Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 7.9e-107 390.6 216 100.0
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 3.8e-101 371.7 216 95.8
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 4.4e-97 358.2 216 93.5
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 5.7e-97 357.8 216 93.5
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.1e-95 353.6 217 93.1
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.0e-94 349.4 218 91.3
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 4.1e-71 271.9 178 84.8
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 1.9e-44 183.3 227 57.7
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 1.9e-44 183.3 225 56.0
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 4.7e-43 178.7 223 57.8
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 1.1e-42 177.6 223 60.1
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 3.1e-42 176.0 226 56.6
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 3.4e-41 172.6 230 58.3
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 4.4e-41 172.2 230 56.1
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 6.4e-40 168.3 226 50.9
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 1.1e-39 167.5 221 50.2
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 1.2e-38 164.1 225 53.8
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 1.6e-38 163.7 218 53.7
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 3.5e-38 162.5 219 53.9
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 3.5e-38 162.5 218 53.7
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 5.1e-37 158.7 226 53.1
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 4.3e-36 155.6 243 50.2
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 9.6e-36 154.5 219 51.1
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.6e-35 153.7 216 52.3
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 3.6e-35 152.5 223 50.7
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 8.1e-35 151.4 228 53.1
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 6.9e-34 148.3 221 49.8
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 9.0e-34 147.9 218 47.7
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 1.5e-33 147.1 222 55.9
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 1.5e-33 147.1 217 49.8
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 7.6e-33 144.8 227 49.8
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 7.6e-33 144.8 227 49.8
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 1.3e-32 144.1 223 48.9
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 2.9e-32 142.9 230 50.9
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 1.9e-31 140.2 230 51.7
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.4e-31 139.8 225 51.6
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 2.4e-31 139.8 231 50.2
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 2.4e-31 139.8 223 46.6
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 3.2e-31 139.4 223 47.1
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 3.2e-31 139.4 226 47.8
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 5.4e-31 138.7 223 49.8
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 5.4e-31 138.7 220 49.1
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 9.3e-31 137.9 223 46.6
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.2e-30 137.5 219 48.9
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 1.6e-30 137.1 226 48.7
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 1.6e-30 137.1 227 47.6
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 2.7e-30 136.3 220 47.3
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 2.7e-30 136.3 221 44.8
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 4.6e-30 135.6 231 47.6
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 7.9e-30 134.8 223 48.0
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 1.3e-29 134.0 225 47.6
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 1.8e-29 133.7 219 49.8
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 3.0e-29 132.9 228 51.3
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 5.1e-29 132.1 221 51.6
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 8.7e-29 131.3 217 46.5
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 8.7e-29 131.3 225 45.3
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 1.1e-28 131.0 224 46.0
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 1.9e-28 130.2 229 44.1
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 3.3e-28 129.4 223 44.4
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 1.3e-27 127.5 171 52.0
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 1.3e-27 127.5 223 51.1
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 2.1e-27 126.7 217 43.8
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.1e-27 126.7 225 50.2
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 2.8e-27 126.3 223 48.4
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 3.6e-27 125.9 234 45.3
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 3.6e-27 125.9 197 47.7
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 1.4e-26 124.0 221 45.2
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 1.4e-26 124.0 221 48.9
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 1.8e-26 123.6 232 46.6
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 2.4e-26 123.2 229 45.9
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 2.4e-26 123.2 221 49.3
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 3.1e-26 122.9 228 49.1
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 4.0e-26 122.5 223 46.2
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 5.3e-26 122.1 225 47.1
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 9.0e-26 121.3 225 47.6
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 1.5e-25 120.6 247 42.1
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 2.0e-25 120.2 223 42.2
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 2.6e-25 119.8 224 46.0
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 2.6e-25 119.8 225 48.0
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 3.4e-25 119.4 216 46.3
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 3.4e-25 119.4 215 45.6
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 4.5e-25 119.0 196 44.4
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 4.5e-25 119.0 228 44.3
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 1.3e-24 117.5 225 46.7
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 1.7e-24 117.1 218 42.7
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 1.7e-24 117.1 220 42.3
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 6.4e-24 115.2 226 41.2
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 8.4e-24 114.8 230 43.9
