Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G1310 Fragaria x ananassa HOM05D007587 ORTHO05D009657 1.3e-59 232.6 103 100.0
FAN23G2556 Fragaria x ananassa HOM05D007587 ORTHO05D009657 3.2e-29 131.7 106 61.3
FAN26G0670 Fragaria x ananassa HOM05D007587 ORTHO05D009657 8.6e-27 123.6 55 94.5
Prupe.7G145500 Prunus persica HOM05D007587 ORTHO05D009657 2.9e-22 108.6 61 77.0
Dinv39924 Davidia involucrata HOM05D007587 ORTHO05D009657 4.2e-21 104.8 66 62.1
QL06p044263 Quercus lobata HOM05D007587 ORTHO05D009657 5.4e-21 104.4 52 78.8
Ciclev10027038m.g Citrus clementina HOM05D007587 ORTHO05D009657 9.2e-21 103.6 66 62.1
ECA238G1538 Erigeron canadensis HOM05D003002 ORTHO05D002276 1.6e-20 102.8 52 76.9
Manes.12G097400 Manihot esculenta HOM05D007587 ORTHO05D009657 3.5e-20 101.7 49 79.6
CSS0038445 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 4.6e-20 101.3 46 82.6
Thecc.01G045600 Theobroma cacao HOM05D007587 ORTHO05D009657 4.6e-20 101.3 57 73.7
Gohir.A11G188150 Gossypium hirsutum HOM05D007587 ORTHO05D009657 7.8e-20 100.5 46 82.6
Gohir.D11G194650 Gossypium hirsutum HOM05D007587 ORTHO05D009657 7.8e-20 100.5 46 82.6
Gorai.007G208100 Gossypium raimondii HOM05D007587 ORTHO05D009657 7.8e-20 100.5 46 82.6
Cpa.g.sc15.59 Carica papaya HOM05D007587 ORTHO05D009657 1.0e-19 100.1 46 82.6
Migut.H00502 Erythranthe guttata HOM05D007587 ORTHO05D009657 1.0e-19 100.1 54 70.4
Manes.13G132300 Manihot esculenta HOM05D007587 ORTHO05D009657 1.3e-19 99.8 71 57.7
Psat2g163680 Pisum sativum HOM05D007587 ORTHO05D009657 1.3e-19 99.8 71 56.3
Potri.005G130750 Populus trichocarpa HOM05D007587 ORTHO05D009657 1.3e-19 99.8 52 73.1
Solyc02g090080.1 Solanum lycopersicum HOM05D007587 ORTHO05D009657 3.0e-19 98.6 56 66.1
Psat0s261g0120 Pisum sativum HOM05D007587 ORTHO05D009657 3.9e-19 98.2 54 68.5
TPR.G29850 Trifolium pratense HOM05D007587 ORTHO05D009657 3.9e-19 98.2 49 77.6
TAR381G1104 Trochodendron aralioides HOM05D007587 ORTHO05D009657 3.9e-19 98.2 56 64.3
SalBow1G8004 Salvia bowleyana HOM05D007587 ORTHO05D009657 5.1e-19 97.8 54 66.7
Medtr5g018610 Medicago truncatula HOM05D007587 ORTHO05D009657 6.6e-19 97.4 68 58.8
COL.COLO4_22178 Corchorus olitorius HOM05D007587 ORTHO05D009657 8.7e-19 97.1 46 78.3
Lj2g0021293 Lotus japonicus HOM05D007587 ORTHO05D009657 3.3e-18 95.1 51 70.6
Atru.chr3.473 Acer truncatum HOM05D007587 ORTHO05D009657 4.3e-18 94.7 52 65.4
Cc07_g05380 Coffea canephora HOM05D007587 ORTHO05D009657 4.3e-18 94.7 51 68.6
Nitab4.5_0005594g0030 Nicotiana tabacum HOM05D007587 ORTHO05D009657 7.3e-18 94.0 52 67.3
Phvul.002G023800 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 7.3e-18 94.0 56 64.3
Lj7C15T6 Lonicera japonica HOM05D007587 ORTHO05D009657 1.6e-17 92.8 54 61.1
