Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G1408 Fragaria x ananassa HOM05D005513 ORTHO05D006848 4.4e-189 664.5 334 100.0
FvH4_1g00490 Fragaria vesca HOM05D005513 ORTHO05D006848 5.8e-173 610.9 334 93.1
FAN26G1480 Fragaria x ananassa HOM05D005513 ORTHO05D006848 1.3e-172 609.8 334 92.2
FAN23G0174 Fragaria x ananassa HOM05D005513 ORTHO05D006848 8.3e-172 607.1 334 91.9
RcHm_v2.0_Chr2g0085091 Rosa chinensis HOM05D005513 ORTHO05D006848 2.0e-165 585.9 334 88.3
Prupe.7G267200 Prunus persica HOM05D005513 ORTHO05D006848 4.9e-156 554.7 334 82.6
Manes.05G132000 Manihot esculenta HOM05D005513 ORTHO05D006848 1.1e-144 516.9 334 76.6
Cfa015273 Carpinus fangiana HOM05D005513 ORTHO05D006848 4.8e-143 511.5 334 76.3
Atru.chr4.1482 Acer truncatum HOM05D005513 ORTHO05D006848 1.1e-142 510.4 334 75.4
QL10p057731 Quercus lobata HOM05D005513 ORTHO05D006848 7.6e-141 504.2 333 75.4
Ciclev10021262m.g Citrus clementina HOM05D005513 ORTHO05D006848 1.7e-140 503.1 334 74.6
CANSAT56G3287 Cannabis sativa HOM05D005513 ORTHO05D006848 1.9e-139 499.6 335 75.5
Cpa.g.sc343.3 Carica papaya HOM05D005513 ORTHO05D006848 1.9e-139 499.6 334 75.7
Sabra19G0110200 Salix brachista HOM05D005513 ORTHO05D006848 2.5e-139 499.2 328 75.9
Duzib151G0764 Durio zibethinus HOM05D005513 ORTHO05D006848 3.2e-139 498.8 334 75.4
Nn7g37504 Nelumbo nucifera HOM05D005513 ORTHO05D006848 3.2e-139 498.8 334 74.3
Sed0010820 Sechium edule HOM05D005513 ORTHO05D006848 4.2e-139 498.4 334 73.7
CiPaw.01G170000 Carya illinoinensis HOM05D005513 ORTHO05D006848 2.7e-138 495.7 334 72.8
Potri.019G099100 Populus trichocarpa HOM05D005513 ORTHO05D006848 1.0e-137 493.8 328 75.3
GSVIVG01038190001 Vitis vinifera HOM05D005513 ORTHO05D006848 1.8e-137 493.0 335 73.7
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 3.0e-137 492.3 325 75.1
Gohir.D10G121000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 5.1e-137 491.5 334 73.7
Gorai.011G132900 Gossypium raimondii HOM05D005513 ORTHO05D006848 5.1e-137 491.5 334 73.7
Thecc.04G162400 Theobroma cacao HOM05D005513 ORTHO05D006848 5.1e-137 491.5 334 74.9
MD15G1148400 Malus domestica HOM05D005513 ORTHO05D006848 6.7e-137 491.1 303 81.2
TAR362G0948 Trochodendron aralioides HOM05D005513 ORTHO05D006848 6.7e-137 491.1 334 73.1
PGR042G2305 Punica granatum HOM05D005513 ORTHO05D006848 1.1e-136 490.3 336 73.8
Actinidia11441 Actinidia chinensis HOM05D005513 ORTHO05D006848 5.7e-136 488.0 347 71.8
Gohir.A10G146000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 1.3e-135 486.9 334 72.8
CSS0036954 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 2.8e-135 485.7 335 72.8
COL.COLO4_08197 Corchorus olitorius HOM05D005513 ORTHO05D006848 4.1e-134 481.9 345 71.9
vmacro15699 Vaccinium macrocarpon HOM05D005513 ORTHO05D006848 1.5e-133 479.9 346 69.9
TWI38G0850 Tripterygium wilfordii HOM05D005513 ORTHO05D006848 4.5e-133 478.4 339 70.5
QL10p057421 Quercus lobata HOM05D005513 ORTHO05D006848 7.6e-133 477.6 391 64.7
Sed0015185 Sechium edule HOM05D005513 ORTHO05D006848 1.0e-132 477.2 326 71.8
