Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 3.0e-196 688.3 354 100.0
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.4e-148 530.0 337 84.3
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 1.1e-142 510.4 325 84.3
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 1.1e-137 493.8 325 81.8
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 4.9e-122 441.8 325 71.7
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.4e-116 423.7 265 85.3
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 9.0e-116 421.0 327 69.7
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 3.2e-113 412.5 327 69.1
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 7.4e-110 401.4 327 64.8
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 2.1e-109 399.8 327 64.8
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 2.4e-108 396.4 327 63.9
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 5.3e-108 395.2 327 64.5
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.2e-107 394.0 339 63.4
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 4.9e-106 388.7 327 64.2
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 4.9e-106 388.7 327 63.3
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 1.9e-105 386.7 275 69.8
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 2.5e-105 386.3 328 62.8
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 1.2e-104 384.0 327 63.9
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 4.6e-104 382.1 326 64.1
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 4.6e-104 382.1 325 61.5
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 4.6e-104 382.1 325 62.8
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 7.9e-104 381.3 325 63.7
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 1.0e-103 380.9 325 62.8
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 3.0e-103 379.4 327 63.6
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 3.9e-103 379.0 327 62.7
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 2.5e-102 376.3 326 62.6
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 7.4e-102 374.8 328 61.0
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 7.4e-102 374.8 325 62.2
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 2.8e-101 372.9 327 60.6
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 3.7e-101 372.5 327 60.2
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 3.7e-101 372.5 327 60.6
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 1.8e-100 370.2 329 59.6
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 6.9e-100 368.2 328 61.0
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 2.0e-99 366.7 274 68.6
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.0e-99 366.7 327 59.9
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 2.6e-99 366.3 328 60.7
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 4.5e-99 365.5 324 61.7
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 4.5e-99 365.5 327 60.9
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 7.6e-99 364.8 327 61.5
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 7.6e-99 364.8 330 60.6
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 1.0e-98 364.4 325 59.1
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 1.3e-98 364.0 325 59.4
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 1.7e-98 363.6 325 60.3
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.2e-98 363.2 327 60.6
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 2.2e-98 363.2 327 60.6
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 3.8e-98 362.5 327 60.9
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 3.8e-98 362.5 327 59.3
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 5.0e-98 362.1 367 54.8
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 3.2e-97 359.4 325 59.4
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 4.2e-97 359.0 332 59.3
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 7.2e-97 358.2 327 59.0
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 1.6e-96 357.1 325 58.8
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 1.4e-95 354.0 326 59.2
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 2.3e-95 353.2 382 52.4
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 3.0e-95 352.8 328 57.3
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 1.9e-94 350.1 327 58.7
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 5.7e-94 348.6 328 56.4
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 9.7e-94 347.8 338 63.9
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 2.2e-93 346.7 327 58.4
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 3.7e-93 345.9 343 56.6
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 3.7e-93 345.9 326 58.0
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 8.2e-93 344.7 325 58.2
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 6.9e-92 341.7 326 56.7
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 1.2e-91 340.9 326 57.4
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 3.4e-91 339.3 328 57.9
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 3.4e-91 339.3 329 58.1
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 5.9e-91 338.6 328 57.6
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 1.0e-90 337.8 326 57.4
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 1.0e-90 337.8 393 50.6
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.3e-90 337.4 325 58.8
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 3.8e-90 335.9 369 50.9
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 5.0e-90 335.5 325 56.3
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 8.5e-90 334.7 328 56.1
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 8.5e-90 334.7 263 61.6
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 1.6e-88 330.5 328 55.2
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 4.7e-88 328.9 328 55.8
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 1.0e-87 327.8 346 54.9
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 1.8e-87 327.0 223 73.5
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 2.3e-87 326.6 235 68.9
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 6.7e-87 325.1 332 56.3
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 6.7e-87 325.1 332 56.3
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 1.1e-86 324.3 326 54.9
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 1.5e-86 323.9 328 54.6
