Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G1390 Fragaria x ananassa HOM05D003632 ORTHO05D017240 2.6e-151 539.3 399 100.0
FAN26G0474 Fragaria x ananassa HOM05D003632 ORTHO05D017240 2.0e-103 380.2 205 94.1
FvH4_7g03800 Fragaria vesca HOM05D003632 ORTHO05D005497 7.6e-63 245.4 221 64.7
FAN03G3001 Fragaria x ananassa HOM05D003632 ORTHO05D005497 7.6e-63 245.4 221 64.7
FAN28G0698 Fragaria x ananassa HOM05D003632 ORTHO05D017240 1.3e-62 244.6 152 86.8
FvH4_1g30291 Fragaria vesca HOM05D003632 ORTHO05D005497 2.2e-62 243.8 221 64.3
FAN19G1728 Fragaria x ananassa HOM05D003632 ORTHO05D005497 2.2e-62 243.8 221 64.3
FAN23G1588 Fragaria x ananassa HOM05D003632 ORTHO05D005497 2.9e-62 243.4 221 64.3
RcHm_v2.0_Chr3g0491051 Rosa chinensis HOM05D003632 ORTHO05D005497 8.4e-62 241.9 221 63.3
FAN28G2113 Fragaria x ananassa HOM05D003632 ORTHO05D005497 2.5e-61 240.4 221 63.3
FAN10G0294 Fragaria x ananassa HOM05D003632 ORTHO05D005497 7.1e-61 238.8 223 63.2
FAN06G1370 Fragaria x ananassa HOM05D006280 ORTHO05D007876 3.0e-59 233.4 210 64.8
FAN28G2388 Fragaria x ananassa HOM05D003632 ORTHO05D017240 1.5e-58 231.1 260 58.1
FAN26G0913 Fragaria x ananassa HOM05D003632 ORTHO05D005497 2.1e-57 227.3 230 60.4
MD00G1159400 Malus domestica HOM05D003632 ORTHO05D005497 3.1e-56 223.4 221 59.3
Prupe.7G271900 Prunus persica HOM05D003632 ORTHO05D005497 6.9e-56 222.2 220 59.5
MD00G1204700 Malus domestica HOM05D003632 ORTHO05D005497 3.4e-55 219.9 221 58.8
GSVIVG01013468001 Vitis vinifera HOM05D003632 ORTHO05D005497 1.4e-53 214.5 221 57.5
FAN10G0430 Fragaria x ananassa HOM05D003632 ORTHO05D005497 7.2e-53 212.2 177 68.4
CSS0037547 Camellia sinensis var. sinensis HOM05D003632 ORTHO05D005497 1.6e-52 211.1 221 55.2
FAN06G1218 Fragaria x ananassa HOM05D003632 ORTHO05D005497 3.5e-52 209.9 171 69.0
Dinv03487 Davidia involucrata HOM05D003632 ORTHO05D005497 4.6e-52 209.5 221 55.2
QL02p016456 Quercus lobata HOM05D003632 ORTHO05D005497 4.6e-52 209.5 221 55.7
CANSAT25G0240 Cannabis sativa HOM05D003632 ORTHO05D005497 7.9e-52 208.8 221 56.1
CiPaw.08G079400 Carya illinoinensis HOM05D003632 ORTHO05D005497 7.9e-52 208.8 221 55.7
COL.COLO4_04620 Corchorus olitorius HOM05D003632 ORTHO05D005497 7.9e-52 208.8 221 55.7
CANSAT01G2380 Cannabis sativa HOM05D003632 ORTHO05D005497 1.3e-51 208.0 221 56.1
TAR381G0543 Trochodendron aralioides HOM05D003632 ORTHO05D005497 1.3e-51 208.0 221 56.1
Potri.014G149200 Populus trichocarpa HOM05D003632 ORTHO05D005497 1.8e-51 207.6 221 55.2
Cfa014172 Carpinus fangiana HOM05D003632 ORTHO05D005497 3.0e-51 206.8 221 54.8
LjContig00222g0019593 Lotus japonicus HOM05D003632 ORTHO05D005497 3.9e-51 206.5 221 53.8
