Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 0.0e+00 1219.1 613 100.0
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 0.0e+00 1214.5 613 99.5
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 0.0e+00 1162.9 600 98.0
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 0.0e+00 1140.2 612 93.5
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 5.6e-307 1057.0 610 87.5
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 1.3e-298 1029.2 604 85.3
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 1.5e-296 1022.3 605 85.0
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 5.8e-296 1020.4 607 84.7
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 1.2e-293 1012.7 601 85.0
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 1.6e-293 1012.3 600 84.7
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 4.0e-289 997.7 607 83.5
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 2.9e-287 991.5 610 82.5
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 4.2e-286 987.6 608 82.2
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 1.2e-285 986.1 600 82.8
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 3.9e-284 981.1 605 81.3
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 3.9e-284 981.1 608 81.2
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 1.3e-282 976.1 605 80.7
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 1.3e-282 976.1 608 81.4
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 1.6e-282 975.7 597 82.2
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 1.4e-281 972.6 604 82.5
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 2.0e-280 968.8 603 81.6
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 8.4e-279 963.4 596 82.0
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 1.4e-278 962.6 609 79.3
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 5.5e-278 960.7 602 81.1
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 6.0e-277 957.2 603 80.4
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 7.9e-277 956.8 603 80.8
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.0e-276 956.4 610 79.3
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 3.0e-276 954.9 603 80.6
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 5.1e-276 954.1 603 80.4
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 6.7e-276 953.7 602 80.9
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 1.5e-275 952.6 610 79.8
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 5.7e-275 950.7 611 79.2
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 9.6e-275 949.9 614 80.1
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.1e-274 948.7 612 78.9
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 1.4e-273 946.0 603 79.6
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 1.8e-273 945.7 621 79.9
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 5.3e-273 944.1 606 79.9
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 6.9e-273 943.7 600 80.3
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 1.5e-272 942.6 606 79.7
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 1.5e-272 942.6 610 78.2
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 2.6e-272 941.8 606 79.5
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 4.5e-272 941.0 610 78.2
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 7.6e-272 940.3 610 78.7
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 3.8e-271 937.9 606 77.7
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 5.0e-271 937.6 593 80.6
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 1.2e-269 932.9 615 77.4
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.2e-269 932.9 602 79.1
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 4.6e-269 931.0 610 77.5
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 4.6e-269 931.0 610 78.0
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 1.8e-268 929.1 595 78.8
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 8.7e-268 926.8 605 78.8
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 1.1e-267 926.4 605 78.3
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 3.3e-267 924.9 605 78.0
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 7.4e-267 923.7 598 78.3
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.6e-266 922.5 582 80.8
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 6.3e-266 920.6 605 77.7
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 6.3e-266 920.6 615 77.2
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 3.1e-265 918.3 586 80.0
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 4.1e-265 917.9 598 78.4
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 1.0e-263 913.3 634 75.1
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 1.4e-262 909.4 639 74.3
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 5.5e-262 907.5 606 76.7
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 1.6e-261 906.0 584 78.9
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 6.1e-261 904.0 609 77.3
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.4e-260 902.9 571 80.6
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 3.0e-260 901.7 614 76.4
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 5.1e-260 901.0 601 76.2
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 1.1e-259 899.8 596 76.5
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 2.0e-259 899.0 600 75.8
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 2.0e-259 899.0 599 77.5
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 3.3e-259 898.3 597 76.0
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 3.3e-259 898.3 620 75.8
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.3e-258 896.3 573 80.5
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 1.5e-256 889.4 600 77.0
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 1.4e-254 882.9 601 74.9
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 7.2e-254 880.6 594 74.6
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 1.1e-251 873.2 611 73.3
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 1.5e-251 872.8 561 79.5
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 7.4e-251 870.5 608 73.2
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 3.1e-249 865.1 667 67.6
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 4.1e-249 864.8 519 83.8
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 4.1e-249 864.8 552 79.9
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 5.3e-249 864.4 591 73.4
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 4.5e-248 861.3 612 72.5
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 1.3e-247 859.8 604 73.7
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.6e-245 852.8 609 72.6
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 8.0e-245 850.5 606 72.4
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 4.4e-243 844.7 581 75.0
