Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 3.4e-186 655.2 419 100.0
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 8.2e-76 288.5 247 99.2
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 8.2e-76 288.5 247 99.2
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 2.4e-75 287.0 247 98.4
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.5e-72 277.7 247 97.6
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 8.0e-63 245.4 251 92.0
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 6.1e-55 219.2 235 88.1
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 1.2e-53 214.9 238 85.7
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 2.9e-52 210.3 233 85.8
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 8.3e-52 208.8 227 89.4
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 6.0e-50 202.6 228 86.8
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.3e-49 201.4 227 88.5
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.3e-49 201.4 227 88.5
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 1.7e-49 201.1 215 90.2
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.7e-49 201.1 227 88.1
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 2.3e-49 200.7 226 88.1
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 1.1e-48 198.4 214 89.3
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 1.5e-48 198.0 227 86.3
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 1.9e-48 197.6 226 85.8
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 1.9e-48 197.6 214 92.1
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 1.9e-48 197.6 226 86.7
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 3.3e-48 196.8 226 86.7
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 3.3e-48 196.8 226 87.2
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 3.3e-48 196.8 226 87.2
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 4.3e-48 196.4 226 87.2
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 4.3e-48 196.4 226 87.2
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 5.6e-48 196.1 226 85.8
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 7.3e-48 195.7 214 90.2
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 1.2e-47 194.9 226 87.6
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 2.1e-47 194.1 226 85.4
FAN16G1197 Fragaria x ananassa HOM05D014265 ORTHO05D200988 2.8e-47 193.7 96 95.8
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 3.6e-47 193.4 227 86.3
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 4.7e-47 193.0 214 89.3
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 4.7e-47 193.0 226 85.4
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 4.7e-47 193.0 157 65.0
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 4.7e-47 193.0 226 85.4
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 6.2e-47 192.6 212 90.6
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 8.0e-47 192.2 227 86.3
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 8.0e-47 192.2 215 86.0
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 8.0e-47 192.2 226 85.8
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 1.1e-46 191.8 233 82.4
FAN05G0914 Fragaria x ananassa HOM05D014265 ORTHO05D207664 1.1e-46 191.8 96 94.8
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 1.1e-46 191.8 223 85.7
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 1.4e-46 191.4 214 88.3
FAN09G3388 Fragaria x ananassa HOM05D014265 ORTHO05D209957 1.4e-46 191.4 92 96.7
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 1.4e-46 191.4 227 84.6
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 2.3e-46 190.7 96 93.8
FAN07G1598 Fragaria x ananassa HOM05D000516 ORTHO05D000409 2.3e-46 190.7 96 93.8
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 2.3e-46 190.7 224 85.7
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 2.3e-46 190.7 224 85.7
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 2.3e-46 190.7 226 83.6
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 3.1e-46 190.3 227 74.9
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 4.0e-46 189.9 231 83.5
FAN04G2442 Fragaria x ananassa HOM05D014265 ORTHO05D208831 5.2e-46 189.5 96 93.8
FAN09G3919 Fragaria x ananassa HOM05D014265 ORTHO05D204656 5.2e-46 189.5 140 68.6
FAN17G0967 Fragaria x ananassa HOM05D014265 ORTHO05D207914 6.8e-46 189.1 96 93.8
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 8.9e-46 188.7 227 84.6
FAN02G4049 Fragaria x ananassa HOM05D000056 ORTHO05D000019 1.2e-45 188.3 98 91.8
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 1.2e-45 188.3 224 85.3
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 1.5e-45 188.0 226 84.1
FAN16G0211 Fragaria x ananassa HOM05D014265 ORTHO05D206729 1.5e-45 188.0 91 97.8
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 2.0e-45 187.6 224 78.6
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 2.0e-45 187.6 210 88.6
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 2.6e-45 187.2 226 82.3
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 2.6e-45 187.2 226 82.3
FAN05G2275 Fragaria x ananassa HOM05D000600 ORTHO05D000432 2.6e-45 187.2 96 91.7
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 2.6e-45 187.2 224 84.8
FAN04G1463 Fragaria x ananassa HOM05D000164 ORTHO05D000096 3.4e-45 186.8 96 91.7
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 3.4e-45 186.8 224 84.8
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 7.5e-45 185.7 224 80.8
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 9.8e-45 185.3 227 84.6
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.9e-44 183.7 227 84.1
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 2.9e-44 183.7 228 84.6
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 2.9e-44 183.7 227 83.3
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 2.4e-43 180.6 214 85.0
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 2.4e-43 180.6 242 79.3
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 3.2e-43 180.3 226 82.3
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 4.1e-43 179.9 227 82.4
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 4.1e-43 179.9 227 82.4
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 5.4e-43 179.5 223 82.5
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 1.2e-42 178.3 212 86.8
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 2.7e-42 177.2 224 79.0
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 4.6e-42 176.4 234 79.5
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 1.0e-41 175.3 233 79.0
FAN13G3275 Fragaria x ananassa HOM05D014265 ORTHO05D205638 1.7e-41 174.5 85 96.5
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 2.3e-41 174.1 227 80.2
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 3.9e-41 173.3 226 77.9
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 5.0e-41 172.9 243 77.0
FAN22G2037 Fragaria x ananassa HOM05D000584 ORTHO05D000458 5.0e-41 172.9 87 94.3
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 8.6e-41 172.2 224 80.4
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 8.6e-41 172.2 226 79.6
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 1.1e-40 171.8 231 79.7
