Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G1011 Fragaria x ananassa HOM05D005270 ORTHO05D006239 3.6e-146 521.5 259 100.0
FAN11G3467 Fragaria x ananassa HOM05D005270 ORTHO05D006239 4.0e-137 491.5 264 93.9
FAN23G0587 Fragaria x ananassa HOM05D016072 ORTHO05D006239 2.8e-58 229.6 200 66.0
FAN23G1777 Fragaria x ananassa HOM05D016072 ORTHO05D006239 3.8e-55 219.2 190 66.8
FAN04G3018 Fragaria x ananassa HOM05D005270 ORTHO05D006239 3.3e-43 179.5 166 62.7
FvH4_5g00280 Fragaria vesca HOM05D005270 ORTHO05D006239 7.4e-43 178.3 166 62.0
FAN18G1040 Fragaria x ananassa HOM05D005270 ORTHO05D006239 7.4e-43 178.3 166 62.0
FAN13G2928 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.3e-42 177.6 166 62.0
RcHm_v2.0_Chr7g0202331 Rosa chinensis HOM05D005270 ORTHO05D006239 1.7e-42 177.2 188 55.9
FAN08G1405 Fragaria x ananassa HOM05D005270 ORTHO05D006239 4.8e-42 175.6 166 61.4
FAN10G1808 Fragaria x ananassa HOM05D016072 ORTHO05D006239 1.7e-39 167.2 115 76.5
Prupe.5G075500 Prunus persica HOM05D005270 ORTHO05D006239 3.8e-39 166.0 166 58.4
Duzib205G1833 Durio zibethinus HOM05D005270 ORTHO05D006239 6.5e-39 165.2 131 66.4
MD06G1067000 Malus domestica HOM05D005270 ORTHO05D006239 1.4e-38 164.1 166 56.6
Ciclev10020501m.g Citrus clementina HOM05D005270 ORTHO05D006239 1.6e-37 160.6 166 57.2
Atru.chr9.1379_Atru.chr9.1380 Acer truncatum HOM05D005270 ORTHO05D006239 3.6e-37 159.5 166 56.0
Gohir.D09G190100 Gossypium hirsutum HOM05D005270 ORTHO05D006239 2.6e-35 153.3 166 54.2
Gorai.006G212700 Gossypium raimondii HOM05D005270 ORTHO05D006239 2.6e-35 153.3 166 54.2
CANSAT21G2027 Cannabis sativa HOM05D005270 ORTHO05D006239 5.7e-35 152.1 166 53.6
QL12p013868 Quercus lobata HOM05D005270 ORTHO05D006239 7.4e-35 151.8 174 51.1
Cpa.g.sc29.127 Carica papaya HOM05D005270 ORTHO05D006239 9.7e-35 151.4 166 55.4
Gohir.A09G195500 Gossypium hirsutum HOM05D005270 ORTHO05D006239 9.7e-35 151.4 166 53.6
Duzib068G0557 Durio zibethinus HOM05D005270 ORTHO05D006239 1.7e-34 150.6 166 54.2
FAN03G2731 Fragaria x ananassa HOM05D016072 ORTHO05D006239 2.2e-34 150.2 156 59.6
FAN12G3953 Fragaria x ananassa HOM05D016072 ORTHO05D006239 2.2e-34 150.2 156 59.6
FAN21G1940 Fragaria x ananassa HOM05D016072 ORTHO05D006239 2.2e-34 150.2 156 59.6
FAN23G0611 Fragaria x ananassa HOM05D016072 ORTHO05D006239 2.2e-34 150.2 156 59.6
Thecc.03G257000 Theobroma cacao HOM05D005270 ORTHO05D006239 3.7e-34 149.4 166 54.2
CiPaw.11G150400 Carya illinoinensis HOM05D005270 ORTHO05D006239 4.8e-34 149.1 166 53.6
ClCG01G003850 Citrullus lanatus HOM05D005270 ORTHO05D006239 4.8e-34 149.1 166 53.6
Sed0019529 Sechium edule HOM05D005270 ORTHO05D006239 4.8e-34 149.1 166 53.6
Eucgr.D02030 Eucalyptus grandis HOM05D005270 ORTHO05D006239 6.3e-34 148.7 166 54.2
FAN17G0911 Fragaria x ananassa HOM05D016072 ORTHO05D006239 1.1e-33 147.9 156 59.0
Gohir.D03G160700 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.8e-33 147.1 166 53.0
