Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G0948 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.1e-179 633.3 328 100.0
FAN23G2237 Fragaria x ananassa HOM05D002536 ORTHO05D008091 2.3e-121 439.5 240 95.8
FvH4_1g30050 Fragaria vesca HOM05D002536 ORTHO05D008091 9.5e-120 434.1 245 93.9
FAN26G2179 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.5e-117 426.8 245 92.2
RcHm_v2.0_Chr3g0492091 Rosa chinensis HOM05D002536 ORTHO05D008091 1.9e-107 393.3 265 81.1
FAN19G1396 Fragaria x ananassa HOM05D002536 ORTHO05D008091 7.8e-106 387.9 214 96.7
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 6.0e-98 361.7 323 65.9
Prupe.3G152500 Prunus persica HOM05D002536 ORTHO05D008091 1.3e-97 360.5 253 79.1
Cfa007856 Carpinus fangiana HOM05D002536 ORTHO05D008091 1.4e-94 350.5 244 78.3
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 4.5e-93 345.5 216 86.1
QL05p059601 Quercus lobata HOM05D002536 ORTHO05D008091 4.9e-92 342.0 235 78.7
QL05p059839 Quercus lobata HOM05D002536 ORTHO05D008091 1.1e-91 340.9 235 79.1
CiPaw.04G045700 Carya illinoinensis HOM05D002536 ORTHO05D008091 1.7e-89 333.6 256 74.2
Sed0014940 Sechium edule HOM05D002536 ORTHO05D008091 6.6e-89 331.6 224 75.9
Actinidia15922 Actinidia chinensis HOM05D002536 ORTHO05D008091 1.5e-88 330.5 264 67.4
QL05p058873 Quercus lobata HOM05D002536 ORTHO05D008091 1.5e-88 330.5 224 79.0
Dinv19004 Davidia involucrata HOM05D002536 ORTHO05D008091 1.9e-88 330.1 220 80.9
MELO3C020303.2 Cucumis melo HOM05D002536 ORTHO05D008091 9.6e-88 327.8 224 74.1
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla HOM05D002536 ORTHO05D008091 3.6e-87 325.9 220 80.9
TAR622G0880 Trochodendron aralioides HOM05D002536 ORTHO05D008091 3.6e-87 325.9 223 74.0
Thecc.02G292900 Theobroma cacao HOM05D002536 ORTHO05D008091 2.4e-86 323.2 255 71.8
CANSAT78G0797 Cannabis sativa HOM05D002536 ORTHO05D008091 3.1e-86 322.8 218 78.4
GSVIVG01030878001 Vitis vinifera HOM05D002536 ORTHO05D008091 9.0e-86 321.2 245 72.7
Atru.chr1.1780 Acer truncatum HOM05D002536 ORTHO05D008091 1.2e-85 320.9 223 73.5
Atru.chr1.1783 Acer truncatum HOM05D002536 ORTHO05D008091 1.2e-85 320.9 223 73.5
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea HOM05D002536 ORTHO05D008091 2.0e-85 320.1 223 73.5
Sabra04G0061700 Salix brachista HOM05D002536 ORTHO05D008091 3.4e-85 319.3 253 65.6
Nn3g18195 Nelumbo nucifera HOM05D002536 ORTHO05D008091 5.8e-85 318.5 263 69.2
GSVIVG01030879001 Vitis vinifera HOM05D002536 ORTHO05D008091 5.8e-85 318.5 220 78.6
Gohir.D04G186100 Gossypium hirsutum HOM05D002536 ORTHO05D008091 7.6e-85 318.2 246 71.5
Gorai.012G182500 Gossypium raimondii HOM05D002536 ORTHO05D008091 7.6e-85 318.2 246 71.5
PGR004G1229 Punica granatum HOM05D002536 ORTHO05D008091 7.6e-85 318.2 261 69.3
COL.COLO4_16592 Corchorus olitorius HOM05D002536 ORTHO05D008091 9.9e-85 317.8 246 68.3
TPR.G11790 Trifolium pratense HOM05D002536 ORTHO05D008091 1.3e-84 317.4 218 74.3
Medtr5g086010 Medicago truncatula HOM05D002536 ORTHO05D008091 2.9e-84 316.2 218 72.9
Medtr5g087440 Medicago truncatula HOM05D002536 ORTHO05D008091 2.9e-84 316.2 218 72.9
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea HOM05D002536 ORTHO05D008091 3.8e-84 315.8 218 73.9
Gohir.A04G142800 Gossypium hirsutum HOM05D002536 ORTHO05D008091 3.8e-84 315.8 270 67.0
HanXRQChr11g0325231 Helianthus annuus HOM05D002536 ORTHO05D008091 6.4e-84 315.1 218 76.1
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 1.4e-83 313.9 217 74.7
