Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.3e-290 1001.5 499 100.0
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 6.0e-283 976.9 499 97.0
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.3e-282 975.7 499 97.0
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 4.4e-278 960.7 500 96.6
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 2.4e-276 954.9 507 94.9
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 5.1e-274 947.2 511 93.7
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 2.0e-254 882.1 520 85.8
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 2.0e-209 732.6 537 72.3
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 7.2e-204 714.1 532 71.2
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 2.3e-202 709.1 528 70.1
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 3.2e-199 698.7 537 69.8
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 4.5e-198 694.9 491 73.5
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 6.6e-197 691.0 524 69.3
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 5.6e-196 688.0 536 68.8
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 9.5e-196 687.2 508 70.3
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 4.7e-195 684.9 503 70.4
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 6.1e-195 684.5 527 69.3
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 2.6e-193 679.1 497 71.4
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 2.6e-193 679.1 508 69.1
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 9.8e-193 677.2 506 70.0
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 3.2e-191 672.2 518 67.8
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 4.1e-191 671.8 504 69.4
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 7.0e-191 671.0 525 67.2
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 1.2e-190 670.2 507 68.2
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 2.0e-190 669.5 552 65.8
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 2.0e-190 669.5 507 69.0
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 2.7e-190 669.1 456 73.7
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 4.6e-190 668.3 509 68.4
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 6.0e-190 667.9 512 68.9
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 7.8e-190 667.5 481 71.5
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 7.8e-190 667.5 515 69.7
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 1.0e-189 667.2 518 67.4
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 5.0e-189 664.8 422 76.3
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 8.6e-189 664.1 494 70.2
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 1.1e-188 663.7 532 63.3
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 1.9e-188 662.9 477 69.4
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 1.9e-188 662.9 533 66.0
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 1.6e-187 659.8 511 67.3
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 6.2e-187 657.9 510 68.0
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 8.0e-187 657.5 421 77.2
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 1.8e-186 656.4 447 72.5
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 2.3e-186 656.0 521 65.6
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 3.1e-186 655.6 443 73.6
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 6.8e-186 654.4 497 67.6
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 1.5e-185 653.3 516 66.9
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 5.8e-185 651.4 520 65.8
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 3.7e-184 648.7 507 66.7
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 1.9e-183 646.4 492 67.3
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 3.2e-183 645.6 488 68.6
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 4.1e-183 645.2 502 66.1
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 4.1e-183 645.2 492 67.3
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 4.1e-183 645.2 516 65.5
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 4.1e-183 645.2 422 76.1
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 7.1e-183 644.4 506 67.2
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 2.7e-182 642.5 500 67.4
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 6.0e-182 641.3 466 71.2
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 1.0e-181 640.6 479 67.4
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.0e-181 640.6 503 65.0
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 3.0e-181 639.0 464 68.8
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 3.0e-181 639.0 496 66.7
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 6.6e-181 637.9 510 65.1
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 1.1e-180 637.1 450 71.1
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 1.5e-180 636.7 507 65.7
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 1.9e-180 636.3 453 70.9
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 2.5e-180 636.0 476 69.3
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 2.5e-180 636.0 476 69.3
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 4.3e-180 635.2 422 74.4
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 4.3e-180 635.2 499 66.3
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 4.3e-180 635.2 499 66.3
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 4.3e-180 635.2 520 65.2
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 5.6e-180 634.8 395 78.0
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 9.5e-180 634.0 432 72.2
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 1.2e-179 633.6 513 65.3
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 1.6e-179 633.3 424 73.8
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 2.1e-179 632.9 514 65.0
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 2.1e-179 632.9 514 65.0
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 3.6e-179 632.1 509 65.0
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 3.6e-179 632.1 509 65.0
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 3.6e-179 632.1 461 68.8
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 4.7e-179 631.7 487 67.1
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 6.2e-179 631.3 509 65.0
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 8.1e-179 630.9 514 64.4
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 8.1e-179 630.9 467 68.7
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 1.1e-178 630.6 520 64.2
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 2.3e-178 629.4 481 66.1
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 3.1e-178 629.0 429 72.0
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 5.2e-178 628.2 515 65.2
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 1.2e-177 627.1 424 72.9
