Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G1979 Fragaria x ananassa HOM05D005038 ORTHO05D006055 3.4e-155 551.6 276 100.0
FAN28G2421 Fragaria x ananassa HOM05D005038 ORTHO05D006055 3.6e-152 541.6 275 98.2
FAN23G2750 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.8e-151 539.3 275 97.8
FAN26G2456 Fragaria x ananassa HOM05D005038 ORTHO05D006055 4.4e-150 534.6 276 97.1
FvH4_1g15680 Fragaria vesca HOM05D005038 ORTHO05D006055 6.5e-138 494.2 276 91.3
FAN19G2696 Fragaria x ananassa HOM05D005038 ORTHO05D006055 2.1e-136 489.2 276 90.2
RcHm_v2.0_Chr2g0104991 Rosa chinensis HOM05D005038 ORTHO05D006055 2.6e-126 455.7 276 86.2
Prupe.7G136500 Prunus persica HOM05D005038 ORTHO05D006055 5.0e-114 414.8 277 77.6
Haze_15429 Corylus avellana HOM05D005038 ORTHO05D006055 2.8e-112 409.1 268 75.7
MD02G1168700 Malus domestica HOM05D005038 ORTHO05D006055 6.8e-111 404.4 280 75.7
PGR102G3322 Punica granatum HOM05D005038 ORTHO05D006055 7.5e-110 401.0 278 73.4
CiPaw.01G021700 Carya illinoinensis HOM05D005038 ORTHO05D006055 1.7e-109 399.8 280 73.6
Glyma.17G176200 Glycine max HOM05D005038 ORTHO05D006055 1.7e-109 399.8 272 73.9
Nitab4.5_0000310g0200 Nicotiana tabacum HOM05D005038 ORTHO05D006055 2.2e-109 399.4 278 74.1
Duzib147G1247 Durio zibethinus HOM05D005038 ORTHO05D006055 1.4e-108 396.7 281 73.3
Lalb_Chr05g0226661 Lupinus albus HOM05D005038 ORTHO05D006055 1.4e-108 396.7 266 76.3
VMungo0251G1314 Vigna mungo HOM05D005038 ORTHO05D006055 1.4e-108 396.7 273 73.3
Nn5g30191 Nelumbo nucifera HOM05D005038 ORTHO05D006055 7.0e-108 394.4 269 73.2
Duzib264G0221 Durio zibethinus HOM05D005038 ORTHO05D006055 1.2e-107 393.7 282 73.0
Glyma.05G090600 Glycine max HOM05D005038 ORTHO05D006055 1.2e-107 393.7 276 71.4
COL.COLO4_11379 Corchorus olitorius HOM05D005038 ORTHO05D006055 4.6e-107 391.7 273 73.3
Manes.13G126100 Manihot esculenta HOM05D005038 ORTHO05D006055 1.3e-106 390.2 279 72.0
arahy.Tifrunner.gnm1.ann1.MSK3BR Arachis hypogaea HOM05D005038 ORTHO05D006055 2.3e-106 389.4 292 70.9
TAR628G1256 Trochodendron aralioides HOM05D005038 ORTHO05D006055 2.3e-106 389.4 268 74.3
TWI09G0447 Tripterygium wilfordii HOM05D005038 ORTHO05D006055 3.0e-106 389.0 281 71.9
CAN.G165.30 Capsicum annuum HOM05D005038 ORTHO05D006055 3.9e-106 388.7 276 72.5
CANSAT01G0585 Cannabis sativa HOM05D005038 ORTHO05D006055 5.0e-106 388.3 282 72.3
Gohir.A11G190200 Gossypium hirsutum HOM05D005038 ORTHO05D006055 5.0e-106 388.3 278 72.3
Solyc02g090540.4 Solanum lycopersicum HOM05D005038 ORTHO05D006055 5.0e-106 388.3 267 74.2
Aqoxy5G01298 Aquilegia oxysepala HOM05D005038 ORTHO05D006055 8.6e-106 387.5 268 74.3