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 1.1e-40 171.8 229 79.5
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 1.1e-40 171.8 205 87.3
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 1.1e-40 171.8 240 78.3
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 1.5e-40 171.4 226 77.4
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 1.5e-40 171.4 226 77.4
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 1.5e-40 171.4 224 80.8
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 1.9e-40 171.0 230 80.0
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 2.5e-40 170.6 226 80.5
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 2.5e-40 170.6 214 82.7
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 3.3e-40 170.2 240 77.9
FAN16G3156 Fragaria x ananassa HOM05D000386 ORTHO05D000406 4.3e-40 169.9 81 97.5
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 4.3e-40 169.9 213 85.0
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 5.6e-40 169.5 235 77.9
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 9.5e-40 168.7 226 80.5
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 9.5e-40 168.7 226 80.5
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 1.2e-39 168.3 230 79.6
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 1.2e-39 168.3 215 82.8
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 1.2e-39 168.3 226 81.0
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 1.2e-39 168.3 224 80.4
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 1.2e-39 168.3 226 79.6
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 1.6e-39 167.9 229 80.3
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 1.6e-39 167.9 236 50.4
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 2.1e-39 167.5 244 75.8
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 2.1e-39 167.5 229 79.9
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 4.7e-39 166.4 226 80.1
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 4.7e-39 166.4 229 79.9
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 4.7e-39 166.4 229 79.9
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 4.7e-39 166.4 229 79.9
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 4.7e-39 166.4 226 80.1
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 4.7e-39 166.4 229 79.9
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 6.2e-39 166.0 234 76.1
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 1.1e-38 165.2 226 80.1
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 1.1e-38 165.2 230 78.3
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 1.1e-38 165.2 212 85.4
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 1.4e-38 164.9 226 79.6
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 1.4e-38 164.9 233 76.8
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 1.8e-38 164.5 217 82.0
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 1.8e-38 164.5 212 83.0
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 2.3e-38 164.1 237 76.8
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 2.3e-38 164.1 226 73.5
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 3.1e-38 163.7 237 76.8
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 3.1e-38 163.7 232 76.3
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 3.1e-38 163.7 226 79.2
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 4.0e-38 163.3 212 83.0
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 5.2e-38 162.9 226 79.2
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 1.2e-37 161.8 230 77.4
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 1.5e-37 161.4 227 78.0
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 1.3e-36 158.3 224 79.0
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 1.7e-36 157.9 226 77.9
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 3.7e-36 156.8 191 91.1
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 1.9e-35 154.5 197 87.3
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 3.2e-35 153.7 211 82.5
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 5.4e-35 152.9 227 76.7
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 6.0e-34 149.4 203 83.7
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 6.0e-34 149.4 230 72.2
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 6.0e-34 149.4 94 76.6
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 7.8e-34 149.1 234 75.6
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 2.3e-33 147.5 231 74.9
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 1.5e-32 144.8 226 59.7
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 1.5e-32 144.8 212 78.8
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 4.3e-32 143.3 227 74.9
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 4.3e-32 143.3 221 74.7
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 5.6e-32 142.9 225 77.8
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 1.6e-31 141.4 221 73.8
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 4.7e-31 139.8 237 39.2
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 1.8e-30 137.9 221 70.6
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 6.8e-30 136.0 212 78.8
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 4.4e-29 133.3 93 69.9
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 5.8e-29 132.9 212 75.0
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 4.9e-28 129.8 211 68.2
FAN01G2834 Fragaria x ananassa HOM05D000031 ORTHO05D200814 3.9e-25 120.2 57 94.7
FAN10G4287 Fragaria x ananassa HOM05D000031 ORTHO05D206501 3.9e-25 120.2 57 94.7
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 8.1e-23 112.5 80 65.0
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 9.0e-14 82.4 46 82.6
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 9.0e-14 82.4 230 54.8
BcaB07g33501 Brassica carinata HOM05D014265 ORTHO05D095472 2.0e-13 81.3 61 67.2
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 5.8e-13 79.7 45 82.2
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 6.4e-12 76.3 45 77.8
FAN08G1580 Fragaria x ananassa HOM05D000132 ORTHO05D000058 1.1e-11 75.5 35 97.1
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 1.6e-10 71.6 232 63.4
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 2.7e-10 70.9 45 73.3
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 5.1e-09 66.6 219 64.8
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 1.9e-08 64.7 47 72.3
AUR62008062 Chenopodium quinoa HOM05D000094 ORTHO05D001056 2.8e-07 60.8 116 37.9
ATR0730G160 Amborella trichopoda HOM05D004527 ORTHO05D005335 1.4e-06 58.5 50 54.0
TPR.G15150 Trifolium pratense HOM05D000094 ORTHO05D001056 3.1e-06 57.4 80 40.0
Medtr4g092530 Medicago truncatula HOM05D000094 ORTHO05D001056 4.0e-06 57.0 85 38.8
arahy.Tifrunner.gnm1.ann1.VYJ8LR Arachis hypogaea HOM05D000094 ORTHO05D001056 5.3e-06 56.6 93 32.3
AUR62028640 Chenopodium quinoa HOM05D000094 ORTHO05D001056 5.3e-06 56.6 112 36.6
PGSC0003DMG400022632 Solanum tuberosum HOM05D000094 ORTHO05D002904 9.0e-06 55.8 97 38.1
VMungo0331G1233 Vigna mungo HOM05D000094 ORTHO05D001056 9.0e-06 55.8 102 34.3


User provided reference genes

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