VMungo0251G3259 Vigna mungo HOM05D005513 ORTHO05D006848 5.0e-132 474.9 334 71.9
Nitab4.5_0001936g0090 Nicotiana tabacum HOM05D005513 ORTHO05D006848 6.5e-132 474.6 337 71.8
PSO675G7310 Papaver somniferum HOM05D005513 ORTHO05D006848 6.5e-132 474.6 336 69.6
Phvul.003G059600 Phaseolus vulgaris HOM05D005513 ORTHO05D006848 6.5e-132 474.6 334 71.3
arahy.Tifrunner.gnm1.ann1.GWB5D5 Arachis hypogaea HOM05D005513 ORTHO05D006848 8.4e-132 474.2 334 70.7
Cc09_g04220 Coffea canephora HOM05D005513 ORTHO05D006848 1.1e-131 473.8 320 73.8
Migut.F01838 Erythranthe guttata HOM05D005513 ORTHO05D006848 1.1e-131 473.8 339 70.5
Glyma.07G206300 Glycine max HOM05D005513 ORTHO05D006848 1.1e-131 473.8 335 69.6
Eucgr.L00024 Eucalyptus grandis HOM05D005513 ORTHO05D006848 1.9e-131 473.0 336 71.1
Lalb_Chr16g0384361 Lupinus albus HOM05D005513 ORTHO05D006848 1.9e-131 473.0 336 70.8
Ca_18624_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 2.5e-131 472.6 334 70.4
Atru.BG.100.p Acer truncatum HOM05D005513 ORTHO05D006848 3.2e-131 472.2 303 76.6
SalBow3G2273 Salvia bowleyana HOM05D005513 ORTHO05D006848 3.2e-131 472.2 339 71.1
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 4.2e-131 471.9 337 72.4
Lj4g0013603 Lotus japonicus HOM05D005513 ORTHO05D006848 9.3e-131 470.7 337 70.0
Peaxi162Scf00544g00118 Petunia axillaris HOM05D005513 ORTHO05D006848 1.2e-130 470.3 331 72.8
arahy.Tifrunner.gnm1.ann1.GC3WT6 Arachis hypogaea HOM05D005513 ORTHO05D006848 1.6e-130 469.9 334 69.8
Medtr4g087590 Medicago truncatula HOM05D005513 ORTHO05D006848 1.6e-130 469.9 334 70.1
Lsat_1_v5_gn_2_40261 Lactuca sativa HOM05D005513 ORTHO05D006848 2.1e-130 469.5 340 70.6
CAN.G1579.15 Capsicum annuum HOM05D005513 ORTHO05D006848 3.5e-130 468.8 337 71.5
CAN.G2177.12 Capsicum annuum HOM05D005513 ORTHO05D006848 3.5e-130 468.8 337 71.8
Glyma.02G138700 Glycine max HOM05D005513 ORTHO05D006848 1.8e-129 466.5 336 68.5
CsaV3_6G032350 Cucumis sativus L. HOM05D005513 ORTHO05D006848 2.3e-129 466.1 334 71.0
Nitab4.5_0008882g0020 Nicotiana tabacum HOM05D005513 ORTHO05D006848 5.1e-129 464.9 337 70.0
MSTRG.8188 Avicennia marina HOM05D005513 ORTHO05D006848 6.7e-129 464.5 339 69.3
PGSC0003DMG400004444 Solanum tuberosum HOM05D005513 ORTHO05D006848 6.7e-129 464.5 337 70.9
PSO541G5416 Papaver somniferum HOM05D005513 ORTHO05D006848 2.5e-128 462.6 336 68.8
TPR.G23516 Trifolium pratense HOM05D005513 ORTHO05D006848 3.3e-128 462.2 320 71.2
Psat7g119320 Pisum sativum HOM05D005513 ORTHO05D006848 1.3e-127 460.3 320 71.2
Sopen12g019010 Solanum pennellii HOM05D005513 ORTHO05D006848 1.3e-127 460.3 338 69.8
HanXRQChr10g0285921 Helianthus annuus HOM05D005513 ORTHO05D006848 1.8e-126 456.4 335 69.3
EL10Ac3g06111 Beta vulgaris HOM05D005513 ORTHO05D006848 2.4e-126 456.1 336 67.6
Aqoxy2G04162 Aquilegia oxysepala HOM05D005513 ORTHO05D006848 4.1e-126 455.3 326 68.1
RhsimUnG0015400 Rhododendron simsii HOM05D005513 ORTHO05D006848 5.3e-126 454.9 369 64.8
Oeu057533.3 Olea europaea HOM05D005513 ORTHO05D006848 1.3e-124 450.3 357 65.3
