Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G1308 Fragaria x ananassa HOM05D022793 ORTHO05D200777 9.2e-209 729.9 359 100.0
FAN21G2558 Fragaria x ananassa HOM05D022793 ORTHO05D210703 6.7e-50 202.2 123 82.9
FAN09G3217 Fragaria x ananassa HOM05D022793 ORTHO05D006073 2.5e-33 147.1 75 97.3
FAN28G2710 Fragaria x ananassa HOM05D022793 ORTHO05D006073 2.8e-32 143.7 69 100.0
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 6.3e-16 89.4 63 71.4
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 6.3e-16 89.4 63 71.4
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 8.2e-16 89.0 63 71.4
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 1.1e-15 88.6 63 69.8
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.1e-15 88.6 63 69.8
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.1e-15 88.6 63 69.8
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 1.2e-14 85.1 63 66.7
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 2.7e-11 73.9 63 61.9
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 2.7e-11 73.9 63 61.9
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 8.0e-11 72.4 63 60.3
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 1.1e-09 68.6 63 57.1
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 3.3e-09 67.0 92 47.8
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 4.4e-09 66.6 63 57.1
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 5.7e-09 66.2 63 57.1
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 7.4e-09 65.9 63 57.1
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 7.4e-09 65.9 63 57.1
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 7.4e-09 65.9 63 57.1
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 7.4e-09 65.9 66 59.1
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 7.4e-09 65.9 63 58.7
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 7.4e-09 65.9 63 57.1
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 7.4e-09 65.9 63 55.6
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 7.4e-09 65.9 63 55.6
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 7.4e-09 65.9 63 57.1
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 7.4e-09 65.9 63 57.1
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 7.4e-09 65.9 63 57.1
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 7.4e-09 65.9 63 57.1
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 9.7e-09 65.5 63 55.6
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 9.7e-09 65.5 63 54.0
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.7e-08 64.7 122 40.2
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.7e-08 64.7 122 40.2
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.7e-08 64.7 122 40.2
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 1.7e-08 64.7 99 44.4
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 2.2e-08 64.3 63 55.6
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 2.2e-08 64.3 64 57.8
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 2.8e-08 63.9 75 52.0
FAN09G3713 Fragaria x ananassa HOM05D022793 ORTHO05D198746 2.8e-08 63.9 42 78.6
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 4.8e-08 63.2 112 43.8
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 4.8e-08 63.2 63 55.6
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 6.3e-08 62.8 117 39.3
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 8.2e-08 62.4 64 56.2
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.4e-07 61.6 108 40.7
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 1.8e-07 61.2 64 54.7
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.8e-07 61.2 122 39.3
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 1.8e-07 61.2 64 57.8
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 1.8e-07 61.2 64 54.7
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 2.4e-07 60.8 64 54.7
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 2.4e-07 60.8 64 54.7
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 3.1e-07 60.5 63 57.1
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 3.1e-07 60.5 64 54.7
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 4.1e-07 60.1 64 54.7
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 7.0e-07 59.3 68 50.0
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 7.0e-07 59.3 73 53.4
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 7.0e-07 59.3 63 52.4
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 7.0e-07 59.3 73 47.9
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 9.1e-07 58.9 73 53.4
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 9.1e-07 58.9 63 52.4
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.2e-06 58.5 63 50.8
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 1.6e-06 58.2 63 50.8
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 1.6e-06 58.2 63 54.0
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 1.6e-06 58.2 63 54.0
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 1.6e-06 58.2 63 54.0
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 1.6e-06 58.2 63 54.0
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 1.6e-06 58.2 63 54.0
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 1.6e-06 58.2 63 54.0
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 1.6e-06 58.2 63 54.0
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 1.6e-06 58.2 63 54.0
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 1.6e-06 58.2 63 54.0
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 1.6e-06 58.2 63 54.0
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 1.6e-06 58.2 63 54.0
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 1.6e-06 58.2 64 53.1
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 1.6e-06 58.2 64 53.1
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 2.0e-06 57.8 63 55.6
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 2.0e-06 57.8 73 53.4
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 2.0e-06 57.8 111 38.7
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 2.0e-06 57.8 111 38.7
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 2.0e-06 57.8 111 38.7
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 2.6e-06 57.4 63 54.0
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 3.5e-06 57.0 64 53.1
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 3.5e-06 57.0 64 53.1
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 5.9e-06 56.2 63 49.2
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 5.9e-06 56.2 63 49.2
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 7.7e-06 55.8 63 49.2


User provided reference genes

Program Settings