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 4.4e-243 844.7 611 72.2
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 7.4e-243 844.0 615 70.6
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 7.4e-243 844.0 604 72.0
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 6.3e-242 840.9 603 72.8
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 1.8e-241 839.3 576 75.9
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 4.1e-241 838.2 607 73.3
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 5.9e-240 834.3 561 74.9
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 3.8e-239 831.6 558 75.1
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 6.5e-239 830.9 607 71.3
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 1.1e-238 830.1 609 72.2
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 1.5e-238 829.7 607 71.8
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 3.2e-238 828.6 603 72.3
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 7.2e-238 827.4 598 72.9
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 9.4e-238 827.0 603 72.1
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 2.7e-237 825.5 601 72.2
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 8.0e-237 823.9 414 99.0
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 1.4e-236 823.2 573 75.2
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 4.0e-236 821.6 574 74.6
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 4.0e-236 821.6 574 74.6
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 5.2e-236 821.2 587 71.6
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 8.8e-236 820.5 606 71.5
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 3.7e-234 815.1 610 69.3
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 4.8e-234 814.7 578 73.0
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 2.0e-232 809.3 570 73.7
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 2.7e-232 808.9 610 69.5
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 4.2e-230 801.6 619 67.5
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 3.6e-229 798.5 580 71.7
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 3.0e-228 795.4 577 71.9
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 3.0e-228 795.4 577 71.9
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 6.3e-226 787.7 608 69.9
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 2.4e-225 785.8 602 70.1
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 2.0e-224 782.7 600 68.8
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 1.4e-220 770.0 543 74.8
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 5.2e-220 768.1 525 75.2
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 3.7e-218 761.9 535 72.7
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 5.4e-217 758.1 523 73.0
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 2.9e-215 752.3 595 66.2
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 2.5e-214 749.2 577 67.9
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 5.2e-212 741.5 523 73.2
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 8.9e-212 740.7 602 64.1
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.5e-211 740.0 551 69.0
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 7.5e-211 737.6 594 66.7
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 1.2e-208 730.3 567 66.7
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 4.3e-206 721.8 419 85.7
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 1.5e-203 713.4 605 65.0
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 4.4e-203 711.8 604 63.7
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 5.8e-203 711.4 582 64.4
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.1e-201 705.3 527 68.1
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.0e-199 700.7 527 67.9
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.7e-199 699.9 527 67.7
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 3.0e-199 699.1 414 84.5
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 8.6e-199 697.6 412 83.7
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.7e-191 673.3 495 69.5
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.1e-191 671.8 527 65.8
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 4.0e-188 662.1 513 66.9
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 6.4e-186 654.8 528 64.0
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 1.0e-183 647.5 462 73.8
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.4e-180 637.1 340 95.3
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 2.4e-164 583.2 570 54.4
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 1.0e-159 567.8 380 75.0
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 1.1e-158 564.3 533 59.5
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.8e-156 557.0 476 60.3
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 6.3e-149 531.9 341 78.6
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 3.1e-132 476.5 457 57.5
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 4.1e-108 396.4 239 81.2
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.6e-72 278.1 157 87.3
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 2.4e-68 264.2 145 91.7
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 2.5e-49 201.1 195 53.8
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 6.2e-48 196.4 195 52.3
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 1.2e-46 192.2 161 59.0
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 7.6e-46 189.5 161 58.4
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 3.9e-42 177.2 98 90.8
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 3.4e-38 164.1 131 64.1
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 2.6e-25 121.3 94 67.0
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 9.1e-23 112.8 94 61.7
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 3.4e-22 110.9 115 54.8
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 1.7e-21 108.6 60 90.0
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 9.4e-20 102.8 318 26.4
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 1.5e-17 95.5 126 39.7
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 6.3e-16 90.1 100 55.0
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.1e-15 89.4 280 28.6
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.1e-15 87.4 190 30.5
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.1e-15 87.4 216 33.3
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 2.0e-14 85.1 81 66.7
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 1.0e-13 82.8 86 53.5
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 3.3e-09 67.8 74 56.8
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 2.8e-08 64.7 54 55.6
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 3.5e-06 57.8 74 47.3


User provided reference genes

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