CAN.G575.103 Capsicum annuum HOM05D005513 ORTHO05D006848 2.2e-124 449.5 336 69.6
Hund12358 Selenicereus undatus HOM05D005513 ORTHO05D006848 2.9e-124 449.1 333 66.4
CSS0028849 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 3.8e-124 448.7 303 74.3
Eucgr.G01603 Eucalyptus grandis HOM05D005513 ORTHO05D006848 5.0e-124 448.4 336 68.8
ATR0743G005 Amborella trichopoda HOM05D005513 ORTHO05D006848 6.5e-124 448.0 334 66.2
MELO3C011447.2 Cucumis melo HOM05D005513 ORTHO05D006848 6.5e-124 448.0 345 67.0
THA.LOC104801693 Tarenaya hassleriana HOM05D005513 ORTHO05D006848 8.5e-124 447.6 322 67.4
AUR62002417 Chenopodium quinoa HOM05D005513 ORTHO05D006848 1.1e-123 447.2 329 67.5
AUR62023772 Chenopodium quinoa HOM05D005513 ORTHO05D006848 1.9e-123 446.4 329 67.5
Rhsim02G0085900 Rhododendron simsii HOM05D005513 ORTHO05D006848 4.2e-123 445.3 387 61.8
Peaxi162Scf00544g00117 Petunia axillaris HOM05D005513 ORTHO05D006848 1.2e-122 443.7 334 67.7
Ca_18630_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 2.7e-122 442.6 302 71.9
Aa31LG3G16700 Aethionema arabicum HOM05D005513 ORTHO05D006848 1.4e-121 440.3 322 67.4
AL6G20970 Arabidopsis lyrata HOM05D005513 ORTHO05D006848 5.1e-121 438.3 322 66.1
Thhalv10014198m.g Eutrema salsugineum HOM05D005513 ORTHO05D006848 1.3e-119 433.7 328 65.2
Sp6g32980 Schrenkiella parvula HOM05D005513 ORTHO05D006848 2.8e-119 432.6 328 65.2
BcaB05g21485 Brassica carinata HOM05D005513 ORTHO05D006848 8.2e-119 431.0 322 66.8
C02p04480 Brassica napus HOM05D005513 ORTHO05D006848 8.2e-119 431.0 322 66.8
CARHR202830 Cardamine hirsuta HOM05D005513 ORTHO05D006848 1.8e-118 429.9 323 66.3
CAN.G2107.3 Capsicum annuum HOM05D005513 ORTHO05D006848 2.4e-118 429.5 318 70.4
ECA238G0802 Erigeron canadensis HOM05D005513 ORTHO05D006848 2.4e-118 429.5 312 70.8
A02p00500 Brassica napus HOM05D005513 ORTHO05D006848 4.1e-118 428.7 322 66.5
Carub.0006s0894 Capsella rubella HOM05D005513 ORTHO05D006848 4.1e-118 428.7 323 65.3
BraA02t05034Z Brassica rapa HOM05D005513 ORTHO05D006848 6.9e-118 427.9 322 65.8
AT5G10460 Arabidopsis thaliana HOM05D005513 ORTHO05D006848 9.1e-118 427.6 322 64.9
BolC2t06408H Brassica oleracea HOM05D005513 ORTHO05D006848 1.2e-117 427.2 322 66.1
Os08g0542600 Oryza sativa ssp. japonica HOM05D005513 ORTHO05D006848 1.2e-117 427.2 320 65.3
HPP92_011686 Vanilla planifolia HOM05D005513 ORTHO05D006848 2.9e-116 422.5 320 65.6
HPP92_011691 Vanilla planifolia HOM05D005513 ORTHO05D006848 1.1e-115 420.6 320 65.3
Lj6A199G41 Lonicera japonica HOM05D005513 ORTHO05D006848 7.2e-115 417.9 306 69.6
Zm00001eb037350 Zea mays HOM05D005513 ORTHO05D006848 1.4e-113 413.7 326 64.1
BcaC03g13313 Brassica carinata HOM05D005513 ORTHO05D006848 3.0e-113 412.5 322 64.6
SEGI_26385 Sequoiadendron giganteum HOM05D005513 ORTHO05D006848 5.1e-113 411.8 335 60.0
ClCG08G010170 Citrullus lanatus HOM05D005513 ORTHO05D006848 7.0e-110 401.4 329 64.1
Dinv33223 Davidia involucrata HOM05D005513 ORTHO05D006848 8.0e-106 387.9 270 72.2
Sc19g0006410 Simmondsia chinensis HOM05D005513 ORTHO05D006848 2.3e-105 386.3 270 72.2
