Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.1e-187 659.8 330 100.0
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.3e-182 642.1 330 97.6
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 1.1e-181 639.8 330 97.0
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.3e-181 638.3 330 96.7
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.6e-178 628.6 351 91.7
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 3.1e-171 605.1 330 91.5
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 2.8e-143 512.3 331 78.2
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 1.3e-111 407.1 323 64.1
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 7.1e-107 391.3 329 61.7
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 1.3e-103 380.6 329 59.6
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 3.7e-103 379.0 326 63.2
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 3.1e-102 375.9 328 61.6
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 5.3e-102 375.2 325 58.8
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.3e-100 370.5 332 59.6
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.3e-100 370.5 332 59.3
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 1.3e-100 370.5 329 59.9
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 1.7e-100 370.2 324 62.0
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 2.2e-100 369.8 326 59.8
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 1.1e-99 367.5 343 56.0
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.1e-99 367.5 332 58.7
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.4e-99 367.1 328 57.0
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 2.5e-99 366.3 329 57.4
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 4.2e-99 365.5 329 59.9
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 9.3e-99 364.4 332 57.5
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 1.6e-98 363.6 323 58.5
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 1.0e-97 360.9 326 56.4
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.8e-97 360.1 323 57.6
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 5.1e-97 358.6 328 57.3
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 3.3e-96 355.9 328 56.1
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 1.6e-95 353.6 328 57.3
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 3.7e-95 352.4 328 55.8
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 3.7e-95 352.4 329 56.2
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 1.1e-94 350.9 317 57.1
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.1e-94 350.9 325 55.7
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.4e-94 349.7 323 56.0
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.1e-94 349.4 328 55.8
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 3.1e-94 349.4 323 56.7
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 4.0e-94 349.0 324 54.6
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 6.9e-94 348.2 323 57.3
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 6.9e-94 348.2 325 57.8
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 6.9e-94 348.2 289 62.6
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 9.0e-94 347.8 329 57.1
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.0e-92 344.4 327 56.0
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 1.3e-92 344.0 328 54.0
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 1.7e-92 343.6 328 55.2
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 1.1e-91 340.9 332 57.5
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 1.1e-91 340.9 330 54.5
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 1.9e-91 340.1 330 54.5
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 4.2e-91 339.0 327 56.3
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 9.3e-91 337.8 237 73.0
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 9.3e-91 337.8 328 54.9
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 4.6e-90 335.5 297 55.9
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 7.9e-90 334.7 330 54.5
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 1.3e-89 334.0 328 53.4
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.3e-89 334.0 331 52.3
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 2.3e-89 333.2 328 53.0
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 2.3e-89 333.2 328 52.7
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 6.7e-89 331.6 323 56.3
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 2.5e-88 329.7 330 53.0
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 3.3e-88 329.3 258 64.7
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 3.3e-88 329.3 327 52.6
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 5.7e-88 328.6 329 53.8
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 9.7e-88 327.8 321 54.5
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 9.7e-88 327.8 328 52.7
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 9.7e-88 327.8 259 64.9
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 1.6e-87 327.0 318 54.7
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 1.6e-87 327.0 346 52.0
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 2.2e-87 326.6 331 53.2
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.8e-87 326.2 330 52.7
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.8e-87 326.2 330 52.7
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 4.8e-87 325.5 281 59.4
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 6.3e-87 325.1 331 55.0
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 8.2e-87 324.7 323 51.4
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 1.1e-86 324.3 323 51.7
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 1.4e-86 323.9 330 54.8
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 3.1e-86 322.8 324 53.1
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 4.1e-86 322.4 338 52.7
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 5.3e-86 322.0 260 62.7
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 6.9e-86 321.6 325 53.8
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 6.9e-86 321.6 321 50.2
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 9.0e-86 321.2 324 54.0
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 9.0e-86 321.2 269 58.7
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.5e-85 320.5 264 62.5
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.5e-85 320.5 255 63.5
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.6e-85 319.7 263 60.5
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 3.4e-85 319.3 253 63.2
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 4.5e-85 318.9 260 63.5
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 5.9e-85 318.5 260 61.9