QL06p042351 Quercus lobata HOM05D005038 ORTHO05D006055 8.6e-106 387.5 270 74.4
Sopen02g035200 Solanum pennellii HOM05D005038 ORTHO05D006055 8.6e-106 387.5 267 73.8
Thecc.01G052200 Theobroma cacao HOM05D005038 ORTHO05D006055 8.6e-106 387.5 274 72.6
MELO3C007547.2 Cucumis melo HOM05D005038 ORTHO05D006055 1.5e-105 386.7 290 70.0
CsaV3_6G043110 Cucumis sativus L. HOM05D005038 ORTHO05D006055 5.6e-105 384.8 290 69.3
Gohir.D11G196900 Gossypium hirsutum HOM05D005038 ORTHO05D006055 7.3e-105 384.4 276 71.4
ClCG01G016690 Citrullus lanatus HOM05D005038 ORTHO05D006055 9.5e-105 384.0 289 69.6
CiPaw.02G009600 Carya illinoinensis HOM05D005038 ORTHO05D006055 1.2e-104 383.6 274 71.5
Gorai.007G210800 Gossypium raimondii HOM05D005038 ORTHO05D006055 1.6e-104 383.3 276 71.4
arahy.Tifrunner.gnm1.ann1.S4TQX4 Arachis hypogaea HOM05D005038 ORTHO05D006055 2.1e-104 382.9 283 71.7
Ciclev10026264m.g Citrus clementina HOM05D005038 ORTHO05D006055 6.2e-104 381.3 281 69.8
Oeu021840.1 Olea europaea HOM05D005038 ORTHO05D006055 6.2e-104 381.3 281 71.9
Sabra05G0108900 Salix brachista HOM05D005038 ORTHO05D006055 8.0e-104 380.9 281 71.5
PGSC0003DMG400010021 Solanum tuberosum HOM05D005038 ORTHO05D006055 8.0e-104 380.9 277 71.1
CSS0005034 Camellia sinensis var. sinensis HOM05D005038 ORTHO05D006055 1.1e-103 380.6 282 70.6
Potri.005G136200 Populus trichocarpa HOM05D005038 ORTHO05D006055 1.4e-103 380.2 276 71.4
Peaxi162Scf00049g00149 Petunia axillaris HOM05D005038 ORTHO05D006055 1.8e-103 379.8 278 70.9
Atru.chr3.399 Acer truncatum HOM05D005038 ORTHO05D006055 2.3e-103 379.4 280 70.4
Lsat_1_v5_gn_2_84360 Lactuca sativa HOM05D005038 ORTHO05D006055 2.3e-103 379.4 277 70.8
MSTRG.23767 Avicennia marina HOM05D005038 ORTHO05D006055 6.8e-103 377.9 281 68.3
Sopen02g015220 Solanum pennellii HOM05D005038 ORTHO05D006055 6.8e-103 377.9 277 71.1
Hma1.2p1_0047F.1_g027670 Hydrangea macrophylla HOM05D005038 ORTHO05D006055 1.2e-102 377.1 273 72.2
Migut.H00455 Erythranthe guttata HOM05D005038 ORTHO05D006055 1.5e-102 376.7 283 68.9
Solyc02g065060.3 Solanum lycopersicum HOM05D005038 ORTHO05D006055 1.5e-102 376.7 277 71.1
Cc07_g05830 Coffea canephora HOM05D005038 ORTHO05D006055 4.4e-102 375.2 281 68.3
ECA238G0061 Erigeron canadensis HOM05D005038 ORTHO05D006055 4.4e-102 375.2 277 69.0
Sed0007672 Sechium edule HOM05D005038 ORTHO05D006055 4.4e-102 375.2 286 66.8
Eucgr.H01997 Eucalyptus grandis HOM05D005038 ORTHO05D006055 5.8e-102 374.8 299 65.2
CAN.G836.64 Capsicum annuum HOM05D005038 ORTHO05D006055 1.3e-101 373.6 269 71.4
Cpa.g.sc6.381 Carica papaya HOM05D005038 ORTHO05D006055 1.7e-101 373.2 277 69.7
