Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G1785 Fragaria x ananassa HOM05D006257 ORTHO05D007708 2.0e-105 386.0 217 100.0
FvH4_1g03010 Fragaria vesca HOM05D006257 ORTHO05D007708 9.8e-105 383.6 217 99.5
FAN23G1258 Fragaria x ananassa HOM05D006257 ORTHO05D007708 5.9e-102 374.4 217 97.2
FAN26G0886 Fragaria x ananassa HOM05D006257 ORTHO05D007708 1.3e-101 373.2 217 97.2
FAN19G0162 Fragaria x ananassa HOM05D006257 ORTHO05D007708 1.3e-85 320.1 173 100.0
RcHm_v2.0_Chr2g0088141 Rosa chinensis HOM05D006257 ORTHO05D007708 1.6e-78 296.6 221 80.1
MD02G1029500 Malus domestica HOM05D006257 ORTHO05D007708 7.1e-63 244.6 219 67.1
GSVIVG01015564001 Vitis vinifera HOM05D006257 ORTHO05D007708 3.0e-61 239.2 210 65.2
MD15G1170900 Malus domestica HOM05D006257 ORTHO05D007708 3.9e-61 238.8 208 68.8
TPR.G26482 Trifolium pratense HOM05D006257 ORTHO05D007708 5.1e-61 238.4 223 64.1
Prupe.7G245400 Prunus persica HOM05D006257 ORTHO05D007708 7.3e-60 234.6 215 66.0
Ca_06925_v3 Cicer arietinum L. HOM05D006257 ORTHO05D007708 1.6e-59 233.4 217 63.6
vmacro20574 Vaccinium macrocarpon HOM05D006257 ORTHO05D007708 1.8e-58 229.9 207 64.7
Glyma.06G224200 Glycine max HOM05D006257 ORTHO05D007708 2.4e-58 229.6 220 63.2
Medtr0339s0030 Medicago truncatula HOM05D006257 ORTHO05D007708 3.1e-58 229.2 220 63.6
CiPaw.04G172800 Carya illinoinensis HOM05D006257 ORTHO05D007708 1.2e-57 227.3 219 62.1
CsaV3_2G002980 Cucumis sativus L. HOM05D006257 ORTHO05D007708 2.0e-57 226.5 197 68.0
Potri.006G067600 Populus trichocarpa HOM05D006257 ORTHO05D007708 4.4e-57 225.3 203 64.5
Potri.018G129600 Populus trichocarpa HOM05D006257 ORTHO05D007708 4.4e-57 225.3 226 62.8
Glyma.04G142800 Glycine max HOM05D006257 ORTHO05D007708 5.8e-57 224.9 202 65.8
Lj4g0014254 Lotus japonicus HOM05D006257 ORTHO05D007708 7.6e-57 224.6 215 62.3
CSS0030940 Camellia sinensis var. sinensis HOM05D006257 ORTHO05D007708 1.7e-56 223.4 206 63.6
Phvul.003G166300 Phaseolus vulgaris HOM05D006257 ORTHO05D007708 1.7e-56 223.4 219 62.6
VMungo1215G0813 Vigna mungo HOM05D006257 ORTHO05D007708 2.2e-56 223.0 219 61.2
Thecc.09G128900 Theobroma cacao HOM05D006257 ORTHO05D007708 4.9e-56 221.9 242 58.3
ClCG11G003160 Citrullus lanatus HOM05D006257 ORTHO05D007708 6.4e-56 221.5 197 65.5
COL.COLO4_35097 Corchorus olitorius HOM05D006257 ORTHO05D007708 1.1e-55 220.7 206 62.6
MELO3C004491.2 Cucumis melo HOM05D006257 ORTHO05D007708 1.1e-55 220.7 197 66.0
Manes.06G057000 Manihot esculenta HOM05D006257 ORTHO05D007708 1.1e-55 220.7 211 63.5
arahy.Tifrunner.gnm1.ann1.FTT948 Arachis hypogaea HOM05D006257 ORTHO05D007708 1.4e-55 220.3 217 61.8
arahy.Tifrunner.gnm1.ann1.BX3F9W Arachis hypogaea HOM05D006257 ORTHO05D007708 1.9e-55 219.9 217 61.8