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 2.6e-86 323.2 331 52.6
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 3.3e-86 322.8 331 52.9
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 4.4e-86 322.4 272 62.1
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 9.7e-86 321.2 326 55.5
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 1.7e-85 320.5 325 54.8
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 2.8e-85 319.7 361 49.3
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 3.7e-85 319.3 338 52.7
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 4.8e-85 318.9 323 54.8
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 8.2e-85 318.2 337 51.9
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 4.1e-84 315.8 326 54.9
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 2.6e-83 313.2 316 56.6
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 5.9e-83 312.0 375 49.6
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 1.3e-82 310.8 351 50.1
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 2.2e-82 310.1 333 53.2
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.4e-81 307.4 326 51.2
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 4.2e-81 305.8 326 51.5
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 5.5e-81 305.4 330 50.9
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 7.2e-81 305.1 364 48.9
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 7.2e-81 305.1 328 51.8
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 1.6e-80 303.9 327 51.7
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.6e-80 303.9 324 52.8
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 3.6e-80 302.8 324 52.5
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.3e-77 294.3 283 58.3
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 2.4e-76 290.0 297 56.2
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 1.6e-75 287.3 327 51.4
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 1.0e-74 284.6 327 47.7
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 2.2e-74 283.5 322 53.4
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 3.8e-74 282.7 352 45.7
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 3.8e-74 282.7 327 48.0
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 4.7e-72 275.8 250 60.0
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 8.8e-71 271.6 328 49.7
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 2.0e-70 270.4 331 46.2
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 8.2e-69 265.0 327 49.8
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 1.1e-68 264.6 370 44.3
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 1.4e-68 264.2 288 52.8
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 1.1e-60 238.0 296 48.3
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.7e-59 233.4 165 79.4
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 7.2e-57 225.3 268 48.5
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 1.7e-53 214.2 330 40.0
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 2.0e-51 207.2 263 44.9
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 3.5e-51 206.5 249 44.6
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.5e-49 201.1 258 45.3
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 2.5e-49 200.3 216 53.2
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 7.3e-49 198.7 325 40.3
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 9.5e-49 198.4 214 51.9
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 1.1e-41 174.9 165 60.0
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 1.5e-41 174.5 185 53.5
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 3.3e-41 173.3 151 58.3
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 1.8e-39 167.5 128 66.4
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 2.0e-38 164.1 153 57.5
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 7.5e-38 162.2 145 63.4
RcHm_v2.0_Chr7g0241921 Rosa chinensis HOM05D004457 ORTHO05D005282 7.8e-35 152.1 97 82.5
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 8.6e-34 148.7 142 55.6
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 1.1e-33 148.3 215 41.9
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 1.6e-32 144.4 147 50.3
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 1.4e-31 141.4 91 76.9
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 4.0e-31 139.8 147 55.1
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 4.4e-30 136.3 274 35.0
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 1.3e-29 134.8 213 36.2
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 1.7e-29 134.4 289 30.1
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 2.2e-29 134.0 122 61.5
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 1.1e-28 131.7 238 34.9
ECA233G2641 Erigeron canadensis HOM05D004457 ORTHO05D005282 8.1e-24 115.5 120 56.7
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 8.1e-24 115.5 161 44.7
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 2.4e-23 114.0 112 53.6
Sopen03g027940 Solanum pennellii HOM05D004457 ORTHO05D005282 2.6e-22 110.5 118 49.2
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.3e-18 98.2 78 64.1
C07p33100 Brassica napus HOM05D004457 ORTHO05D005282 3.6e-16 90.1 75 66.7
BcaC06g34068 Brassica carinata HOM05D004457 ORTHO05D005282 8.1e-16 89.0 75 66.7
BolC9t54837H Brassica oleracea HOM05D004457 ORTHO05D005282 8.1e-16 89.0 75 66.7
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 1.9e-12 77.8 47 76.6
CDE02G4136 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 5.4e-12 76.3 77 48.1
FAN14G3950 Fragaria x ananassa HOM05D017155 ORTHO05D210489 2.5e-09 67.4 39 89.7
FAN15G0611 Fragaria x ananassa HOM05D017155 ORTHO05D209856 2.5e-09 67.4 39 89.7
FAN22G0137 Fragaria x ananassa HOM05D000876 ORTHO05D000285 5.6e-09 66.2 38 89.5
FvH4_2g22411 Fragaria vesca HOM05D017155 ORTHO05D022651 7.3e-09 65.9 44 77.3
FvH4_2g31320 Fragaria vesca HOM05D000876 ORTHO05D022651 7.3e-09 65.9 44 77.3
FvH4_7g08971 Fragaria vesca HOM05D017155 ORTHO05D022651 7.3e-09 65.9 44 77.3
FvH4_6g39920 Fragaria vesca HOM05D000876 ORTHO05D000285 9.6e-09 65.5 38 89.5
FAN21G1455 Fragaria x ananassa HOM05D004981 ORTHO05D005635 6.2e-08 62.8 34 88.2
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.3e-07 59.7 34 85.3
arahy.Tifrunner.gnm1.ann1.G80LMI Arachis hypogaea HOM05D004457 ORTHO05D082520 3.4e-06 57.0 38 63.2


User provided reference genes

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