Nitab4.5_0000728g0080 Nicotiana tabacum HOM05D005038 ORTHO05D006055 3.7e-101 372.1 276 69.9
PGSC0003DMG400000767 Solanum tuberosum HOM05D005038 ORTHO05D006055 4.9e-101 371.7 273 70.3
Gorai.011G105100 Gossypium raimondii HOM05D005038 ORTHO05D006055 1.4e-100 370.2 273 71.1
CSS0034792 Camellia sinensis var. sinensis HOM05D005038 ORTHO05D006055 2.4e-100 369.4 269 72.9
Gohir.A10G092400 Gossypium hirsutum HOM05D005038 ORTHO05D006055 5.4e-100 368.2 273 70.7
HanXRQChr03g0061121 Helianthus annuus HOM05D005038 ORTHO05D006055 7.0e-100 367.9 277 67.1
Rhsim08G0102300 Rhododendron simsii HOM05D005038 ORTHO05D006055 1.6e-99 366.7 282 70.6
Psat4g087880 Pisum sativum HOM05D005038 ORTHO05D006055 4.6e-99 365.2 268 69.8
HanXRQChr14g0448271 Helianthus annuus HOM05D005038 ORTHO05D006055 1.3e-98 363.6 277 70.0
Gohir.D10G095800 Gossypium hirsutum HOM05D005038 ORTHO05D006055 2.3e-98 362.8 277 69.0
Potri.007G040900 Populus trichocarpa HOM05D005038 ORTHO05D006055 2.3e-98 362.8 285 69.8
Nn1g05863 Nelumbo nucifera HOM05D005038 ORTHO05D006055 3.9e-98 362.1 259 69.1
Lj4g0011946 Lotus japonicus HOM05D005038 ORTHO05D006055 8.6e-98 360.9 270 70.0
Hund16340 Selenicereus undatus HOM05D005038 ORTHO05D006055 1.1e-97 360.5 272 69.9
Medtr8g079810 Medicago truncatula HOM05D005038 ORTHO05D006055 7.3e-97 357.8 262 70.6
Hund13568 Selenicereus undatus HOM05D005038 ORTHO05D006055 2.8e-96 355.9 266 69.5
PSO170G1702 Papaver somniferum HOM05D005038 ORTHO05D006055 1.1e-95 354.0 297 65.3
TAR376G0303 Trochodendron aralioides HOM05D005038 ORTHO05D006055 6.8e-95 351.3 270 68.1
THA.LOC104821271 Tarenaya hassleriana HOM05D005038 ORTHO05D006055 1.5e-94 350.1 280 65.4
Lalb_Chr16g0378421 Lupinus albus HOM05D005038 ORTHO05D006055 2.6e-94 349.4 273 67.4
Peaxi162Scf00916g00134 Petunia axillaris HOM05D005038 ORTHO05D006055 7.5e-94 347.8 268 69.0
Sabra07G0036600 Salix brachista HOM05D005038 ORTHO05D006055 1.7e-93 346.7 293 66.2
Glyma.11G057800 Glycine max HOM05D005038 ORTHO05D006055 3.7e-93 345.5 273 67.8
Lj2g0014661 Lotus japonicus HOM05D005038 ORTHO05D006055 8.3e-93 344.4 273 67.4
THA.LOC104827003 Tarenaya hassleriana HOM05D005038 ORTHO05D006055 1.9e-92 343.2 281 62.3
TPR.G19012 Trifolium pratense HOM05D005038 ORTHO05D006055 1.9e-92 343.2 246 70.3
AT3G50560 Arabidopsis thaliana HOM05D005038 ORTHO05D006055 2.4e-92 342.8 285 61.8
VMungo1215G2888 Vigna mungo HOM05D005038 ORTHO05D006055 4.1e-92 342.0 277 65.7
BcaB01g00609 Brassica carinata HOM05D005038 ORTHO05D006055 9.2e-92 340.9 285 62.1
Lj4A139T89 Lonicera japonica HOM05D005038 ORTHO05D006055 1.6e-91 340.1 295 65.4
