Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G1883 Fragaria x ananassa HOM05D007419 ORTHO05D009327 0.0e+00 2234.5 1140 100.0
FAN26G2390 Fragaria x ananassa HOM05D007419 ORTHO05D009327 0.0e+00 2122.8 1140 95.7
FvH4_1g02590 Fragaria vesca HOM05D007419 ORTHO05D009327 0.0e+00 2117.0 1142 95.3
FAN19G0754 Fragaria x ananassa HOM05D007419 ORTHO05D009327 0.0e+00 2116.3 1140 95.2
RcHm_v2.0_Chr2g0087621 Rosa chinensis HOM05D007419 ORTHO05D009327 0.0e+00 1851.3 1145 83.7
MD15G1166600 Malus domestica HOM05D007419 ORTHO05D009327 0.0e+00 1461.0 1145 65.9
FAN23G1807 Fragaria x ananassa HOM05D007419 ORTHO05D009327 0.0e+00 1404.0 1140 70.0
Prupe.7G248700 Prunus persica HOM05D007419 ORTHO05D009327 0.0e+00 1399.8 1149 63.9
Cfa003423 Carpinus fangiana HOM05D007419 ORTHO05D009327 0.0e+00 1191.4 1146 55.5
QL09p047694 Quercus lobata HOM05D007419 ORTHO05D009327 0.0e+00 1175.2 1149 54.7
CANSAT11G1590 Cannabis sativa HOM05D007419 ORTHO05D009327 0.0e+00 1156.4 1130 55.0
Haze_25509 Corylus avellana HOM05D007419 ORTHO05D009327 0.0e+00 1156.4 1233 51.9
TAR636G1395 Trochodendron aralioides HOM05D007419 ORTHO05D009327 0.0e+00 1134.0 1152 53.2
Thecc.09G132300 Theobroma cacao HOM05D007419 ORTHO05D009327 0.0e+00 1112.1 1142 52.9
COL.COLO4_35160 Corchorus olitorius HOM05D007419 ORTHO05D009327 0.0e+00 1107.4 1121 52.8
Potri.018G126300 Populus trichocarpa HOM05D007419 ORTHO05D009327 7.8e-312 1074.7 1149 51.7
Gorai.013G235200 Gossypium raimondii HOM05D007419 ORTHO05D009327 2.3e-311 1072.4 1143 51.2
Sabra18G0107200 Salix brachista HOM05D007419 ORTHO05D009327 6.3e-304 1047.7 1149 50.8
arahy.Tifrunner.gnm1.ann1.XRJX6H Arachis hypogaea HOM05D007419 ORTHO05D009327 6.1e-299 1031.2 1149 49.2
Glyma.17G111300 Glycine max HOM05D007419 ORTHO05D009327 8.8e-298 1027.3 1141 48.6
Medtr4g115340 Medicago truncatula HOM05D007419 ORTHO05D009327 2.0e-297 1026.2 1140 48.9
TPR.G24826 Trifolium pratense HOM05D007419 ORTHO05D009327 4.1e-295 1018.5 1141 48.4
Lj7A626G73 Lonicera japonica HOM05D007419 ORTHO05D009327 2.8e-291 1005.7 1181 48.1
Ca_06942_v3 Cicer arietinum L. HOM05D007419 ORTHO05D009327 1.8e-290 1003.0 1140 49.0
Lj4g0016099 Lotus japonicus HOM05D007419 ORTHO05D009327 3.4e-289 998.8 1138 48.5
arahy.Tifrunner.gnm1.ann1.SLI0XQ Arachis hypogaea HOM05D007419 ORTHO05D009327 2.2e-288 996.1 1144 48.0
Phvul.003G168900 Phaseolus vulgaris HOM05D007419 ORTHO05D009327 7.0e-287 991.1 1140 47.6
Lalb_Chr13g0301571 Lupinus albus HOM05D007419 ORTHO05D009327 6.6e-285 984.6 1158 47.2
VMungo1215G0197 Vigna mungo HOM05D007419 ORTHO05D009327 4.4e-281 971.8 1143 47.2
Sed0020697 Sechium edule HOM05D007419 ORTHO05D009327 1.7e-277 959.9 1117 48.2
ClCG06G011500 Citrullus lanatus HOM05D007419 ORTHO05D009327 3.1e-274 949.1 1172 46.3
Atru.chr7.1950 Acer truncatum HOM05D007419 ORTHO05D009327 4.0e-274 948.7 981 51.8
Rhsim01G0061500 Rhododendron simsii HOM05D007419 ORTHO05D009327 5.4e-271 938.3 1253 44.7
Gohir.A13G200700 Gossypium hirsutum HOM05D007419 ORTHO05D009327 6.6e-269 931.4 1035 49.7