Gohir.A01G101300 Gossypium hirsutum HOM05D003632 ORTHO05D005497 5.1e-51 206.1 221 54.8
Gohir.D01G086200 Gossypium hirsutum HOM05D003632 ORTHO05D005497 5.1e-51 206.1 221 54.8
Medtr5g007380 Medicago truncatula HOM05D003632 ORTHO05D005497 6.7e-51 205.7 221 53.4
Lalb_Chr09g0320141 Lupinus albus HOM05D003632 ORTHO05D005497 1.1e-50 204.9 221 52.9
TPR.G38003 Trifolium pratense HOM05D003632 ORTHO05D005497 1.1e-50 204.9 221 53.4
MELO3C008771.2 Cucumis melo HOM05D003632 ORTHO05D005497 1.5e-50 204.5 221 54.3
Atru.chr13.15 Acer truncatum HOM05D003632 ORTHO05D005497 1.9e-50 204.1 221 53.4
CsaV3_2G009400 Cucumis sativus L. HOM05D003632 ORTHO05D005497 1.9e-50 204.1 221 54.8
Gorai.002G111600 Gossypium raimondii HOM05D003632 ORTHO05D005497 1.9e-50 204.1 221 54.3
Potri.002G235700 Populus trichocarpa HOM05D003632 ORTHO05D005497 1.9e-50 204.1 221 54.3
Thecc.08G097100 Theobroma cacao HOM05D003632 ORTHO05D005497 3.3e-50 203.4 221 55.2
CDE06G0366 Ceratophyllum demersum HOM05D003632 ORTHO05D005497 7.4e-50 202.2 221 53.8
Duzib093G0207 Durio zibethinus HOM05D003632 ORTHO05D005497 7.4e-50 202.2 221 52.9
Actinidia15538 Actinidia chinensis HOM05D003632 ORTHO05D005497 9.7e-50 201.8 221 52.5
arahy.Tifrunner.gnm1.ann1.LR79EL Arachis hypogaea HOM05D003632 ORTHO05D005497 9.7e-50 201.8 221 52.0
Lj5C162T4 Lonicera japonica HOM05D003632 ORTHO05D005497 1.3e-49 201.4 221 52.9
arahy.Tifrunner.gnm1.ann1.WPQ8T0 Arachis hypogaea HOM05D003632 ORTHO05D005497 1.6e-49 201.1 221 52.0
Sed0011503 Sechium edule HOM05D003632 ORTHO05D005497 1.6e-49 201.1 221 53.8
CDE07G1872 Ceratophyllum demersum HOM05D003632 ORTHO05D005497 2.2e-49 200.7 221 53.4
Ca_24435_v3 Cicer arietinum L. HOM05D003632 ORTHO05D005497 4.8e-49 199.5 221 52.0
Ciclev10000050m.g Citrus clementina HOM05D003632 ORTHO05D005497 4.8e-49 199.5 221 52.5
Haze_22896 Corylus avellana HOM05D003632 ORTHO05D005497 4.8e-49 199.5 221 53.8
Glyma.01G233300 Glycine max HOM05D003632 ORTHO05D005497 4.8e-49 199.5 221 52.5
Duzib248G0791 Durio zibethinus HOM05D003632 ORTHO05D005497 6.3e-49 199.1 221 52.9
TWI38G0156 Tripterygium wilfordii HOM05D003632 ORTHO05D005497 6.3e-49 199.1 221 53.4
Eucgr.F03633 Eucalyptus grandis HOM05D003632 ORTHO05D005497 1.4e-48 198.0 221 51.1
TWI63G1168 Tripterygium wilfordii HOM05D003632 ORTHO05D005497 1.4e-48 198.0 221 52.9
Glyma.11G009500 Glycine max HOM05D003632 ORTHO05D005497 1.8e-48 197.6 221 52.0
Migut.D01195 Erythranthe guttata HOM05D003632 ORTHO05D005497 3.1e-48 196.8 221 52.5
Nn6g31540 Nelumbo nucifera HOM05D003632 ORTHO05D005497 9.0e-48 195.3 221 52.9
Manes.05G198000 Manihot esculenta HOM05D003632 ORTHO05D005497 1.2e-47 194.9 221 52.0
