Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 2.6e-240 835.1 462 100.0
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 6.0e-237 823.9 462 98.5
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.5e-235 819.3 462 98.5
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 2.2e-231 805.4 454 98.2
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 3.4e-224 781.6 462 93.3
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 8.7e-220 766.9 551 81.9
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 6.1e-197 691.0 462 84.6
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 3.8e-191 671.8 462 82.7
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 5.3e-185 651.4 462 79.0
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 4.7e-181 638.3 462 78.6
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 4.7e-181 638.3 461 79.0
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 6.1e-181 637.9 462 78.1
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 1.0e-180 637.1 462 79.0
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 2.3e-180 636.0 459 77.1
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 4.0e-180 635.2 462 76.6
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 6.8e-180 634.4 459 76.7
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 8.8e-180 634.0 462 78.6
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 1.2e-179 633.6 462 78.4
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 7.5e-179 630.9 464 77.8
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 9.8e-179 630.6 464 71.6
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 3.7e-178 628.6 462 78.1
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 3.7e-178 628.6 463 76.7
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 9.1e-177 624.0 459 75.4
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 2.7e-176 622.5 459 75.2
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 2.9e-175 619.0 462 76.0
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 5.0e-175 618.2 460 76.1
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 5.0e-175 618.2 462 76.4
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 2.5e-174 615.9 462 76.6
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 7.2e-174 614.4 460 74.8
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 2.1e-173 612.8 459 74.9
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 2.3e-172 609.4 462 74.9
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 5.2e-172 608.2 459 75.6
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 5.2e-172 608.2 461 74.0
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 6.8e-172 607.8 465 75.1
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 3.4e-171 605.5 459 68.8
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 3.4e-171 605.5 459 68.8
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 7.5e-171 604.4 462 74.9
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 7.5e-171 604.4 460 75.4
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 1.3e-170 603.6 460 73.7
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 2.8e-170 602.4 441 78.5
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 6.3e-170 601.3 460 75.2
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 6.3e-170 601.3 462 73.2
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 8.3e-170 600.9 459 74.7
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 1.4e-169 600.1 460 75.0
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 1.8e-169 599.7 462 72.5
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 2.4e-169 599.4 462 75.3
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 3.1e-169 599.0 463 74.3
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 3.1e-169 599.0 504 65.5
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 5.4e-169 598.2 463 73.0
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 5.4e-169 598.2 459 72.8
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 1.3e-167 593.6 459 74.3
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 1.3e-167 593.6 458 72.5
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 2.9e-167 592.4 462 74.2
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 6.6e-167 591.3 462 74.0
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 1.1e-166 590.5 459 73.6
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 1.1e-166 590.5 462 70.6
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 1.5e-166 590.1 462 72.1
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 1.5e-166 590.1 460 73.7
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 2.5e-166 589.3 462 72.9
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 4.3e-166 588.6 462 72.3
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 2.1e-165 586.3 454 72.9
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 3.6e-165 585.5 466 72.3
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 1.4e-164 583.6 462 71.9
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 5.2e-164 581.6 462 72.3
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 1.5e-163 580.1 462 72.7
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 2.0e-163 579.7 493 69.4
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 5.7e-163 578.2 459 70.6
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 7.5e-163 577.8 462 72.5
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 1.3e-162 577.0 476 69.3
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 2.9e-162 575.9 462 72.3
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 6.4e-162 574.7 483 68.5
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 1.4e-161 573.5 459 69.5
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 2.7e-160 569.3 464 72.0
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 4.6e-160 568.5 464 71.6
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 1.0e-159 567.4 462 71.2
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 2.3e-159 566.2 459 71.5
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 4.7e-157 558.5 460 71.1