Psat2g023480 Pisum sativum HOM05D002536 ORTHO05D008091 1.4e-83 313.9 240 67.1
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 3.2e-83 312.8 216 74.1
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 3.2e-83 312.8 213 74.6
Ca_06135_v3 Cicer arietinum L. HOM05D002536 ORTHO05D008091 3.2e-83 312.8 218 72.9
Hund13690 Selenicereus undatus HOM05D002536 ORTHO05D008091 3.2e-83 312.8 217 76.5
ClCG05G010840 Citrullus lanatus HOM05D002536 ORTHO05D008091 4.2e-83 312.4 219 73.5
CsaV3_3G017670 Cucumis sativus L. HOM05D002536 ORTHO05D008091 4.2e-83 312.4 222 72.1
Lalb_Chr03g0036071 Lupinus albus HOM05D002536 ORTHO05D008091 5.5e-83 312.0 218 71.6
Lj2P435T31 Lonicera japonica HOM05D002536 ORTHO05D008091 7.1e-83 311.6 212 75.9
LjContig00564g0008816 Lotus japonicus HOM05D002536 ORTHO05D008091 7.1e-83 311.6 218 73.4
Ah.10g037920 Amaranthus hybridus HOM05D002536 ORTHO05D008091 1.6e-82 310.5 218 73.9
AUR62023248 Chenopodium quinoa HOM05D002536 ORTHO05D008091 1.6e-82 310.5 240 68.3
Duzib248G1146 Durio zibethinus HOM05D002536 ORTHO05D008091 2.1e-82 310.1 246 72.0
Sc10g0000870 Simmondsia chinensis HOM05D002536 ORTHO05D008091 2.7e-82 309.7 276 64.1
ECA232G4028 Erigeron canadensis HOM05D002536 ORTHO05D008091 3.5e-82 309.3 251 68.9
TWI53G1346 Tripterygium wilfordii HOM05D002536 ORTHO05D008091 6.0e-82 308.5 247 66.0
Rhsim10G0078900 Rhododendron simsii HOM05D002536 ORTHO05D008091 1.8e-81 307.0 233 70.4
Lsat_1_v5_gn_4_154760 Lactuca sativa HOM05D002536 ORTHO05D008091 5.1e-81 305.4 221 74.7
VMungo1309G0890 Vigna mungo HOM05D002536 ORTHO05D008091 6.7e-81 305.1 218 74.3
Ciclev10012168m.g Citrus clementina HOM05D002536 ORTHO05D008091 1.1e-80 304.3 215 73.0
EL10Ac2g04494 Beta vulgaris HOM05D002536 ORTHO05D008091 1.5e-80 303.9 218 73.4
Eucgr.F02816 Eucalyptus grandis HOM05D002536 ORTHO05D008091 1.5e-80 303.9 220 69.1
Potri.004G091600 Populus trichocarpa HOM05D002536 ORTHO05D008091 1.5e-80 303.9 258 64.0
Aqoxy3G00142 Aquilegia oxysepala HOM05D002536 ORTHO05D008091 5.6e-80 302.0 222 68.9
AUR62023202 Chenopodium quinoa HOM05D002536 ORTHO05D008091 5.6e-80 302.0 212 74.1
Phvul.004G133300 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 5.6e-80 302.0 247 68.8
Sp6g26760 Schrenkiella parvula HOM05D002536 ORTHO05D008091 7.4e-80 301.6 226 67.7
Cpa.g.sc116.19 Carica papaya HOM05D002536 ORTHO05D008091 1.1e-78 297.7 234 68.4
A02p04220 Brassica napus HOM05D002536 ORTHO05D008091 1.8e-78 297.0 237 65.4
BraA02t05385Z Brassica rapa HOM05D002536 ORTHO05D008091 1.8e-78 297.0 237 65.4
Thhalv10014009m.g Eutrema salsugineum HOM05D002536 ORTHO05D008091 2.4e-78 296.6 226 66.4
BcaC03g13522 Brassica carinata HOM05D002536 ORTHO05D008091 3.1e-78 296.2 242 64.5
BolC2t06821H Brassica oleracea HOM05D002536 ORTHO05D008091 4.0e-78 295.8 235 65.5
Phvul.008G162400 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 4.0e-78 295.8 218 73.9
C02p09100 Brassica napus HOM05D002536 ORTHO05D008091 6.9e-78 295.0 242 64.0
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 1.5e-77 293.9 224 70.5
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 2.0e-77 293.5 218 69.7
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 8.4e-76 288.1 231 63.6
Cc07_g08230 Coffea canephora HOM05D002536 ORTHO05D008091 1.4e-75 287.3 218 67.0
CAN.G625.80 Capsicum annuum HOM05D002536 ORTHO05D008091 2.5e-75 286.6 220 71.8
Nitab4.5_0002248g0020 Nicotiana tabacum HOM05D002536 ORTHO05D008091 3.5e-74 282.7 219 71.2
Sopen02g035940 Solanum pennellii HOM05D002536 ORTHO05D008091 3.5e-74 282.7 219 69.9