CAN.G2075.11 Capsicum annuum HOM05D005513 ORTHO05D006848 2.2e-103 379.8 336 61.0
SGA_v2.0_scaffold122G33215 Striga asiatica HOM05D005513 ORTHO05D006848 2.4e-102 376.3 365 56.4
Solyc12g038820.1 Solanum lycopersicum HOM05D005513 ORTHO05D006848 5.3e-102 375.2 271 70.1
CAN.G575.78 Capsicum annuum HOM05D005513 ORTHO05D006848 5.9e-101 371.7 270 70.7
Nitab4.5_0002604g0050 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.4e-97 360.5 313 61.3
Haze_01354 Corylus avellana HOM05D005513 ORTHO05D006848 1.1e-94 350.9 335 57.6
SMO119G0305 Selaginella moellendorffii HOM05D005513 ORTHO05D006848 5.9e-93 345.1 320 53.8
DCAR_005450 Daucus carota HOM05D005513 ORTHO05D006848 5.5e-91 338.6 247 68.4
Nitab4.5_0000241g0250 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.8e-89 333.6 274 64.2
Lj6A58T47 Lonicera japonica HOM05D005513 ORTHO05D006848 8.6e-84 314.7 223 71.3
CAN.G2075.13 Capsicum annuum HOM05D005513 ORTHO05D006848 1.7e-79 300.4 255 63.9
MCO04G248 Micromonas commoda HOM05D005513 ORTHO05D006848 4.0e-73 279.3 354 44.4
Medtr4g087600 Medicago truncatula HOM05D005513 ORTHO05D006848 3.4e-72 276.2 226 61.5
CAN.G181.20 Capsicum annuum HOM05D005513 ORTHO05D006848 8.6e-68 261.5 211 65.4
AUR62021707 Chenopodium quinoa HOM05D005513 ORTHO05D006848 1.4e-65 254.2 206 62.6
PRCOL_00005454 Prasinoderma coloniale HOM05D005513 ORTHO05D006848 1.1e-57 228.0 329 41.6
Gorai.004G148900 Gossypium raimondii HOM05D005513 ORTHO05D006848 8.9e-57 224.9 164 69.5
Lj6A193T36 Lonicera japonica HOM05D005513 ORTHO05D006848 4.4e-56 222.6 179 66.5
CAN.G1703.16 Capsicum annuum HOM05D005513 ORTHO05D006848 3.5e-53 213.0 142 76.8
CAN.G1565.3 Capsicum annuum HOM05D005513 ORTHO05D006848 3.0e-52 209.9 337 40.7
Cre14.g609300 Chlamydomonas reinhardtii HOM05D005513 ORTHO05D006848 5.2e-49 199.1 338 36.7
SHI25989 Sapria himalayana HOM05D000105 ORTHO05D000023 2.8e-42 176.8 190 50.5
Cc00_g04390 Coffea canephora HOM05D005513 ORTHO05D006848 1.1e-38 164.9 110 70.0
RcHm_v2.0_Chr2g0085051 Rosa chinensis HOM05D005513 ORTHO05D343180 2.3e-36 157.1 303 41.3
Lj6A58T48 Lonicera japonica HOM05D005513 ORTHO05D006848 3.9e-36 156.4 109 71.6
Lj6A203T27 Lonicera japonica HOM05D005513 ORTHO05D006848 1.6e-34 151.0 101 71.3
CAN.G1703.15 Capsicum annuum HOM05D005513 ORTHO05D006848 2.1e-29 134.0 91 72.5
Lj6A203G20 Lonicera japonica HOM05D005513 ORTHO05D006848 1.1e-25 121.7 178 41.6
CAN.G12630.1 Capsicum annuum HOM05D005513 ORTHO05D006848 7.6e-24 115.5 79 70.9
EL10Ac7g16782 Beta vulgaris HOM05D005513 ORTHO05D006848 6.7e-20 102.4 87 60.9
Lj6C203G2 Lonicera japonica HOM05D005513 ORTHO05D006848 3.7e-18 96.7 69 69.6
Lj6A230T44 Lonicera japonica HOM05D005513 ORTHO05D006848 2.7e-13 80.5 53 77.4
Lj6A192T18 Lonicera japonica HOM05D005513 ORTHO05D006848 5.1e-12 76.3 57 61.4
SHI25987 Sapria himalayana HOM05D005513 ORTHO05D006848 1.5e-11 74.7 49 63.3
SHI25988 Sapria himalayana HOM05D000105 ORTHO05D000023 4.3e-11 73.2 81 49.4


User provided reference genes

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