Lalb_Chr05g0225581 Lupinus albus HOM05D005270 ORTHO05D006239 1.8e-33 147.1 173 50.3
Sabra01G0092800 Salix brachista HOM05D005270 ORTHO05D006239 1.8e-33 147.1 172 52.3
Cc08_g12920 Coffea canephora HOM05D005270 ORTHO05D006239 3.1e-33 146.4 166 52.4
Gohir.A03G010000 Gossypium hirsutum HOM05D005270 ORTHO05D006239 3.1e-33 146.4 166 52.4
TWI81G0718 Tripterygium wilfordii HOM05D005270 ORTHO05D006239 3.1e-33 146.4 164 53.7
PGR031G3926 Punica granatum HOM05D005270 ORTHO05D006239 4.1e-33 146.0 166 52.4
Lj4g0020394 Lotus japonicus HOM05D005270 ORTHO05D006239 5.3e-33 145.6 174 49.4
Hma1.2p1_1414F.1_g281890 Hydrangea macrophylla HOM05D005270 ORTHO05D006239 7.0e-33 145.2 166 50.0
Peaxi162Scf00002g00815 Petunia axillaris HOM05D005270 ORTHO05D006239 7.0e-33 145.2 166 50.6
CARHR012530 Cardamine hirsuta HOM05D005270 ORTHO05D006239 9.1e-33 144.8 187 48.1
MELO3C005559.2 Cucumis melo HOM05D005270 ORTHO05D006239 1.2e-32 144.4 166 51.2
CsaV3_5G003980 Cucumis sativus L. HOM05D005270 ORTHO05D006239 1.2e-32 144.4 166 51.2
Potri.001G120400 Populus trichocarpa HOM05D005270 ORTHO05D006239 1.2e-32 144.4 172 51.2
arahy.Tifrunner.gnm1.ann1.9F7ELE Arachis hypogaea HOM05D005270 ORTHO05D006239 1.6e-32 144.1 166 51.2
arahy.Tifrunner.gnm1.ann1.VW53Z5 Arachis hypogaea HOM05D005270 ORTHO05D006239 1.6e-32 144.1 166 51.2
SalBow1G5553 Salvia bowleyana HOM05D005270 ORTHO05D006239 1.6e-32 144.1 167 51.5
Lj2A211T58 Lonicera japonica HOM05D005270 ORTHO05D006239 2.0e-32 143.7 166 50.6
Sed0011689 Sechium edule HOM05D005270 ORTHO05D006239 2.0e-32 143.7 168 51.8
Glyma.05G056400 Glycine max HOM05D005270 ORTHO05D006239 2.6e-32 143.3 174 49.4
THA.LOC104809459 Tarenaya hassleriana HOM05D005270 ORTHO05D006239 2.6e-32 143.3 166 51.2
Manes.01G076600 Manihot esculenta HOM05D005270 ORTHO05D006239 3.5e-32 142.9 146 58.2
Dinv39103 Davidia involucrata HOM05D000201 ORTHO05D001515 5.9e-32 142.1 166 50.6
Carub.0001s1190 Capsella rubella HOM05D005270 ORTHO05D006239 7.7e-32 141.7 166 51.2
MBI04_g37584_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 7.7e-32 141.7 166 51.2
Nitab4.5_0000993g0070 Nicotiana tabacum HOM05D005270 ORTHO05D006239 1.0e-31 141.4 166 50.0
Nitab4.5_0009175g0010 Nicotiana tabacum HOM05D005270 ORTHO05D006239 1.0e-31 141.4 166 50.0
AL1G23510 Arabidopsis lyrata HOM05D005270 ORTHO05D006239 1.3e-31 141.0 166 50.6
Dinv21601 Davidia involucrata HOM05D005270 ORTHO05D006239 1.3e-31 141.0 166 48.8
FAN04G2435 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.7e-31 140.6 103 73.8
Glyma.17G138600 Glycine max HOM05D005270 ORTHO05D006239 2.2e-31 140.2 160 53.8
Aa31LG1G2400 Aethionema arabicum HOM05D005270 ORTHO05D006239 2.9e-31 139.8 166 51.2
Rhsim07G0104300 Rhododendron simsii HOM05D005270 ORTHO05D006239 2.9e-31 139.8 166 48.2
CSS0023019 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 3.8e-31 139.4 166 50.0
CSS0046114 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 3.8e-31 139.4 166 50.0