Lsat_1_v5_gn_2_87241 Lactuca sativa HOM05D007587 ORTHO05D009657 2.1e-17 92.4 45 75.6
Lsat_1_v5_gn_3_93981 Lactuca sativa HOM05D007587 ORTHO05D009657 2.8e-17 92.0 54 66.7
Glyma.16G143900 Glycine max HOM05D007587 ORTHO05D009657 1.4e-16 89.7 47 66.0
Glyma.11G061100 Glycine max HOM05D007587 ORTHO05D009657 1.8e-16 89.4 43 76.7
Potri.007G034000 Populus trichocarpa HOM05D007587 ORTHO05D009657 9.0e-16 87.0 52 61.5
Glyma.02G061500 Glycine max HOM05D007587 ORTHO05D009657 1.2e-15 86.7 47 66.0
Phvul.003G249500 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 4.4e-15 84.7 47 61.7
Glyma.19G074100 Glycine max HOM05D007587 ORTHO05D009657 5.8e-15 84.3 47 63.8
arahy.Tifrunner.gnm1.ann1.986LRW Arachis hypogaea HOM05D007587 ORTHO05D009657 1.3e-14 83.2 51 58.8
arahy.Tifrunner.gnm1.ann1.JQT6QK Arachis hypogaea HOM05D007587 ORTHO05D009657 1.3e-14 83.2 51 58.8
ClCG02G013040 Citrullus lanatus HOM05D007587 ORTHO05D009657 1.7e-14 82.8 56 55.4
Zm00001eb135300 Zea mays HOM05D007587 ORTHO05D009657 8.4e-14 80.5 58 50.0
Atru.chr13.897 Acer truncatum HOM05D007587 ORTHO05D009657 1.1e-13 80.1 53 52.8
CsaV3_2G017120 Cucumis sativus L. HOM05D007587 ORTHO05D009657 1.1e-13 80.1 50 58.0
Os12g0596101 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 1.9e-13 79.3 43 60.5
AagrBONN_evm.TU.Sc2ySwM_117.169 Anthoceros agrestis HOM05D007587 ORTHO05D009657 2.4e-13 79.0 52 53.8
GSVIVG01034787001 Vitis vinifera HOM05D007587 ORTHO05D009657 5.4e-13 77.8 57 43.9
CAN.G416.39 Capsicum annuum HOM05D007587 ORTHO05D009657 1.2e-12 76.6 58 44.8
MBI16_g05021_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 1.6e-12 76.3 63 41.3
PGSC0003DMG400004952 Solanum tuberosum HOM05D007587 ORTHO05D009657 2.1e-12 75.9 52 50.0
MBI16_g05020_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 2.7e-12 75.5 59 47.5
Actinidia29637 Actinidia chinensis HOM05D007587 ORTHO05D009657 4.6e-12 74.7 56 41.1
Zm00001eb052110 Zea mays HOM05D007587 ORTHO05D009657 4.6e-12 74.7 55 47.3
CSS0045179 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 6.0e-12 74.3 57 45.6
Manes.18G051550 Manihot esculenta HOM05D007587 ORTHO05D009657 6.0e-12 74.3 43 55.8
Nitab4.5_0015343g0010 Nicotiana tabacum HOM05D007587 ORTHO05D009657 6.0e-12 74.3 43 55.8
Sed0017528 Sechium edule HOM05D007587 ORTHO05D009657 6.0e-12 74.3 46 58.7
vmacro04607 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 6.0e-12 74.3 60 48.3
Migut.C00432 Erythranthe guttata HOM05D007587 ORTHO05D009657 1.0e-11 73.6 57 47.4
Potri.005G150300 Populus trichocarpa HOM05D007587 ORTHO05D009657 1.0e-11 73.6 43 55.8
vmacro04609 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 1.0e-11 73.6 60 48.3
CDE06G1347 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 1.3e-11 73.2 59 49.2