Lj7C62T0 Lonicera japonica HOM05D005038 ORTHO05D006055 1.6e-91 340.1 282 64.9
BcaB05g23223 Brassica carinata HOM05D005038 ORTHO05D006055 2.1e-91 339.7 285 61.1
AL5G30700 Arabidopsis lyrata HOM05D005038 ORTHO05D006055 2.7e-91 339.3 284 61.3
Thhalv10010624m.g Eutrema salsugineum HOM05D005038 ORTHO05D006055 2.7e-91 339.3 285 61.1
Phvul.002G020600 Phaseolus vulgaris HOM05D005038 ORTHO05D006055 2.7e-91 339.3 269 66.5
Sp5g11650 Schrenkiella parvula HOM05D005038 ORTHO05D006055 3.5e-91 339.0 285 61.4
BcaC09g50037 Brassica carinata HOM05D005038 ORTHO05D006055 1.0e-90 337.4 285 61.1
A01p24040 Brassica napus HOM05D005038 ORTHO05D006055 1.0e-90 337.4 285 61.1
C01p29730 Brassica napus HOM05D005038 ORTHO05D006055 1.0e-90 337.4 285 61.1
BolC1t02913H Brassica oleracea HOM05D005038 ORTHO05D006055 1.0e-90 337.4 285 61.1
BolC8t50181H Brassica oleracea HOM05D005038 ORTHO05D006055 1.3e-90 337.0 285 60.4
BraA01t02316Z Brassica rapa HOM05D005038 ORTHO05D006055 1.3e-90 337.0 285 61.1
BcaC07g39516 Brassica carinata HOM05D005038 ORTHO05D006055 1.7e-90 336.7 285 60.0
Carub.0005s1688 Capsella rubella HOM05D005038 ORTHO05D006055 2.3e-90 336.3 287 60.6
A09p43580 Brassica napus HOM05D005038 ORTHO05D006055 3.0e-90 335.9 285 60.0
C08p25620 Brassica napus HOM05D005038 ORTHO05D006055 6.6e-90 334.7 285 60.0
PSO017G3935 Papaver somniferum HOM05D005038 ORTHO05D006055 6.6e-90 334.7 296 62.2
Dinv39876 Davidia involucrata HOM05D005038 ORTHO05D006055 9.5e-89 330.9 218 78.9
Nitab4.5_0000440g0200 Nicotiana tabacum HOM05D005038 ORTHO05D006055 9.5e-89 330.9 217 77.4
AUR62003853 Chenopodium quinoa HOM05D005038 ORTHO05D006055 1.6e-88 330.1 280 61.8
SEGI_27725 Sequoiadendron giganteum HOM05D005038 ORTHO05D006055 3.6e-88 328.9 257 61.9
Aa31LG4G18730 Aethionema arabicum HOM05D005038 ORTHO05D006055 6.8e-87 324.7 281 60.9
PSO732G0767 Papaver somniferum HOM05D005038 ORTHO05D006055 1.2e-86 323.9 294 60.5
vmacro17934 Vaccinium macrocarpon HOM05D005038 ORTHO05D006055 2.6e-86 322.8 236 69.5
PSO675G5181 Papaver somniferum HOM05D005038 ORTHO05D006055 5.8e-86 321.6 293 59.7
PSO675G4848 Papaver somniferum HOM05D005038 ORTHO05D006055 1.1e-84 317.4 297 60.3
CDE03G0279 Ceratophyllum demersum HOM05D005038 ORTHO05D006055 4.1e-84 315.5 268 60.1
ATR0097G001 Amborella trichopoda HOM05D005038 ORTHO05D006055 5.4e-84 315.1 269 61.3
GSVIVG01006576001 Vitis vinifera HOM05D005038 ORTHO05D006055 7.1e-84 314.7 253 68.0
PSO675G1229 Papaver somniferum HOM05D005038 ORTHO05D006055 9.2e-84 314.3 289 59.2
PSO541G2053 Papaver somniferum HOM05D005038 ORTHO05D006055 2.7e-83 312.8 297 58.9