PSO541G6510 Papaver somniferum HOM05D003632 ORTHO05D005497 2.0e-47 194.1 221 52.0
PSO675G5232 Papaver somniferum HOM05D003632 ORTHO05D005497 2.0e-47 194.1 221 52.0
EL10As5g23474 Beta vulgaris HOM05D003632 ORTHO05D005497 2.6e-47 193.7 222 52.7
DCAR_003535 Daucus carota HOM05D003632 ORTHO05D005497 2.6e-47 193.7 221 51.1
Phvul.002G040800 Phaseolus vulgaris HOM05D003632 ORTHO05D005497 2.6e-47 193.7 221 51.1
VMungo1215G1560 Vigna mungo HOM05D003632 ORTHO05D005497 2.6e-47 193.7 221 51.1
Rhsim02G0142400 Rhododendron simsii HOM05D003632 ORTHO05D005497 5.9e-47 192.6 221 52.5
Ah.11g049790 Amaranthus hybridus HOM05D003632 ORTHO05D005497 7.7e-47 192.2 221 52.0
vmacro15971 Vaccinium macrocarpon HOM05D003632 ORTHO05D005497 7.7e-47 192.2 221 52.5
MSTRG.9366 Avicennia marina HOM05D003632 ORTHO05D005497 1.3e-46 191.4 221 51.6
Cc04_g05970 Coffea canephora HOM05D003632 ORTHO05D005497 1.3e-46 191.4 221 51.1
PSO017G4161 Papaver somniferum HOM05D003632 ORTHO05D005497 1.7e-46 191.0 221 52.0
THA.LOC104806863 Tarenaya hassleriana HOM05D003632 ORTHO05D005497 2.2e-46 190.7 221 51.6
MBI01_g09379_MAGBIO Magnolia biondii HOM05D003632 ORTHO05D005497 2.9e-46 190.3 213 53.5
BcaB07g31079 Brassica carinata HOM05D003632 ORTHO05D005497 3.8e-46 189.9 221 51.6
BcaNung05247 Brassica carinata HOM05D003632 ORTHO05D005497 3.8e-46 189.9 221 51.6
Psat2g189160 Pisum sativum HOM05D003632 ORTHO05D005497 5.0e-46 189.5 221 50.2
ATR0605G213 Amborella trichopoda HOM05D003632 ORTHO05D005497 6.5e-46 189.1 221 50.7
A09p19660 Brassica napus HOM05D003632 ORTHO05D005497 8.5e-46 188.7 221 51.6
Os06g0625400 Oryza sativa ssp. japonica HOM05D003632 ORTHO05D005497 1.1e-45 188.3 221 49.8
HPP92_022034 Vanilla planifolia HOM05D003632 ORTHO05D005497 1.4e-45 188.0 221 50.7
BcaC04g21997 Brassica carinata HOM05D003632 ORTHO05D005497 1.9e-45 187.6 221 51.1
C09p25020 Brassica napus HOM05D003632 ORTHO05D005497 1.9e-45 187.6 221 51.1
Rhsim09G0100400 Rhododendron simsii HOM05D003632 ORTHO05D005497 1.9e-45 187.6 235 49.4
PGSC0003DMG400014254 Solanum tuberosum HOM05D003632 ORTHO05D005497 2.5e-45 187.2 221 49.8
THA.LOC104813211 Tarenaya hassleriana HOM05D003632 ORTHO05D005497 2.5e-45 187.2 225 50.7
AL8G19100 Arabidopsis lyrata HOM05D003632 ORTHO05D005497 4.2e-45 186.4 221 51.1
AUR62011864 Chenopodium quinoa HOM05D003632 ORTHO05D005497 4.2e-45 186.4 221 52.0
Nitab4.5_0002450g0120 Nicotiana tabacum HOM05D003632 ORTHO05D005497 4.2e-45 186.4 225 48.0
PSO170G0589 Papaver somniferum HOM05D003632 ORTHO05D005497 4.2e-45 186.4 221 51.6
AT5G42390 Arabidopsis thaliana HOM05D003632 ORTHO05D005497 5.5e-45 186.0 221 50.7
ECA236G2986 Erigeron canadensis HOM05D003632 ORTHO05D005497 5.5e-45 186.0 221 49.8