TAR629G2769 Trochodendron aralioides HOM05D005270 ORTHO05D006239 3.8e-31 139.4 163 52.1
FAN14G3934 Fragaria x ananassa HOM05D000617 ORTHO05D000478 6.5e-31 138.7 102 73.5
BcaC05g25195 Brassica carinata HOM05D005270 ORTHO05D006239 1.1e-30 137.9 166 50.0
Sp1g10840 Schrenkiella parvula HOM05D005270 ORTHO05D006239 1.1e-30 137.9 166 50.6
C05p11010 Brassica napus HOM05D005270 ORTHO05D006239 1.5e-30 137.5 167 49.7
BolC5t29844H Brassica oleracea HOM05D005270 ORTHO05D006239 1.5e-30 137.5 167 49.7
GSVIVG01004774001 Vitis vinifera HOM05D005270 ORTHO05D006239 1.5e-30 137.5 166 50.0
Sc01g0009340 Simmondsia chinensis HOM05D005270 ORTHO05D006239 1.9e-30 137.1 161 50.9
A06p09330 Brassica napus HOM05D005270 ORTHO05D006239 2.5e-30 136.7 167 49.1
Thhalv10007790m.g Eutrema salsugineum HOM05D005270 ORTHO05D006239 2.5e-30 136.7 163 50.3
ATR1152G004 Amborella trichopoda HOM05D005270 ORTHO05D006239 3.2e-30 136.3 146 53.4
MSTRG.25537 Avicennia marina HOM05D005270 ORTHO05D006239 3.2e-30 136.3 166 48.8
BraA06t24120Z Brassica rapa HOM05D005270 ORTHO05D006239 3.2e-30 136.3 167 49.1
Sopen08g027530 Solanum pennellii HOM05D005270 ORTHO05D006239 4.2e-30 136.0 166 48.2
PGSC0003DMG400004791 Solanum tuberosum HOM05D005270 ORTHO05D006239 4.2e-30 136.0 166 48.2
Actinidia27450 Actinidia chinensis HOM05D005270 ORTHO05D006239 5.5e-30 135.6 237 38.8
AT1G12230 Arabidopsis thaliana HOM05D005270 ORTHO05D006239 7.2e-30 135.2 188 46.3
Aqoxy7G00723 Aquilegia oxysepala HOM05D005270 ORTHO05D006239 9.4e-30 134.8 166 46.4
Solyc08g079070.2 Solanum lycopersicum HOM05D005270 ORTHO05D006239 9.4e-30 134.8 166 47.6
PSO170G6680 Papaver somniferum HOM05D005270 ORTHO05D006239 1.2e-29 134.4 161 50.3
GSVIVG01001274001 Vitis vinifera HOM05D005270 ORTHO05D006239 2.1e-29 133.7 166 49.4
Actinidia05188 Actinidia chinensis HOM05D005270 ORTHO05D006239 2.7e-29 133.3 166 47.6
PSO017G6911 Papaver somniferum HOM05D005270 ORTHO05D006239 2.7e-29 133.3 161 49.7
Ca_25339_v3 Cicer arietinum L. HOM05D005270 ORTHO05D006239 3.6e-29 132.9 160 51.2
HPP92_022434 Vanilla planifolia HOM05D005270 ORTHO05D006239 3.6e-29 132.9 146 51.4
CAN.G1217.18 Capsicum annuum HOM05D000486 ORTHO05D000375 4.7e-29 132.5 166 48.2
Migut.E01048 Erythranthe guttata HOM05D005270 ORTHO05D006239 6.1e-29 132.1 166 47.0
vmacro14106 Vaccinium macrocarpon HOM05D005270 ORTHO05D006239 1.0e-28 131.3 185 43.8
SGA_v2.0_scaffold144G35994 Striga asiatica HOM05D005270 ORTHO05D003965 1.8e-28 130.6 146 52.1
unitig_0.g1234 Utricularia gibba HOM05D005270 ORTHO05D006239 1.8e-28 130.6 161 48.4
SalBow1G0839 Salvia bowleyana HOM05D005270 ORTHO05D006239 4.0e-28 129.4 174 46.0
Medtr4g101620 Medicago truncatula HOM05D005270 ORTHO05D006239 8.8e-28 128.3 160 50.0
CDE12G0422 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 1.5e-27 127.5 160 47.5
Psat4g070360 Pisum sativum HOM05D005270 ORTHO05D006239 2.0e-27 127.1 160 50.0