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 6.2e-157 558.1 462 71.0
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 1.0e-156 557.4 460 71.1
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 2.9e-154 549.3 463 70.8
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 8.3e-154 547.7 462 68.8
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 2.4e-153 546.2 461 68.3
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 2.4e-153 546.2 462 68.0
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.2e-152 543.9 462 68.4
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 1.6e-152 543.5 465 64.7
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.6e-152 543.5 462 69.3
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 1.7e-151 540.0 466 67.6
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 6.6e-151 538.1 462 67.3
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 2.1e-149 533.1 456 68.9
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 1.1e-148 530.8 456 68.6
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 5.2e-148 528.5 456 68.4
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 6.8e-148 528.1 387 69.5
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 1.5e-147 526.9 463 66.3
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 1.5e-147 526.9 456 67.8
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.5e-147 526.9 462 65.4
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 2.6e-147 526.2 388 70.1
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 2.6e-147 526.2 462 63.6
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 2.4e-145 519.6 387 69.0
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 2.7e-144 516.2 463 60.0
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 1.3e-143 513.8 462 66.2
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 1.5e-142 510.4 389 68.4
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 7.3e-142 508.1 382 76.7
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 9.9e-139 497.7 459 65.4
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 1.3e-138 497.3 460 65.0
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 2.2e-138 496.5 388 66.8
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 1.1e-137 494.2 461 63.1
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 3.5e-136 489.2 463 64.4
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 8.6e-135 484.6 393 71.8
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 4.3e-134 482.3 496 61.7
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 3.6e-133 479.2 462 59.3
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 3.0e-127 459.5 466 60.5
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 1.5e-126 457.2 462 63.0
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 5.3e-116 422.2 462 56.1
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.6e-112 410.6 466 53.6
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 4.0e-108 396.0 367 58.0
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 7.9e-104 381.7 345 62.0
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 5.1e-95 352.4 461 48.4
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 9.1e-92 341.7 323 60.7
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 5.5e-81 305.8 291 66.3
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 3.2e-65 253.4 411 40.6
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 1.4e-63 248.1 462 40.3
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 2.8e-56 223.8 242 52.9
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 9.2e-52 208.8 194 61.9
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 3.8e-50 203.4 123 87.8
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 4.7e-48 196.4 506 37.0
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 2.9e-45 187.2 405 30.6
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 9.2e-44 182.2 168 58.3
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.3e-41 173.7 123 69.1
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 2.8e-40 170.6 166 57.2
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 6.4e-37 159.5 134 59.7
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 9.2e-36 155.6 156 60.3
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 7.3e-33 146.0 506 31.2
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 3.1e-23 114.0 220 35.9
Psat2g003760 Pisum sativum HOM05D005230 ORTHO05D006506 3.4e-22 110.5 91 63.7
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 3.9e-18 97.1 114 49.1
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 2.5e-17 94.4 54 88.9
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 1.2e-16 92.0 101 76.2
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 6.2e-16 89.7 61 75.4
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 1.7e-10 71.6 66 60.6
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 3.9e-10 70.5 60 58.3
THA.LOC104805832 Tarenaya hassleriana HOM05D004145 ORTHO05D004879 3.3e-09 67.4 422 23.5
Dinv24611 Davidia involucrata HOM05D005230 ORTHO05D006506 5.6e-09 66.6 48 77.1
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 5.6e-09 66.6 81 44.4
TAR623G0477 Trochodendron aralioides HOM05D005230 ORTHO05D006506 1.6e-08 65.1 37 86.5
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 3.6e-08 63.9 60 55.0
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 4.8e-08 63.5 62 51.6
Psat2g028360 Pisum sativum HOM05D005230 ORTHO05D006506 2.4e-07 61.2 49 65.3
Peaxi162Scf00225g00424 Petunia axillaris HOM05D004145 ORTHO05D004879 2.0e-06 58.2 410 21.0
PRCOL_00001177 Prasinoderma coloniale HOM05D004145 ORTHO05D004879 2.6e-06 57.8 261 24.9
AagrBONN_evm.TU.Sc2ySwM_228.295 Anthoceros agrestis HOM05D004145 ORTHO05D004879 9.9e-06 55.8 288 25.7
CAN.G134.208 Capsicum annuum HOM05D004145 ORTHO05D004879 9.9e-06 55.8 408 20.3
Psat1g145560 Pisum sativum HOM05D005230 ORTHO05D006506 9.9e-06 55.8 98 38.8


User provided reference genes

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