CiPaw.03G245900 Carya illinoinensis HOM05D006257 ORTHO05D007708 1.9e-55 219.9 219 62.1
Duzib168G0222 Durio zibethinus HOM05D006257 ORTHO05D007708 2.4e-55 219.5 208 61.1
Lalb_Chr07g0179081 Lupinus albus HOM05D006257 ORTHO05D007708 3.2e-55 219.2 218 61.9
Gohir.A07G036500 Gossypium hirsutum HOM05D006257 ORTHO05D007708 9.3e-55 217.6 224 60.7
Gohir.D07G040500 Gossypium hirsutum HOM05D006257 ORTHO05D007708 9.3e-55 217.6 209 62.7
Gorai.001G043000 Gossypium raimondii HOM05D006257 ORTHO05D007708 9.3e-55 217.6 209 62.7
Sed0025440 Sechium edule HOM05D006257 ORTHO05D007708 9.3e-55 217.6 197 64.5
TAR636G3495 Trochodendron aralioides HOM05D006257 ORTHO05D007708 2.1e-54 216.5 207 61.8
Atru.chr7.1126 Acer truncatum HOM05D006257 ORTHO05D007708 2.7e-54 216.1 224 58.9
Hma1.2p1_0931F.1_g238140 Hydrangea macrophylla HOM05D006257 ORTHO05D007708 2.7e-54 216.1 208 61.1
Lalb_Chr13g0301741 Lupinus albus HOM05D006257 ORTHO05D007708 2.7e-54 216.1 222 60.8
PGR102G0698 Punica granatum HOM05D006257 ORTHO05D007708 2.7e-54 216.1 223 60.5
Actinidia21972 Actinidia chinensis HOM05D006257 ORTHO05D007708 4.6e-54 215.3 223 59.6
Sabra06G0050300 Salix brachista HOM05D006257 ORTHO05D007708 4.6e-54 215.3 220 59.5
Duzib187G1365 Durio zibethinus HOM05D006257 ORTHO05D007708 6.0e-54 214.9 207 60.9
Ciclev10009322m.g Citrus clementina HOM05D006257 ORTHO05D007708 1.3e-53 213.8 204 62.3
QL02p088998 Quercus lobata HOM05D006257 ORTHO05D007708 2.3e-53 213.0 218 59.6
Actinidia40485 Actinidia chinensis HOM05D006257 ORTHO05D007708 3.9e-53 212.2 209 60.8
Aqoxy7G02265 Aquilegia oxysepala HOM05D006257 ORTHO05D007708 6.6e-53 211.5 215 59.1
Peaxi162Scf00313g00815 Petunia axillaris HOM05D006257 ORTHO05D007708 6.6e-53 211.5 222 57.2
Nitab4.5_0006319g0030 Nicotiana tabacum HOM05D006257 ORTHO05D007708 2.5e-52 209.5 211 56.9
MBI04_g29340_MAGBIO Magnolia biondii HOM05D006257 ORTHO05D007708 4.3e-52 208.8 224 58.9
Sabra18G0110100 Salix brachista HOM05D006257 ORTHO05D007708 4.3e-52 208.8 226 58.0
Cpa.g.sc46.16 Carica papaya HOM05D006257 ORTHO05D007708 7.3e-52 208.0 203 60.1
Nitab4.5_0001349g0030 Nicotiana tabacum HOM05D006257 ORTHO05D007708 7.3e-52 208.0 211 56.9
Solyc12g009600.2 Solanum lycopersicum HOM05D006257 ORTHO05D007708 9.6e-52 207.6 200 58.5
Sopen12g004590 Solanum pennellii HOM05D006257 ORTHO05D007708 1.6e-51 206.8 200 58.5
Lalb_Chr08g0234691 Lupinus albus HOM05D006257 ORTHO05D007708 2.8e-51 206.1 221 57.5
DCAR_020916 Daucus carota HOM05D006257 ORTHO05D007708 4.0e-50 202.2 222 56.3
Eucgr.C04235 Eucalyptus grandis HOM05D006257 ORTHO05D007708 2.0e-49 199.9 220 55.9
CAN.G551.82 Capsicum annuum HOM05D006257 ORTHO05D007708 2.6e-49 199.5 200 57.0