Actinidia16508 Actinidia chinensis HOM05D005038 ORTHO05D006055 6.0e-83 311.6 294 61.6
Os08g0476300 Oryza sativa ssp. japonica HOM05D005038 ORTHO05D006055 1.1e-81 307.4 278 57.9
Lj7C59T8 Lonicera japonica HOM05D005038 ORTHO05D006055 1.8e-79 300.1 287 59.2
EL10Ac6g15150 Beta vulgaris HOM05D005038 ORTHO05D006055 2.9e-77 292.7 274 57.3
BraA09t39820Z Brassica rapa HOM05D005038 ORTHO05D006055 4.9e-77 292.0 222 65.8
CARHR160070 Cardamine hirsuta HOM05D005038 ORTHO05D006055 4.9e-77 292.0 216 69.0
Nitab4.5_0013126g0010 Nicotiana tabacum HOM05D005038 ORTHO05D006055 1.5e-73 280.4 164 84.8
Phvul.003G245900 Phaseolus vulgaris HOM05D005038 ORTHO05D006055 1.3e-72 277.3 166 84.3
Mapoly0021s0094 Marchantia polymorpha HOM05D005038 ORTHO05D006055 3.8e-69 265.8 259 53.3
SMO364G0608 Selaginella moellendorffii HOM05D005038 ORTHO05D006055 1.4e-68 263.8 261 51.0
Pp3c25_14660 Physcomitrium patens HOM05D005038 ORTHO05D006055 4.6e-67 258.8 259 51.0
Lalb_Chr16g0378241 Lupinus albus HOM05D005038 ORTHO05D006055 5.3e-63 245.4 185 72.4
Zm00001eb038220 Zea mays HOM05D005038 ORTHO05D006055 6.4e-61 238.4 232 56.0
Dinv29965 Davidia involucrata HOM05D005038 ORTHO05D006055 2.5e-57 226.5 234 57.3
SGA_v2.0_scaffold15G07261 Striga asiatica HOM05D005038 ORTHO05D006055 1.3e-50 204.1 300 40.3
AUR62001954 Chenopodium quinoa HOM05D005038 ORTHO05D006055 1.3e-40 171.0 139 60.4
MSTRG.2897 Avicennia marina HOM05D005038 ORTHO05D006055 9.4e-36 154.8 144 55.6
arahy.Tifrunner.gnm1.ann1.647UNH Arachis hypogaea HOM05D005038 ORTHO05D006055 6.3e-32 142.1 85 87.1
Pp3c4_31290 Physcomitrium patens HOM05D005038 ORTHO05D006055 6.1e-27 125.6 270 31.9
Mapoly0010s0198 Marchantia polymorpha HOM05D005038 ORTHO05D006055 4.4e-25 119.4 257 31.9
CDE06G1667 Ceratophyllum demersum HOM05D005038 ORTHO05D006055 1.2e-22 111.3 88 56.8
PRCOL_00004339 Prasinoderma coloniale HOM05D005038 ORTHO05D006055 6.5e-13 79.0 195 28.2
PRCOL_00004651 Prasinoderma coloniale HOM05D005038 ORTHO05D006055 1.5e-12 77.8 262 25.2
Solyc06g054330.3 Solanum lycopersicum HOM05D003236 ORTHO05D003620 6.8e-10 68.9 233 27.0
Sopen06g019440 Solanum pennellii HOM05D003236 ORTHO05D003620 1.2e-09 68.2 233 27.0
Nitab4.5_0000321g0010 Nicotiana tabacum HOM05D003236 ORTHO05D003620 1.5e-09 67.8 233 26.6
ECA248G2845 Erigeron canadensis HOM05D003236 ORTHO05D003620 5.7e-09 65.9 209 28.7
Nitab4.5_0013126g0020 Nicotiana tabacum HOM05D005038 ORTHO05D006055 5.7e-09 65.9 37 73.0
Sopen01g016440 Solanum pennellii HOM05D003236 ORTHO05D003620 7.5e-09 65.5 233 26.2
Migut.N00158 Erythranthe guttata HOM05D003236 ORTHO05D003620 9.8e-09 65.1 193 27.5
Nitab4.5_0008223g0010 Nicotiana tabacum HOM05D003236 ORTHO05D003620 1.3e-08 64.7 192 28.6