Dinv41474 Davidia involucrata HOM05D003622 ORTHO05D004453 1.2e-267 927.2 1146 46.8
DCAR_014901 Daucus carota HOM05D007419 ORTHO05D009327 9.9e-265 917.5 1169 44.8
MELO3C029461.2 Cucumis melo HOM05D007419 ORTHO05D009327 2.1e-259 899.8 1142 45.2
GSVIVG01015591001 Vitis vinifera HOM05D007419 ORTHO05D009327 1.1e-252 877.5 868 54.0
Peaxi162Scf00088g01333 Petunia axillaris HOM05D007419 ORTHO05D009327 1.9e-247 860.1 1144 44.1
Aqoxy7G03635 Aquilegia oxysepala HOM05D007419 ORTHO05D009327 4.6e-246 855.5 1104 45.9
AUR62013308 Chenopodium quinoa HOM05D007419 ORTHO05D009327 2.5e-244 849.7 1149 44.0
PGSC0003DMG400030908 Solanum tuberosum HOM05D007419 ORTHO05D009327 3.1e-242 842.8 1149 43.2
Sopen07g003800 Solanum pennellii HOM05D007419 ORTHO05D009327 7.6e-241 838.2 1146 42.7
Cc06_g08060 Coffea canephora HOM05D007419 ORTHO05D009327 1.3e-240 837.4 1158 42.7
Solyc07g007920.3 Solanum lycopersicum HOM05D007419 ORTHO05D009327 8.4e-240 834.7 1148 42.5
Nitab4.5_0003393g0060 Nicotiana tabacum HOM05D007419 ORTHO05D009327 1.1e-239 834.3 1148 42.8
Migut.K00424 Erythranthe guttata HOM05D007419 ORTHO05D009327 1.4e-239 833.9 1121 44.2
CsaV3_1G026730 Cucumis sativus L. HOM05D007419 ORTHO05D009327 3.1e-234 816.2 1161 43.1
Manes.06G047100 Manihot esculenta HOM05D007419 ORTHO05D009327 7.1e-231 805.1 812 52.7
Ah.09g224820 Amaranthus hybridus HOM05D007419 ORTHO05D009327 9.3e-231 804.7 1154 42.5
SalBow1G7934 Salvia bowleyana HOM05D007419 ORTHO05D009327 9.3e-231 804.7 1176 41.5
vmacro07721 Vaccinium macrocarpon HOM05D007419 ORTHO05D009327 1.5e-228 797.3 1014 44.3
HanXRQChr12g0356641 Helianthus annuus HOM05D007419 ORTHO05D009327 1.6e-227 793.9 1148 41.6
ECA234G0484 Erigeron canadensis HOM05D007419 ORTHO05D009327 4.0e-226 789.3 1142 41.5
Duzib168G0167 Durio zibethinus HOM05D007419 ORTHO05D009327 2.5e-223 780.0 1143 42.3
TWI34G0413 Tripterygium wilfordii HOM05D007419 ORTHO05D009327 7.7e-217 758.4 947 45.8
SGA_v2.0_scaffold109G31074 Striga asiatica HOM05D007419 ORTHO05D009327 1.9e-215 753.8 1121 41.3
Lsat_1_v5_gn_5_91781 Lactuca sativa HOM05D007419 ORTHO05D009327 5.5e-215 752.3 1157 39.5
Nitab4.5_0002008g0040 Nicotiana tabacum HOM05D007419 ORTHO05D009327 6.5e-208 728.8 1150 39.1
Actinidia21952 Actinidia chinensis HOM05D007419 ORTHO05D009327 4.2e-207 726.1 850 48.1
Psat4g039120 Pisum sativum HOM05D007419 ORTHO05D009327 2.0e-204 717.2 709 51.2
QL09p047989 Quercus lobata HOM05D007419 ORTHO05D009327 5.7e-204 715.7 942 43.3
CAN.G1315.3 Capsicum annuum HOM05D007419 ORTHO05D009327 4.2e-199 699.5 1023 40.7
Glyma.13G160200 Glycine max HOM05D007419 ORTHO05D009327 1.5e-196 691.0 1093 40.4
Sc08g0006270 Simmondsia chinensis HOM05D007419 ORTHO05D009327 3.8e-192 676.4 878 44.2
Eucgr.C01385 Eucalyptus grandis HOM05D007419 ORTHO05D009327 1.9e-191 674.1 865 46.1
Gohir.D13G206200 Gossypium hirsutum HOM05D007419 ORTHO05D009327 7.2e-191 672.2 690 50.6
Nn8g39549 Nelumbo nucifera HOM05D007419 ORTHO05D009327 1.1e-183 648.3 866 44.5
ATR0800G079 Amborella trichopoda HOM05D007419 ORTHO05D009327 5.0e-176 622.9 1028 38.0