TWI34G0058 Tripterygium wilfordii HOM05D006257 ORTHO05D007708 9.9e-49 197.6 199 60.3
EL10Ac8g18684 Beta vulgaris HOM05D006257 ORTHO05D007708 1.3e-48 197.2 210 57.6
Lj7A424T23 Lonicera japonica HOM05D006257 ORTHO05D007708 1.3e-48 197.2 215 57.2
PSO210G1954 Papaver somniferum HOM05D006257 ORTHO05D007708 3.8e-48 195.7 219 54.3
Hund09262 Selenicereus undatus HOM05D006257 ORTHO05D007708 3.8e-48 195.7 179 61.5
Glyma.17G113300 Glycine max HOM05D006257 ORTHO05D007708 1.1e-47 194.1 200 59.0
TAR625G1128 Trochodendron aralioides HOM05D006257 ORTHO05D007708 1.1e-47 194.1 147 73.5
Haze_25555 Corylus avellana HOM05D006257 ORTHO05D007708 1.4e-47 193.7 219 55.7
ECA234G3820 Erigeron canadensis HOM05D006257 ORTHO05D007708 1.4e-47 193.7 173 61.8
FAN19G1291 Fragaria x ananassa HOM05D006257 ORTHO05D007708 1.4e-47 193.7 112 100.0
Oeu052179.2 Olea europaea HOM05D006257 ORTHO05D007708 1.4e-47 193.7 221 55.2
THA.LOC104808977 Tarenaya hassleriana HOM05D006257 ORTHO05D007708 2.4e-47 193.0 224 54.9
HanXRQChr10g0315681 Helianthus annuus HOM05D006257 ORTHO05D007708 3.2e-47 192.6 216 53.7
TWI63G0502 Tripterygium wilfordii HOM05D006257 ORTHO05D007708 9.3e-47 191.0 202 59.4
Thhalv10028953m.g Eutrema salsugineum HOM05D006257 ORTHO05D007708 1.6e-46 190.3 173 64.7
PSO210G1348 Papaver somniferum HOM05D006257 ORTHO05D007708 3.5e-46 189.1 219 53.0
Sp6g02450 Schrenkiella parvula HOM05D006257 ORTHO05D007708 6.0e-46 188.3 173 63.0
Carub.0006s3460 Capsella rubella HOM05D006257 ORTHO05D007708 1.0e-45 187.6 173 65.3
BcaC04g23996 Brassica carinata HOM05D006257 ORTHO05D007708 1.3e-45 187.2 174 62.6
C09p02090 Brassica napus HOM05D006257 ORTHO05D007708 1.3e-45 187.2 174 62.6
BolC9t53138H Brassica oleracea HOM05D006257 ORTHO05D007708 1.3e-45 187.2 174 62.6
Cc06_g08290 Coffea canephora HOM05D006257 ORTHO05D007708 1.3e-45 187.2 220 55.0
CDE07G0641 Ceratophyllum demersum HOM05D006257 ORTHO05D007708 2.3e-45 186.4 171 60.2
AL6G50510 Arabidopsis lyrata HOM05D006257 ORTHO05D007708 3.0e-45 186.0 173 64.7
AT4G02530 Arabidopsis thaliana HOM05D006257 ORTHO05D007708 3.0e-45 186.0 173 64.7
CARHR250830 Cardamine hirsuta HOM05D006257 ORTHO05D007708 3.9e-45 185.7 172 64.0
SGA_v2.0_scaffold63G21838 Striga asiatica HOM05D006257 ORTHO05D007708 3.9e-45 185.7 198 58.1
BraA09t35849Z Brassica rapa HOM05D006257 ORTHO05D007708 6.7e-45 184.9 222 53.6
AUR62011151 Chenopodium quinoa HOM05D006257 ORTHO05D007708 6.7e-45 184.9 193 56.5
A09p01980 Brassica napus HOM05D006257 ORTHO05D007708 1.9e-44 183.3 222 52.7
Oeu038255.2 Olea europaea HOM05D006257 ORTHO05D007708 2.5e-44 183.0 274 46.7
Sc14g0000190 Simmondsia chinensis HOM05D006257 ORTHO05D007708 2.5e-44 183.0 173 60.1
