.7 1048 61.0
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 0.0e+00 1272.7 1049 61.6
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1270.4 1052 60.5
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 0.0e+00 1267.3 1022 62.5
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1264.2 1056 60.1
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 0.0e+00 1261.1 1061 60.7
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1259.6 1048 61.2
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1257.7 1048 60.9
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1256.9 1045 60.8
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 0.0e+00 1251.1 1069 60.8
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 0.0e+00 1250.3 1050 60.6
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1249.2 1051 60.5
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 0.0e+00 1247.3 1055 60.4
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1245.0 1060 60.3
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 0.0e+00 1244.2 1067 59.0
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 0.0e+00 1244.2 1048 60.3
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 0.0e+00 1243.8 1051 59.7
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 0.0e+00 1243.8 1050 59.7
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 0.0e+00 1238.4 989 63.4
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 0.0e+00 1229.5 1042 59.3
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 0.0e+00 1220.7 1162 55.2
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 0.0e+00 1219.9 1054 58.8
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 0.0e+00 1218.8 1054 58.8
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 0.0e+00 1213.4 1067 57.9
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 0.0e+00 1211.1 1054 58.8
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 0.0e+00 1199.1 1057 57.7
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 0.0e+00 1194.5 1047 57.8
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 0.0e+00 1187.6 1054 57.9
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 0.0e+00 1187.6 1100 54.9
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1185.6 1057 56.6
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 0.0e+00 1184.1 1055 57.4
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 0.0e+00 1183.7 1049 58.0
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1182.5 1055 57.4
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 0.0e+00 1181.4 1053 55.7
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1176.4 1055 57.2
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1176.4 1057 56.1
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 0.0e+00 1176.0 1055 57.0
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 0.0e+00 1174.1 1090 56.3
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 0.0e+00 1169.5 1061 56.9
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 0.0e+00 1169.1 1056 56.9
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1167.1 1018 58.1
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1166.8 1049 56.4
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 0.0e+00 1164.8 1049 56.1
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 0.0e+00 1161.7 1053 55.2
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 0.0e+00 1159.1 1094 55.6
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1151.7 1076 55.8
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1147.5 1082 54.6
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 0.0e+00 1142.5 1054 54.3
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 0.0e+00 1113.6 1132 51.1
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 0.0e+00 1104.4 1055 53.9
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 0.0e+00 1098.6 1051 54.6
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 0.0e+00 1089.3 1045 53.9
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 0.0e+00 1088.9 1045 53.9
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 0.0e+00 1085.1 1035 54.5
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1078.9 1055 53.2
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 0.0e+00 1077.8 1037 53.3
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 2.0e-306 1055.8 1172 49.8
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 2.6e-306 1055.4 1042 53.3
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 1.7e-294 1016.1 1050 50.2
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 1.7e-294 1016.1 1128 49.0
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 6.5e-294 1014.2 1058 50.6
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 8.5e-294 1013.8 854 60.4
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 1.5e-290 1003.0 989 53.3
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 1.5e-274 949.9 1039 49.3
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 1.7e-262 909.8 873 53.4
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 5.8e-258 894.8 681 64.3
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 2.4e-251 872.8 900 51.8
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 5.8e-250 868.2 866 53.7
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 9.3e-248 860.9 524 81.5
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 1.3e-246 857.1 1023 45.2
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 4.8e-228 795.4 992 45.3
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 1.5e-221 773.9 725 54.1
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 9.3e-216 754.6 1066 40.8
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 3.7e-212 742.7 694 54.0
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 1.8e-198 697.2 386 89.6
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 1.6e-191 674.1 701 48.9
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 7.7e-178 628.6 486 63.6
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 1.9e-176 624.0 790 45.6
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 5.5e-176 622.5 721 47.6
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 3.0e-166 590.1 951 38.6
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 1.4e-163 581.3 845 40.0
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 4.1e-163 579.7 657 47.5
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 3.9e-161 573.2 431 64.7
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 1.2e-159 568.2 510 55.7
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 3.0e-153 547.0 1030 35.8
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 4.0e-150 536.6 797 39.5
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 2.9e-148 530.4 507 53.6
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 8.1e-143 512.3 595 46.1
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.9e-131 474.6 342 66.4
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 2.5e-128 464.2 506 48.8
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 6.9e-94 349.7 856 30.1
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 4.1e-86 323.9 341 51.9
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 1.2e-82 312.4 451 39.2
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 9.1e-78 296.2 263 58.2
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 1.6e-77 295.4 238 63.4
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 9.4e-75 286.2 211 64.5
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 1.4e-70 272.3 177 73.4
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 3.5e-69 267.7 1152 24.6
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 1.1e-67 262.7 296 49.7
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 1.8e-65 255.4 390 41.3
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 8.3e-63 246.5 223 54.3
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 3.5e-61 241.1 270 50.0
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 2.2e-55 221.9 127 85.0
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 5.4e-54 217.2 960 24.9
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 9.2e-54 216.5 331 40.5
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 4.5e-53 214.2 242 50.0
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 1.0e-52 213.0 204 50.5
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 2.5e-51 208.4 154 61.7
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 3.4e-48 198.0 291 40.5
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 1.6e-45 189.1 208 49.5
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 3.3e-43 181.4 166 60.2
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 3.6e-42 177.9 1041 24.1
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 1.0e-36 159.8 193 46.1
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 3.4e-32 144.8 103 68.9
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 1.1e-30 139.8 319 31.0
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 3.5e-29 134.8 113 63.7
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 3.5e-29 134.8 86 73.3
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 1.7e-28 132.5 159 47.8
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 2.4e-25 122.1 106 61.3
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 2.6e-24 118.6 67 77.6
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 2.9e-23 115.2 103 55.3
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 5.4e-22 110.9 147 44.9
Lj1g0009863 Lotus japonicus HOM05D004733 ORTHO05D001264 1.1e-17 96.7 70 67.1
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 1.3e-15 89.7 70 57.1
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 3.5e-13 81.6 104 41.3
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 6.0e-13 80.9 74 44.6
Phvul.011G118830 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 1.1e-11 76.6 108 39.8
Psat2g060920 Pisum sativum HOM05D001085 ORTHO05D000895 5.6e-11 74.3 45 77.8
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 4.0e-09 68.2 77 46.8
Psat0s2980g0040 Pisum sativum HOM05D000709 ORTHO05D002401 2.0e-08 65.9 77 53.2


User provided reference genes

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