Nitab4.5_0006333g0030 Nicotiana tabacum HOM05D003236 ORTHO05D003620 1.7e-08 64.3 233 26.2
HanXRQChr01g0028881 Helianthus annuus HOM05D003236 ORTHO05D003620 3.7e-08 63.2 233 26.6
MSTRG.10005 Avicennia marina HOM05D003236 ORTHO05D003620 4.8e-08 62.8 234 25.2
TAR633G2542 Trochodendron aralioides HOM05D003236 ORTHO05D003620 4.8e-08 62.8 192 27.6
CAN.G851.10 Capsicum annuum HOM05D003236 ORTHO05D003620 6.3e-08 62.4 233 25.8
PGSC0003DMG402004220 Solanum tuberosum HOM05D003236 ORTHO05D003620 8.3e-08 62.0 162 30.9
TWI53G0183 Tripterygium wilfordii HOM05D003236 ORTHO05D003620 8.3e-08 62.0 193 27.5
Aqoxy2G03298 Aquilegia oxysepala HOM05D003236 ORTHO05D003620 1.1e-07 61.6 239 23.8
EL10Ac2g04006 Beta vulgaris HOM05D003236 ORTHO05D003620 1.8e-07 60.8 239 26.4
Lsat_1_v5_gn_1_50180 Lactuca sativa HOM05D003236 ORTHO05D003620 1.8e-07 60.8 236 24.2
HanXRQChr10g0286501 Helianthus annuus HOM05D003236 ORTHO05D003620 3.1e-07 60.1 192 26.6
Peaxi162Scf00069g01432 Petunia axillaris HOM05D003236 ORTHO05D003620 3.1e-07 60.1 232 25.4
Pp3c23_10340 Physcomitrium patens HOM05D003236 ORTHO05D003620 3.1e-07 60.1 221 21.7
Sc14g0008900 Simmondsia chinensis HOM05D001489 ORTHO05D001380 4.1e-07 59.7 198 25.8
Zm00001eb251870 Zea mays HOM05D003236 ORTHO05D003620 5.4e-07 59.3 195 28.7
TAR362G0648 Trochodendron aralioides HOM05D003236 ORTHO05D003620 7.0e-07 58.9 192 27.1
CSS0018012 Camellia sinensis var. sinensis HOM05D003236 ORTHO05D003620 9.1e-07 58.5 192 28.1
MBI19_g44204_MAGBIO Magnolia biondii HOM05D003236 ORTHO05D003620 9.1e-07 58.5 192 28.1
Actinidia23501 Actinidia chinensis HOM05D003236 ORTHO05D003620 1.2e-06 58.2 238 25.6
HanXRQChr11g0351171 Helianthus annuus HOM05D003236 ORTHO05D003620 1.6e-06 57.8 238 23.5
SGA_v2.0_scaffold75G24750 Striga asiatica HOM05D000182 ORTHO05D000112 1.6e-06 57.8 194 25.8
PGSC0003DMG401011813 Solanum tuberosum HOM05D003236 ORTHO05D003620 2.0e-06 57.4 140 31.4
Zm00001eb188220 Zea mays HOM05D003236 ORTHO05D003620 2.0e-06 57.4 238 26.5
Gorai.N027600 Gossypium raimondii HOM05D003236 ORTHO05D003620 3.5e-06 56.6 209 25.4
Hund19506 Selenicereus undatus HOM05D003236 ORTHO05D003620 3.5e-06 56.6 236 26.3
Dinv11695 Davidia involucrata HOM05D001489 ORTHO05D001380 4.5e-06 56.2 197 24.9
Dinv38409 Davidia involucrata HOM05D003236 ORTHO05D003620 5.9e-06 55.8 192 26.6
Rhsim12G0037500 Rhododendron simsii HOM05D002970 ORTHO05D001380 5.9e-06 55.8 195 25.6
Gohir.D05G232800 Gossypium hirsutum HOM05D003236 ORTHO05D003620 7.7e-06 55.5 209 24.9


User provided reference genes

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