Sopen03g037320 Solanum pennellii HOM05D003632 ORTHO05D005497 5.5e-45 186.0 221 49.8
Sp7g08050 Schrenkiella parvula HOM05D003632 ORTHO05D005497 7.2e-45 185.7 221 50.7
Solyc03g118430.3 Solanum lycopersicum HOM05D003632 ORTHO05D005497 7.2e-45 185.7 221 49.3
BolC9t55396H Brassica oleracea HOM05D003632 ORTHO05D005497 9.4e-45 185.3 213 52.6
BraA09t37577Z Brassica rapa HOM05D003632 ORTHO05D005497 9.4e-45 185.3 213 52.6
CAN.G2827.2 Capsicum annuum HOM05D003632 ORTHO05D005497 9.4e-45 185.3 221 48.9
CAN.G843.30 Capsicum annuum HOM05D003632 ORTHO05D005497 9.4e-45 185.3 221 48.9
Zm00001eb387800 Zea mays HOM05D003632 ORTHO05D005497 9.4e-45 185.3 221 48.9
Carub.0008s0677 Capsella rubella HOM05D003632 ORTHO05D005497 1.2e-44 184.9 221 51.1
HanXRQChr15g0481001 Helianthus annuus HOM05D003632 ORTHO05D005497 1.2e-44 184.9 221 48.9
Nitab4.5_0002046g0120 Nicotiana tabacum HOM05D003632 ORTHO05D005497 1.2e-44 184.9 221 48.9
Lsat_1_v5_gn_7_31540 Lactuca sativa HOM05D003632 ORTHO05D005497 1.6e-44 184.5 221 48.4
Zm00001eb275640 Zea mays HOM05D003632 ORTHO05D005497 1.6e-44 184.5 221 48.9
PGR031G0531 Punica granatum HOM05D003632 ORTHO05D005497 2.1e-44 184.1 221 48.0
Hma1.2p1_0471F.1_g159520 Hydrangea macrophylla HOM05D003632 ORTHO05D005497 2.7e-44 183.7 222 50.5
AUR62024707 Chenopodium quinoa HOM05D003632 ORTHO05D005497 4.6e-44 183.0 221 51.1
FAN19G0570 Fragaria x ananassa HOM05D003632 ORTHO05D005497 4.6e-44 183.0 198 55.1
Thhalv10003133m.g Eutrema salsugineum HOM05D003632 ORTHO05D005497 6.1e-44 182.6 221 50.2
Peaxi162Scf00314g00434 Petunia axillaris HOM05D003632 ORTHO05D005497 7.9e-44 182.2 221 48.4
Aqoxy5G00932 Aquilegia oxysepala HOM05D003632 ORTHO05D005497 1.4e-43 181.4 221 48.9
CARHR285100 Cardamine hirsuta HOM05D003632 ORTHO05D005497 1.8e-43 181.0 221 50.2
Sabra14G0112500 Salix brachista HOM05D003632 ORTHO05D005497 1.8e-43 181.0 277 43.7
Aa31LG9G12540 Aethionema arabicum HOM05D003632 ORTHO05D005497 2.3e-43 180.6 226 49.1
Oeu015114.3 Olea europaea HOM05D003632 ORTHO05D005497 2.3e-43 180.6 214 50.5
Sc17g0000620 Simmondsia chinensis HOM05D003632 ORTHO05D005497 2.3e-43 180.6 221 49.8
Cpa.g.sc36.89 Carica papaya HOM05D003632 ORTHO05D005497 3.9e-43 179.9 175 57.7
Hund02917 Selenicereus undatus HOM05D003632 ORTHO05D005497 5.1e-43 179.5 221 48.4
HanXRQChr04g0119021 Helianthus annuus HOM05D003632 ORTHO05D005497 3.3e-42 176.8 222 47.3
unitig_0.g345 Utricularia gibba HOM05D003632 ORTHO05D005497 4.3e-42 176.4 221 47.5
SHI18575 Sapria himalayana HOM05D003632 ORTHO05D005497 5.3e-40 169.5 223 46.2
Lalb_Chr16g0376561 Lupinus albus HOM05D003632 ORTHO05D005497 2.9e-38 163.7 161 57.8