QL09p047847 Quercus lobata HOM05D007419 ORTHO05D009327 1.2e-169 601.7 1150 37.0
SEGI_05905 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 9.8e-156 555.4 1080 33.6
SEGI_33879 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 9.9e-148 528.9 1190 31.3
MD15G1167400 Malus domestica HOM05D007419 ORTHO05D009327 8.1e-126 456.1 301 77.7
Os06g0173000 Oryza sativa ssp. japonica HOM05D007419 ORTHO05D009327 5.3e-125 453.4 1011 30.9
MBI15_g15110_MAGBIO Magnolia biondii HOM05D007419 ORTHO05D009327 2.7e-121 441.0 877 35.8
Hund26535 Selenicereus undatus HOM05D007419 ORTHO05D009327 9.3e-114 416.0 411 55.0
AUR62011176 Chenopodium quinoa HOM05D007419 ORTHO05D009327 5.7e-95 353.6 312 60.6
Zm00001eb375320 Zea mays HOM05D007419 ORTHO05D009327 3.7e-78 297.7 871 27.9
GSVIVG01015592001 Vitis vinifera HOM05D007419 ORTHO05D009327 4.8e-70 270.8 280 54.6
SMO340G0190 Selaginella moellendorffii HOM05D007419 ORTHO05D009327 1.4e-69 269.2 1098 24.8
CAN.G778.5 Capsicum annuum HOM05D007419 ORTHO05D009327 2.7e-68 265.0 203 61.1
Gohir.D13G206300 Gossypium hirsutum HOM05D007419 ORTHO05D009327 4.7e-65 254.2 278 50.7
Psat4g039080 Pisum sativum HOM05D007419 ORTHO05D009327 1.3e-62 246.1 335 45.4
QL09p046495 Quercus lobata HOM05D007419 ORTHO05D009327 1.6e-60 239.2 417 37.2
QL09p046570 Quercus lobata HOM05D007419 ORTHO05D009327 1.2e-57 229.6 409 36.7
TWI34G1676 Tripterygium wilfordii HOM05D007419 ORTHO05D009327 1.5e-55 222.6 211 59.7
Oeu012224.2 Olea europaea HOM05D007419 ORTHO05D009327 8.3e-54 216.9 434 34.1
CSS0048092 Camellia sinensis var. sinensis HOM05D007419 ORTHO05D009327 1.4e-53 216.1 234 53.4
SEGI_04675 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 9.2e-53 213.4 427 32.6
Actinidia21951 Actinidia chinensis HOM05D007419 ORTHO05D009327 6.8e-48 197.2 259 47.1
QL09p046488 Quercus lobata HOM05D007419 ORTHO05D009327 6.4e-46 190.7 158 65.8
QL09p046563 Quercus lobata HOM05D007419 ORTHO05D009327 6.4e-46 190.7 158 65.8
CBR_g6680 Chara braunii HOM05D007419 ORTHO05D009327 1.0e-43 183.3 991 22.8
EL10Ac8g18720 Beta vulgaris HOM05D007419 ORTHO05D009327 2.0e-39 169.1 154 59.7
Oeu038257.1 Olea europaea HOM05D007419 ORTHO05D009327 1.6e-36 159.5 221 44.3
Eucgr.C01386 Eucalyptus grandis HOM05D007419 ORTHO05D009327 2.3e-32 145.6 166 50.0
MD08G1122800 Malus domestica HOM05D007419 ORTHO05D009327 5.4e-29 134.4 85 78.8
SEGI_28656 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 2.0e-23 115.9 802 20.1
MSTRG.26436 Avicennia marina HOM05D007419 ORTHO05D009327 2.2e-22 112.5 152 42.1
Dinv10908 Davidia involucrata HOM05D007419 ORTHO05D009327 2.1e-17 95.9 121 48.8
Nn8g39545 Nelumbo nucifera HOM05D007419 ORTHO05D009327 6.2e-17 94.4 90 55.6
FAN19G1054 Fragaria x ananassa HOM05D058803 ORTHO05D045847 1.3e-09 70.1 49 75.5
FvH4_1g06080 Fragaria vesca HOM05D058803 ORTHO05D045847 8.1e-09 67.4 69 56.5
Medtr7g110110 Medicago truncatula HOM05D007419 ORTHO05D009327 1.8e-08 66.2 123 37.4


User provided reference genes

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