Peaxi162Scf00803g00531 Petunia axillaris HOM05D002536 ORTHO05D008091 4.6e-74 282.3 220 70.5
Nitab4.5_0002456g0160 Nicotiana tabacum HOM05D002536 ORTHO05D008091 6.0e-74 282.0 219 71.2
Solyc02g091320.4 Solanum lycopersicum HOM05D002536 ORTHO05D008091 7.9e-74 281.6 216 70.8
PGSC0003DMG400030642 Solanum tuberosum HOM05D002536 ORTHO05D008091 3.0e-73 279.6 251 65.3
Oeu047422.1 Olea europaea HOM05D002536 ORTHO05D008091 5.1e-73 278.9 218 67.9
Manes.01G115200 Manihot esculenta HOM05D002536 ORTHO05D008091 8.7e-73 278.1 185 77.8
QL05p059463 Quercus lobata HOM05D002536 ORTHO05D008091 1.1e-72 277.7 235 63.8
MSTRG.23612 Avicennia marina HOM05D002536 ORTHO05D008091 2.1e-71 273.5 221 63.3
CARHR195750 Cardamine hirsuta HOM05D002536 ORTHO05D008091 6.3e-71 271.9 229 63.3
SalBow3G4287 Salvia bowleyana HOM05D002536 ORTHO05D008091 6.3e-71 271.9 252 57.5
AL6G28530 Arabidopsis lyrata HOM05D002536 ORTHO05D008091 2.4e-70 270.0 238 60.9
PSO478G1642 Papaver somniferum HOM05D002536 ORTHO05D008091 3.1e-70 269.6 270 57.0
Carub.0006s1568 Capsella rubella HOM05D002536 ORTHO05D008091 2.6e-69 266.5 240 61.2
PSO782G0049 Papaver somniferum HOM05D002536 ORTHO05D008091 1.3e-68 264.2 255 58.4
MD09G1260800 Malus domestica HOM05D002536 ORTHO05D008091 1.7e-68 263.8 183 75.4
ATR0041G006 Amborella trichopoda HOM05D002536 ORTHO05D008091 3.8e-68 262.7 204 71.6
Migut.H00262 Erythranthe guttata HOM05D002536 ORTHO05D008091 5.0e-68 262.3 221 61.5
Os01g0125700 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D008091 6.5e-68 261.9 207 65.7
CDE07G0699 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 1.6e-66 257.3 218 66.1
AT5G17460 Arabidopsis thaliana HOM05D002536 ORTHO05D008091 1.8e-62 243.8 185 67.0
SHI17045 Sapria himalayana HOM05D002536 ORTHO05D008091 5.3e-62 242.3 220 64.5
MBI16_g46274_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D008091 7.2e-59 231.9 155 75.5
Glyma.13G079200 Glycine max HOM05D002536 ORTHO05D008091 1.4e-57 227.6 197 66.0
unitig_899.g15351 Utricularia gibba HOM05D002536 ORTHO05D008091 1.8e-54 217.2 208 57.2
Glyma.14G164000 Glycine max HOM05D002536 ORTHO05D008091 5.9e-53 212.2 215 60.0
SGA_v2.0_scaffold6G03263 Striga asiatica HOM05D002536 ORTHO05D008091 3.8e-52 209.5 210 58.1
SGA_v2.0_scaffold6G03262 Striga asiatica HOM05D002536 ORTHO05D008091 2.5e-51 206.8 210 53.3
SGA_v2.0_scaffold6G03268 Striga asiatica HOM05D002536 ORTHO05D008091 4.2e-51 206.1 228 55.7
SGA_v2.0_scaffold6G03266 Striga asiatica HOM05D002536 ORTHO05D008091 1.2e-50 204.5 188 62.2
SEGI_34238 Sequoiadendron giganteum HOM05D002536 ORTHO05D008091 2.3e-49 200.3 228 51.3
MD09G1260900 Malus domestica HOM05D002536 ORTHO05D008091 4.1e-46 189.5 178 62.9
Zm00001eb334950 Zea mays HOM05D002536 ORTHO05D008091 4.1e-46 189.5 131 70.2
FAN28G0812 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.0e-44 184.9 216 56.9
HPP92_000766 Vanilla planifolia HOM05D002536 ORTHO05D008091 5.4e-22 109.4 116 51.7
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 8.0e-18 95.5 101 48.5
BcaC04g18790 Brassica carinata HOM05D002536 ORTHO05D008091 1.8e-14 84.3 90 53.3
BolC9t58807H Brassica oleracea HOM05D002536 ORTHO05D008091 2.4e-14 84.0 90 54.4
C09p59690 Brassica napus HOM05D002536 ORTHO05D008091 2.0e-13 80.9 90 53.3
BraA10t44252Z Brassica rapa HOM05D002536 ORTHO05D008091 1.4e-06 58.2 66 48.5
A10p21940 Brassica napus HOM05D002536 ORTHO05D008091 3.2e-06 57.0 33 72.7
A10p21930 Brassica napus HOM05D002536 ORTHO05D008091 5.4e-06 56.2 66 48.5


User provided reference genes

Program Settings