MSTRG.26415 Avicennia marina HOM05D006257 ORTHO05D007708 4.3e-44 182.2 223 52.9
HPP92_024119 Vanilla planifolia HOM05D006257 ORTHO05D007708 1.3e-43 180.6 213 55.9
ATR0598G180 Amborella trichopoda HOM05D006257 ORTHO05D007708 1.6e-43 180.3 227 53.7
HPP92_024114 Vanilla planifolia HOM05D006257 ORTHO05D007708 1.6e-43 180.3 213 55.4
Os06g0705100 Oryza sativa ssp. japonica HOM05D006257 ORTHO05D007708 6.2e-43 178.3 171 59.6
AUR62013336 Chenopodium quinoa HOM05D006257 ORTHO05D007708 4.0e-42 175.6 234 48.7
Ah.09g225230 Amaranthus hybridus HOM05D006257 ORTHO05D007708 6.9e-42 174.9 173 56.1
Lsat_1_v5_gn_5_95081 Lactuca sativa HOM05D006257 ORTHO05D007708 1.2e-41 174.1 207 52.7
unitig_37.g12643 Utricularia gibba HOM05D006257 ORTHO05D007708 1.2e-41 174.1 147 63.9
Aa31LG5G2160 Aethionema arabicum HOM05D006257 ORTHO05D007708 1.5e-41 173.7 208 53.4
Migut.K00442 Erythranthe guttata HOM05D006257 ORTHO05D007708 1.5e-41 173.7 239 48.5
CANSAT11G2152 Cannabis sativa HOM05D006257 ORTHO05D007708 9.9e-41 171.0 134 70.9
Zm00001eb227340 Zea mays HOM05D006257 ORTHO05D007708 1.3e-40 170.6 145 64.1
Nn8g39488 Nelumbo nucifera HOM05D006257 ORTHO05D007708 1.3e-37 160.6 187 52.9
Aqoxy7G03671 Aquilegia oxysepala HOM05D006257 ORTHO05D007708 1.2e-33 147.5 165 54.5
Mapoly0099s0035 Marchantia polymorpha HOM05D006257 ORTHO05D007708 4.5e-33 145.6 141 55.3
Dinv36505 Davidia involucrata HOM05D006257 ORTHO05D007708 6.5e-32 141.7 157 53.5
Manes.14G133800 Manihot esculenta HOM05D006257 ORTHO05D007708 1.2e-30 137.5 169 51.5
SMO111G0154 Selaginella moellendorffii HOM05D006257 ORTHO05D007708 1.2e-30 137.5 142 51.4
Sed0003979 Sechium edule HOM05D006257 ORTHO05D007708 1.6e-30 137.1 138 63.0
Psat4g037320 Pisum sativum HOM05D006257 ORTHO05D007708 3.0e-29 132.9 166 50.6
BcaC03g16142 Brassica carinata HOM05D006257 ORTHO05D007708 6.7e-29 131.7 140 58.6
AagrBONN_evm.TU.Sc2ySwM_344.2604 Anthoceros agrestis HOM05D006257 ORTHO05D007708 5.7e-28 128.6 143 51.0
A02p24830 Brassica napus HOM05D006257 ORTHO05D007708 9.6e-28 127.9 128 59.4
BraA02t07471Z Brassica rapa HOM05D007780 ORTHO05D000140 1.4e-26 124.0 128 57.0
Pp3c8_15020 Physcomitrium patens HOM05D006257 ORTHO05D007708 1.9e-23 113.6 144 45.1
Mapoly0522s0001 Marchantia polymorpha HOM05D006257 ORTHO05D007708 1.5e-20 104.0 103 52.4
SEGI_32211 Sequoiadendron giganteum HOM05D006257 ORTHO05D007708 2.8e-19 99.8 111 49.5
Pp3c24_6770 Physcomitrium patens HOM05D006257 ORTHO05D007708 1.6e-14 84.0 194 35.6
C02p39320 Brassica napus HOM05D006257 ORTHO05D007708 1.5e-12 77.4 75 57.3
BcaB05g23639 Brassica carinata HOM05D006257 ORTHO05D007708 4.7e-06 55.8 66 51.5


User provided reference genes

Program Settings