CDE04G1696 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 2.6e-27 126.7 161 46.6
Oeu038010.1 Olea europaea HOM05D005270 ORTHO05D006239 4.4e-27 125.9 146 51.4
TPR.G37612 Trifolium pratense HOM05D005270 ORTHO05D006239 4.4e-27 125.9 160 50.0
AUR62007475 Chenopodium quinoa HOM05D005270 ORTHO05D006239 7.5e-27 125.2 149 51.7
Lsat_1_v5_gn_6_90321 Lactuca sativa HOM05D005270 ORTHO05D006239 6.3e-26 122.1 163 45.4
Atru.chr9.1382 Acer truncatum HOM05D005270 ORTHO05D006239 2.4e-25 120.2 84 77.4
Os08g0154300 Oryza sativa ssp. japonica HOM05D005270 ORTHO05D006239 2.4e-25 120.2 164 47.0
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 9.1e-25 118.2 58 100.0
HanXRQChr03g0087851 Helianthus annuus HOM05D005270 ORTHO05D006239 1.2e-24 117.9 163 44.2
FAN26G2512 Fragaria x ananassa HOM05D005270 ORTHO05D006239 7.7e-24 115.2 78 76.9
Zm00001eb172680 Zea mays HOM05D005270 ORTHO05D006239 2.9e-23 113.2 160 44.4
ECA240G0014 Erigeron canadensis HOM05D000201 ORTHO05D006239 3.8e-23 112.8 164 42.7
DCAR_006814 Daucus carota HOM05D005270 ORTHO05D006239 5.0e-23 112.5 138 49.3
Gorai.003G169200 Gossypium raimondii HOM05D005270 ORTHO05D006239 4.2e-22 109.4 83 72.3
VMungo0251G3554 Vigna mungo HOM05D005270 ORTHO05D006239 3.6e-21 106.3 129 48.8
RcHm_v2.0_Chr6g0270571 Rosa chinensis HOM05D005270 ORTHO05D006239 8.0e-21 105.1 53 98.1
Pp3c15_6350 Physcomitrium patens HOM05D005270 ORTHO05D006239 1.4e-20 104.4 140 45.7
Phvul.003G218000 Phaseolus vulgaris HOM05D005270 ORTHO05D006239 4.0e-20 102.8 129 47.3
AagrBONN_evm.TU.Sc2ySwM_369.586 Anthoceros agrestis HOM05D005270 ORTHO05D006239 2.0e-19 100.5 140 44.3
FAN23G1103 Fragaria x ananassa HOM05D016072 ORTHO05D199226 9.8e-19 98.2 81 66.7
Mapoly0029s0033 Marchantia polymorpha HOM05D005270 ORTHO05D006239 2.8e-18 96.7 140 42.1
EL10Ac5g13010 Beta vulgaris HOM05D005270 ORTHO05D006239 8.3e-18 95.1 167 40.1
Psat5g235160 Pisum sativum HOM05D005270 ORTHO05D006239 1.1e-17 94.7 128 48.4
Psat5g232960 Pisum sativum HOM05D005270 ORTHO05D006239 2.0e-16 90.5 128 46.1
SEGI_36758 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 2.0e-16 90.5 78 62.8
CBR_g37411 Chara braunii HOM05D005270 ORTHO05D006239 3.5e-16 89.7 140 39.3
FAN21G3382 Fragaria x ananassa HOM05D013622 ORTHO05D208262 8.0e-13 78.6 63 63.5
COL.COLO4_37215 Corchorus olitorius HOM05D005270 ORTHO05D006239 6.8e-12 75.5 107 43.0
BcaC07g38600 Brassica carinata HOM05D000238 ORTHO05D037998 4.9e-10 69.3 56 71.4
FAN19G0966 Fragaria x ananassa HOM05D013622 ORTHO05D207874 6.3e-10 68.9 45 75.6
CAN.G1488.1 Capsicum annuum HOM05D005270 ORTHO05D006239 1.0e-07 61.6 77 44.2
CAN.G605.8 Capsicum annuum HOM05D005270 ORTHO05D006239 1.7e-07 60.8 67 46.3
GSVIVG01028518001 Vitis vinifera HOM05D005270 ORTHO05D006239 1.5e-06 57.8 50 52.0
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 4.3e-06 56.2 31 93.5


User provided reference genes

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