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 1.5e-177 626.7 453 69.8
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 1.5e-177 626.7 515 63.9
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 4.4e-177 625.2 422 74.4
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 2.9e-176 622.5 437 69.6
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 3.7e-176 622.1 520 62.9
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 1.9e-175 619.8 492 63.2
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 4.1e-175 618.6 506 63.8
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 4.1e-175 618.6 481 65.3
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 9.2e-175 617.5 504 63.7
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 9.2e-175 617.5 481 64.9
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 2.1e-174 616.3 421 71.7
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 3.5e-174 615.5 385 78.4
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 6.6e-173 611.3 465 69.5
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 6.6e-173 611.3 557 59.2
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 3.6e-171 605.5 563 59.1
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 5.8e-169 598.2 444 69.8
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 8.4e-168 594.3 435 67.8
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 1.4e-167 593.6 493 61.9
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 1.7e-165 586.6 519 62.2
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 9.6e-164 580.9 425 69.6
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 4.0e-162 575.5 575 56.7
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 3.4e-161 572.4 421 66.3
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 1.6e-158 563.5 508 60.0
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 2.5e-156 556.2 479 62.2
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 4.8e-155 552.0 518 58.5
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 5.3e-154 548.5 507 59.4
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 2.6e-153 546.2 418 64.4
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 5.8e-153 545.0 372 68.5
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 1.3e-152 543.9 434 61.1
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 1.7e-152 543.5 520 54.8
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 4.9e-152 542.0 523 54.1
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.4e-151 540.4 439 60.4
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.9e-151 540.0 492 56.1
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 5.4e-151 538.5 453 63.8
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 4.3e-148 528.9 451 62.7
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 9.6e-148 527.7 513 56.1
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 4.8e-147 525.4 429 64.8
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 1.4e-146 523.9 503 55.1
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 5.3e-146 521.9 469 57.8
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 1.5e-145 520.4 506 57.9
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 2.6e-145 519.6 435 63.7
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 2.6e-145 519.6 355 72.1
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 5.5e-143 511.9 395 65.8
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 9.6e-140 501.1 461 60.1
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 1.0e-136 491.1 404 65.8
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 2.2e-136 490.0 518 55.0
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 3.2e-135 486.1 372 65.9
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 4.3e-132 475.7 435 59.8
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 9.7e-132 474.6 411 61.8
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 2.2e-131 473.4 386 64.0
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 4.8e-131 472.2 356 66.9
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.1e-130 471.1 408 61.0
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 5.9e-129 465.3 492 52.0
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 3.8e-128 462.6 392 61.7
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 1.1e-127 461.1 360 65.0
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 3.3e-124 449.5 336 68.5
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 2.8e-115 419.9 379 61.5
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.3e-112 411.0 367 57.8
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 8.5e-112 408.3 363 60.3
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 5.9e-105 385.6 281 68.7
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 6.5e-104 382.1 442 52.5
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 5.0e-88 329.3 210 75.2
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 3.0e-85 320.1 447 42.3
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 1.6e-70 271.2 288 55.9
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 8.1e-70 268.9 272 54.8
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 2.3e-64 250.8 145 81.4
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 8.6e-64 248.8 267 56.6
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 6.8e-61 239.2 193 59.1
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 1.2e-60 238.4 323 49.8
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 1.9e-58 231.1 155 72.3
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 2.0e-52 211.1 408 34.6
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 5.8e-52 209.5 160 60.6
FAN23G1809 Fragaria x ananassa HOM05D030250 ORTHO05D004552 5.1e-48 196.4 107 96.3
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 1.1e-47 195.3 204 58.3
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 2.1e-46 191.0 497 31.0
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 1.4e-42 178.3 103 77.7
FAN20G2717 Fragaria x ananassa HOM05D030250 ORTHO05D004552 8.1e-30 136.0 112 71.4
FAN23G0554 Fragaria x ananassa HOM05D030250 ORTHO05D004552 2.4e-29 134.4 112 70.5
Glyma.15G171700 Glycine max HOM05D004042 ORTHO05D004552 4.2e-18 97.1 51 86.3
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 3.6e-17 94.0 183 31.1
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 6.1e-17 93.2 51 80.4
Lalb_Chr11g0074531 Lupinus albus HOM05D004042 ORTHO05D004552 3.9e-16 90.5 49 83.7
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 4.8e-14 83.6 232 28.4
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 3.1e-13 80.9 116 45.7
AUR62029035 Chenopodium quinoa HOM05D004042 ORTHO05D004552 7.2e-10 69.7 39 82.1
Sabra18G0058500 Salix brachista HOM05D004042 ORTHO05D004552 7.2e-10 69.7 106 40.6
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 2.7e-09 67.8 63 46.0
PSO339G6631 Papaver somniferum HOM05D002947 ORTHO05D037275 8.2e-06 56.2 43 60.5


User provided reference genes

Program Settings