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 1.1e-23 114.4 226 41.2
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 1.1e-23 114.4 226 41.2
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 1.9e-23 113.6 234 46.2
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 3.2e-23 112.8 224 48.2
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 3.2e-23 112.8 218 43.6
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 4.2e-23 112.5 221 43.4
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 7.1e-23 111.7 221 43.4
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 1.2e-22 110.9 223 38.6
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 1.2e-22 110.9 223 38.6
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 2.7e-22 109.8 223 42.6
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 6.0e-22 108.6 221 42.5
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 6.0e-22 108.6 218 42.7
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 1.0e-21 107.8 221 40.3
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 1.3e-21 107.5 222 41.4
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 3.0e-21 106.3 221 40.7
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 3.0e-21 106.3 221 40.7
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 6.7e-21 105.1 221 40.3
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 6.7e-21 105.1 222 42.8
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 8.7e-21 104.8 228 46.5
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 1.5e-20 104.0 234 47.0
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 3.7e-19 99.4 226 37.2
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 4.8e-19 99.0 225 45.3
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 6.2e-19 98.6 219 44.7
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 1.4e-18 97.4 191 40.8
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 2.4e-18 96.7 154 46.8
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 3.1e-18 96.3 213 38.0
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 6.9e-18 95.1 189 41.3
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 6.9e-18 95.1 225 44.0
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 1.5e-17 94.0 192 40.1
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.5e-17 94.0 228 42.5
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 4.5e-17 92.4 223 38.6
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 5.8e-17 92.0 219 42.0
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 5.8e-17 92.0 223 40.4
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 5.8e-17 92.0 118 50.0
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 1.7e-16 90.5 218 41.7
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 2.2e-16 90.1 181 45.9
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 4.9e-16 89.0 227 39.6
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 6.5e-16 88.6 181 43.6
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 8.4e-16 88.2 213 37.1
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 8.4e-16 88.2 145 47.6
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 1.4e-15 87.4 181 45.9
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 2.5e-15 86.7 213 40.8
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 3.2e-15 86.3 226 40.3
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 5.5e-15 85.5 193 46.6
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 5.5e-15 85.5 216 38.0
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 7.1e-15 85.1 198 37.9
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 1.2e-14 84.3 224 34.4
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 1.2e-14 84.3 145 46.2
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.2e-14 84.3 219 34.2
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 2.1e-14 83.6 223 38.6
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 2.1e-14 83.6 226 34.1
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 2.7e-14 83.2 220 38.2
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 3.5e-14 82.8 221 37.6
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 6.0e-14 82.0 219 37.0
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 6.0e-14 82.0 213 39.9
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 1.8e-13 80.5 220 40.0
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 2.3e-13 80.1 183 39.3
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 2.3e-13 80.1 183 39.3
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 1.1e-12 77.8 223 35.0
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 1.5e-12 77.4 135 45.2
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 3.3e-12 76.3 229 36.2
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 4.3e-12 75.9 154 42.9
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 4.3e-12 75.9 112 46.4
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 7.4e-12 75.1 222 35.1
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 1.3e-11 74.3 197 37.1
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 2.8e-11 73.2 221 35.7
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 1.1e-10 71.2 188 37.2
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 4.1e-10 69.3 157 42.7
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 9.0e-10 68.2 162 35.2
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 2.0e-09 67.0 62 66.1
Ah.09g230900 Amaranthus hybridus HOM05D003644 ORTHO05D004305 3.4e-09 66.2 213 36.6
CARHR236630 Cardamine hirsuta HOM05D003644 ORTHO05D004305 3.4e-09 66.2 83 60.2
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 3.4e-09 66.2 143 46.2
Zm00001eb156860 Zea mays HOM05D003644 ORTHO05D004305 7.6e-09 65.1 196 34.2
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 1.3e-08 64.3 220 37.3
Rhsim05G0043500 Rhododendron simsii HOM05D003644 ORTHO05D004305 6.5e-08 62.0 233 30.9
unitig_578.g15927 Utricularia gibba HOM05D003644 ORTHO05D004305 1.1e-07 61.2 124 37.1
Zm00001eb360290 Zea mays HOM05D003644 ORTHO05D004305 1.1e-07 61.2 194 33.5
Oeu018442.1 Olea europaea HOM05D003644 ORTHO05D004305 2.5e-07 60.1 76 55.3
Os05g0559316 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 2.5e-07 60.1 81 45.7
AL7G23640 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 3.2e-07 59.7 132 40.9
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 5.5e-07 58.9 221 33.5
Nitab4.5_0002431g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 5.5e-07 58.9 110 47.3
HPP92_024624 Vanilla planifolia HOM05D003644 ORTHO05D004305 2.7e-06 56.6 220 32.3
BcaB03g16801 Brassica carinata HOM05D003644 ORTHO05D004305 3.6e-06 56.2 30 83.3
Psat7g014640 Pisum sativum HOM05D003644 ORTHO05D004305 4.6e-06 55.8 184 33.7


User provided reference genes

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