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 5.9e-85 318.5 259 62.5
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 7.7e-85 318.2 327 52.3
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 1.0e-84 317.8 253 63.2
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 1.7e-84 317.0 325 52.0
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 1.7e-84 317.0 321 49.5
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 1.7e-84 317.0 257 63.0
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 2.9e-84 316.2 322 55.0
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 2.9e-84 316.2 257 61.1
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 6.5e-84 315.1 255 61.2
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 6.5e-84 315.1 326 53.1
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 6.5e-84 315.1 326 50.0
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 1.4e-83 313.9 323 50.8
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 1.9e-83 313.5 329 51.7
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 2.5e-83 313.2 328 50.0
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 2.5e-83 313.2 254 62.6
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.2e-83 312.8 322 51.9
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 3.2e-83 312.8 322 51.9
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 4.2e-83 312.4 324 50.9
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 4.2e-83 312.4 327 52.6
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 4.2e-83 312.4 304 56.2
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 7.2e-83 311.6 326 50.9
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 9.4e-83 311.2 328 50.0
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 9.4e-83 311.2 330 49.1
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 2.7e-82 309.7 253 62.5
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 4.6e-82 308.9 322 54.0
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 4.6e-82 308.9 308 53.9
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.0e-81 307.8 251 61.0
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 1.4e-81 307.4 323 49.8
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 1.4e-81 307.4 330 52.1
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 1.4e-81 307.4 258 60.1
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 3.0e-81 306.2 260 58.5
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 8.8e-81 304.7 253 62.1
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 2.5e-80 303.1 260 59.2
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 2.5e-80 303.1 317 49.2
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 7.4e-80 301.6 251 59.8
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 4.8e-79 298.9 255 57.6
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 6.3e-79 298.5 335 51.9
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 3.1e-78 296.2 313 52.1
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 4.1e-78 295.8 276 56.5
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 4.1e-78 295.8 276 56.5
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 5.3e-78 295.4 264 55.3
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 5.3e-78 295.4 280 55.7
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 6.9e-78 295.0 333 48.6
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 6.9e-78 295.0 302 51.3
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 3.4e-77 292.7 255 56.1
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 3.4e-77 292.7 255 56.1
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 4.5e-77 292.4 336 49.1
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 7.7e-77 291.6 255 56.1
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 5.0e-76 288.9 255 55.7
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 8.5e-76 288.1 255 55.7
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 3.2e-75 286.2 328 47.3
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 4.2e-75 285.8 293 52.9
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 4.7e-74 282.3 257 56.0
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 4.8e-71 272.3 360 46.4
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 5.3e-70 268.9 261 52.5
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 7.0e-70 268.5 253 52.2
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 2.9e-68 263.1 249 52.2
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 5.0e-68 262.3 257 52.1
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 2.1e-66 256.9 279 50.5
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 3.6e-66 256.1 247 52.2
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 8.0e-66 255.0 246 53.7
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 2.2e-63 246.9 156 75.0
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 2.2e-60 236.9 268 50.0
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 1.1e-59 234.6 252 48.4
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 1.9e-59 233.8 161 64.6
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 2.1e-58 230.3 178 59.0
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 8.8e-57 224.9 238 52.5
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 2.8e-55 219.9 246 48.8
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 3.8e-52 209.5 159 62.3
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.5e-48 197.6 127 75.6
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 2.3e-44 183.7 236 45.3
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 4.7e-42 176.0 169 53.3
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 3.7e-39 166.4 284 39.8
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 9.2e-38 161.8 231 40.7
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 1.6e-37 161.0 171 46.8
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.0e-37 160.6 83 98.8
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 7.8e-37 158.7 244 41.8
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 7.8e-37 158.7 255 36.1
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 1.7e-31 141.0 88 75.0
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 2.9e-31 140.2 107 68.2
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 2.9e-31 140.2 138 52.9
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 1.2e-26 124.8 89 67.4
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 1.2e-24 118.2 75 69.3
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 7.1e-22 109.0 122 45.1
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 9.5e-19 98.6 76 63.2
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 1.8e-17 94.4 83 53.0
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.5e-11 74.7 55 60.0


User provided reference genes

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