Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.7e-97 359.4 184 100.0
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 2.4e-88 328.9 186 92.5
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 4.0e-83 311.6 184 90.8
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 4.0e-83 311.6 184 90.8
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 3.6e-68 261.9 184 78.8
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 7.6e-66 254.2 184 76.6
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 8.7e-62 240.7 225 64.4
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 2.4e-48 196.1 221 57.5
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 3.2e-48 195.7 216 58.3
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 5.3e-43 178.3 240 52.5
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 9.0e-43 177.6 215 52.1
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 1.2e-42 177.2 224 52.7
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 1.5e-42 176.8 224 51.8
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 2.0e-42 176.4 191 57.1
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 2.2e-41 172.9 214 56.1
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 6.5e-41 171.4 237 51.5
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 1.9e-40 169.9 203 52.2
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 3.2e-40 169.1 203 53.7
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 9.3e-40 167.5 219 53.4
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 2.7e-39 166.0 221 52.5
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 6.0e-39 164.9 207 53.1
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 1.0e-38 164.1 223 51.6
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 1.3e-38 163.7 219 52.1
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 2.3e-38 162.9 214 53.3
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 1.5e-37 160.2 215 52.1
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 1.5e-37 160.2 215 51.6
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 4.3e-37 158.7 220 52.3
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 7.4e-37 157.9 220 51.8
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 1.3e-36 157.1 215 52.1
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 2.1e-36 156.4 223 51.6
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 2.1e-36 156.4 220 52.3
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 2.1e-36 156.4 223 48.9
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 2.1e-36 156.4 185 53.5
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 6.2e-36 154.8 211 48.8
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 8.2e-36 154.5 211 48.8
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 8.2e-36 154.5 213 46.5
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 1.1e-35 154.1 215 52.1
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 1.1e-35 154.1 202 54.0
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 1.0e-33 147.5 202 51.5
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 1.7e-33 146.7 198 55.1
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 1.7e-33 146.7 217 47.9
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 3.8e-33 145.6 196 49.5
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 1.4e-32 143.7 220 45.9
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 1.9e-32 143.3 218 45.0
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 7.2e-32 141.4 207 46.9
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 1.6e-31 140.2 190 51.6
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 2.1e-31 139.8 221 45.2
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 4.6e-31 138.7 218 45.9
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 6.1e-31 138.3 197 47.7
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 7.9e-31 137.9 190 52.1
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 1.3e-30 137.1 210 46.7
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 8.7e-30 134.4 209 45.9
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 8.7e-30 134.4 206 46.6
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 1.1e-29 134.0 190 47.4
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 1.9e-29 133.3 224 44.6
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 1.9e-29 133.3 193 51.3
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 9.7e-29 131.0 219 48.9
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 2.2e-28 129.8 201 46.8
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 2.2e-28 129.8 184 47.8
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 2.8e-28 129.4 199 47.2
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 2.8e-28 129.4 220 49.1
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 4.8e-28 128.6 188 45.2
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 4.8e-28 128.6 184 50.0
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 6.3e-28 128.3 218 48.6
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 6.3e-28 128.3 221 43.9
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 1.1e-27 127.5 207 43.0
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 1.8e-27 126.7 207 44.0
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 2.0e-26 123.2 197 45.7
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 2.6e-26 122.9 225 44.0
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 3.4e-26 122.5 189 45.5
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 5.9e-26 121.7 187 44.9
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 7.7e-26 121.3 198 44.9
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 7.7e-26 121.3 206 44.2
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 7.7e-26 121.3 193 43.5
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.3e-25 120.6 185 47.6
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 6.5e-25 118.2 159 49.7
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 8.5e-25 117.9 211 41.7
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 1.9e-24 116.7 184 46.7
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 1.9e-24 116.7 184 45.7
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 1.9e-24 116.7 184 45.7
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 2.5e-24 116.3 188 43.1
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 3.2e-24 115.9 191 44.5
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 4.2e-24 115.5 141 57.4
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 4.2e-24 115.5 132 51.5
CSS0026387 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 7.2e-24 114.8 194 43.3
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 7.2e-24 114.8 225 41.3
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 7.2e-24 114.8 216 44.0
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 9.4e-24 114.4 217 41.0