SalBow1G1353 Salvia bowleyana HOM05D003632 ORTHO05D005497 2.9e-38 163.7 176 50.6
CAN.G1425.12 Capsicum annuum HOM05D003632 ORTHO05D005497 8.5e-38 162.2 205 47.8
FvH4_7g00590 Fragaria vesca HOM05D003632 ORTHO05D046112 1.4e-37 161.4 199 52.8
FAN10G1660 Fragaria x ananassa HOM05D003632 ORTHO05D046112 2.5e-37 160.6 205 51.7
FAN03G0989 Fragaria x ananassa HOM05D003632 ORTHO05D005497 1.6e-36 157.9 177 54.2
Mapoly0022s0090 Marchantia polymorpha HOM05D003632 ORTHO05D005497 2.1e-36 157.5 221 42.1
AagrBONN_evm.TU.Sc2ySwM_117.2840 Anthoceros agrestis HOM05D003632 ORTHO05D005497 3.9e-35 153.3 221 42.5
FAN06G4184 Fragaria x ananassa HOM05D003632 ORTHO05D005497 6.7e-35 152.5 138 66.7
FvH4_7g00770 Fragaria vesca HOM05D003632 ORTHO05D002531 9.7e-34 148.7 90 84.4
Pp3c16_2100 Physcomitrium patens HOM05D003632 ORTHO05D005497 9.7e-34 148.7 221 41.2
FAN23G2090 Fragaria x ananassa HOM05D003632 ORTHO05D005497 6.3e-33 146.0 130 64.6
FvH4_1g28270 Fragaria vesca HOM05D003632 ORTHO05D005497 3.1e-32 143.7 133 61.7
FvH4_7g05210 Fragaria vesca HOM05D003632 ORTHO05D017240 1.6e-31 141.4 110 73.6
CBR_g32249 Chara braunii HOM05D003632 ORTHO05D005497 1.3e-25 121.7 233 34.8
FAN06G3471 Fragaria x ananassa HOM05D003632 ORTHO05D017240 6.1e-20 102.8 72 75.0
FAN27G3187 Fragaria x ananassa HOM05D003632 ORTHO05D005497 6.8e-19 99.4 104 54.8
FvH4_7g02670 Fragaria vesca HOM05D003632 ORTHO05D017240 1.2e-18 98.6 70 72.9
SMO117G0011 Selaginella moellendorffii HOM05D003632 ORTHO05D005497 2.9e-14 84.0 213 29.6
Cre17.g723250 Chlamydomonas reinhardtii HOM05D003632 ORTHO05D005497 3.8e-14 83.6 184 32.6
FvH4_7g01540 Fragaria vesca HOM05D003632 ORTHO05D005497 3.8e-14 83.6 88 59.1
FAN10G3171 Fragaria x ananassa HOM05D003632 ORTHO05D005497 8.5e-14 82.4 49 85.7
FAN06G0859 Fragaria x ananassa HOM05D003632 ORTHO05D046128 1.1e-13 82.0 53 75.5
FAN03G2152 Fragaria x ananassa HOM05D003632 ORTHO05D005497 6.8e-11 72.8 88 53.4
PRCOL_00001043 Prasinoderma coloniale HOM05D003632 ORTHO05D005497 2.8e-09 67.4 163 29.4
FvH4_7g01860 Fragaria vesca HOM05D003632 ORTHO05D046128 3.1e-08 63.9 40 77.5
MCO10G275 Micromonas commoda HOM05D003632 ORTHO05D005497 9.2e-08 62.4 117 29.9
arahy.Tifrunner.gnm1.ann1.Q7U2Y9 Arachis hypogaea HOM05D003632 ORTHO05D021463 1.6e-07 61.6 36 75.0
FvH4_7g01530 Fragaria vesca HOM05D003632 ORTHO05D021463 3.5e-07 60.5 60 55.0
FAN06G0417 Fragaria x ananassa HOM05D003632 ORTHO05D021463 3.5e-07 60.5 60 55.0
Aa31LG2G1380 Aethionema arabicum HOM05D003632 ORTHO05D017240 6.6e-06 56.2 49 59.2
Glyma.05G077034 Glycine max HOM05D003632 ORTHO05D021463 6.6e-06 56.2 36 66.7


User provided reference genes

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