Nn5g27361 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.3e-11 73.2 43 55.8
QL02p001961 Quercus lobata HOM05D007587 ORTHO05D009657 1.3e-11 73.2 43 53.5
Rhsim07G0216100 Rhododendron simsii HOM05D007587 ORTHO05D009657 1.7e-11 72.8 43 53.5
Rhsim07G0216200 Rhododendron simsii HOM05D007587 ORTHO05D009657 1.7e-11 72.8 43 53.5
SalBow7G1850 Salvia bowleyana HOM05D007587 ORTHO05D009657 1.7e-11 72.8 55 47.3
vmacro04608 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 1.7e-11 72.8 59 47.5
Migut.O00867 Erythranthe guttata HOM05D007587 ORTHO05D009657 2.3e-11 72.4 57 45.6
Mapoly0026s0006 Marchantia polymorpha HOM05D007587 ORTHO05D009657 3.0e-11 72.0 52 46.2
TAR381G0827 Trochodendron aralioides HOM05D007587 ORTHO05D009657 3.9e-11 71.6 43 53.5
Cc10_g07830 Coffea canephora HOM05D007587 ORTHO05D009657 6.6e-11 70.9 43 55.8
Nn5g27362 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.1e-10 70.1 43 48.8
CiPaw.15G043600 Carya illinoinensis HOM05D007587 ORTHO05D009657 1.5e-10 69.7 43 53.5
Hma1.2p1_2651F.1_g326150 Hydrangea macrophylla HOM05D007587 ORTHO05D009657 1.5e-10 69.7 43 48.8
CiPaw.15G043500 Carya illinoinensis HOM05D007587 ORTHO05D009657 1.9e-10 69.3 43 53.5
Nn5g27360 Nelumbo nucifera HOM05D007587 ORTHO05D009657 2.5e-10 68.9 43 53.5
Cfa017911 Carpinus fangiana HOM05D007587 ORTHO05D009657 3.3e-10 68.6 43 48.8
Os03g0673700 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 3.3e-10 68.6 43 51.2
Nn4g24320 Nelumbo nucifera HOM05D007587 ORTHO05D009657 5.6e-10 67.8 43 53.5
Os03g0673400 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 5.6e-10 67.8 58 43.1
CDE04G0885 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 7.3e-10 67.4 51 43.1
Gohir.A01G124700 Gossypium hirsutum HOM05D007587 ORTHO05D009657 9.6e-10 67.0 47 44.7
Gohir.D01G112300 Gossypium hirsutum HOM05D007587 ORTHO05D009657 9.6e-10 67.0 47 44.7
Gorai.002G137200 Gossypium raimondii HOM05D007587 ORTHO05D009657 9.6e-10 67.0 47 44.7
Thecc.08G082100 Theobroma cacao HOM05D007587 ORTHO05D009657 9.6e-10 67.0 43 48.8
COL.COLO4_35374 Corchorus olitorius HOM05D007587 ORTHO05D009657 1.3e-09 66.6 43 48.8
Pp3c20_19960 Physcomitrium patens HOM05D007587 ORTHO05D009657 3.6e-09 65.1 48 54.2
CiPaw.01G029300 Carya illinoinensis HOM05D007587 ORTHO05D009657 6.2e-09 64.3 33 75.8
Pp3c24_89 Physcomitrium patens HOM05D007587 ORTHO05D009657 6.2e-09 64.3 48 52.1
CBR_g28808 Chara braunii HOM05D007587 ORTHO05D009657 1.4e-08 63.2 42 45.2
Pp3c19_1061 Physcomitrium patens HOM05D007587 ORTHO05D009657 5.8e-07 57.8 45 53.3
Pp3c19_1062 Physcomitrium patens HOM05D007587 ORTHO05D009657 2.2e-06 55.8 44 52.3


User provided reference genes

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