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.2e-23 114.0 192 42.7
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 6.1e-23 111.7 205 42.4
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 6.1e-23 111.7 212 42.0
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 6.1e-23 111.7 234 38.0
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 6.1e-23 111.7 220 40.5
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 6.1e-23 111.7 206 42.2
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 6.1e-23 111.7 163 47.9
Nn1g04611 Nelumbo nucifera HOM05D004032 ORTHO05D004462 1.0e-22 110.9 198 40.9
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 1.0e-22 110.9 188 40.4
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 1.4e-22 110.5 220 37.7
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 1.4e-22 110.5 212 41.5
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 2.3e-22 109.8 211 40.8
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 3.0e-22 109.4 212 44.8
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 3.0e-22 109.4 211 40.8
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 1.5e-21 107.1 178 42.7
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 7.4e-21 104.8 196 43.9
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 1.3e-20 104.0 205 41.0
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 2.8e-20 102.8 191 38.7
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 4.8e-20 102.1 190 38.4
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 6.3e-20 101.7 124 50.8
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 8.2e-20 101.3 193 42.5
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 2.4e-19 99.8 140 48.6
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 3.1e-19 99.4 193 39.4
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 4.1e-19 99.0 137 47.4
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 5.3e-19 98.6 108 50.0
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 1.2e-18 97.4 208 39.9
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 1.5e-18 97.1 110 51.8
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 2.0e-18 96.7 209 38.8
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 2.6e-18 96.3 194 38.7
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 2.6e-18 96.3 184 38.0
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 3.4e-18 95.9 121 50.4
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 4.5e-18 95.5 160 43.1
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 5.9e-18 95.1 110 51.8
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 1.0e-17 94.4 209 38.8
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 2.2e-17 93.2 146 45.2
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 5.0e-17 92.0 166 39.8
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 8.5e-17 91.3 188 37.8
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 1.1e-16 90.9 197 37.1
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 1.4e-16 90.5 146 44.5
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 1.4e-16 90.5 146 44.5
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 1.4e-16 90.5 197 37.1
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 3.2e-16 89.4 146 44.5
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 5.5e-16 88.6 233 36.5
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 9.4e-16 87.8 191 35.1
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 9.4e-16 87.8 191 35.1
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 2.1e-15 86.7 146 45.2
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 2.7e-15 86.3 193 36.8
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 2.7e-15 86.3 193 36.8
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 4.7e-15 85.5 190 35.8
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 4.7e-15 85.5 190 35.8
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 4.7e-15 85.5 190 35.8
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 4.7e-15 85.5 184 36.4
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 6.1e-15 85.1 193 36.3
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 6.1e-15 85.1 193 36.3
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 1.4e-14 84.0 160 38.8
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 1.8e-14 83.6 187 34.2
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 1.8e-14 83.6 184 37.0
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 2.3e-14 83.2 192 35.4
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 3.0e-14 82.8 246 34.1
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 5.1e-14 82.0 210 36.7
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 5.1e-14 82.0 193 35.8
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 1.1e-13 80.9 184 33.7
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 9.7e-13 77.8 223 35.0
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 1.7e-12 77.0 158 40.5
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 2.2e-12 76.6 167 39.5
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 2.8e-12 76.3 209 35.4
MELO3C007617.2 Cucumis melo HOM05D004032 ORTHO05D004462 8.2e-12 74.7 187 35.3
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 5.3e-11 72.0 58 63.8
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 2.0e-10 70.1 219 32.4
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 8.5e-09 64.7 95 45.3
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.9e-08 63.5 196 33.2
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.9e-08 63.5 62 51.6
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 2.5e-08 63.2 234 29.9
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 5.5e-08 62.0 242 31.0
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 1.2e-07 60.8 102 38.2
Zm00001eb134870 Zea mays HOM05D004032 ORTHO05D004462 2.1e-07 60.1 146 37.0
ClCG02G012390 Citrullus lanatus HOM05D004032 ORTHO05D004462 2.7e-07 59.7 192 30.7
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 2.7e-07 59.7 102 37.3
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 4.7e-07 58.9 151 34.4
Sed0005334 Sechium edule HOM05D004032 ORTHO05D004462 8.0e-07 58.2 160 35.0
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 8.0e-07 58.2 42 64.3
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 1.0e-06 57.8 42 61.9
Thecc.09G178300 Theobroma cacao HOM05D007665 ORTHO05D008293 1.4e-06 57.4 226 25.7
ATR0580G179 Amborella trichopoda HOM05D007665 ORTHO05D008293 1.8e-06 57.0 252 28.2
PSO170G3678 Papaver somniferum HOM05D007665 ORTHO05D008293 1.8e-06 57.0 70 44.3
PSO063G5967 Papaver somniferum HOM05D007665 ORTHO05D008293 2.3e-06 56.6 70 42.9
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 5.2e-06 55.5 155 31.6


User provided reference genes

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