Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G0897 Fragaria x ananassa HOM05D001372 ORTHO05D007311 4.5e-51 204.1 93 100.0
FAN19G1239 Fragaria x ananassa HOM05D001372 ORTHO05D007311 2.1e-48 195.3 93 94.6
FAN26G1996 Fragaria x ananassa HOM05D001372 ORTHO05D007311 2.1e-48 195.3 93 95.7
FAN28G0653 Fragaria x ananassa HOM05D001372 ORTHO05D007311 4.1e-44 181.0 82 98.8
RcHm_v2.0_Chr6g0260171 Rosa chinensis HOM05D001372 ORTHO05D007311 2.9e-42 174.9 82 95.1
RcHm_v2.0_Chr6g0260511 Rosa chinensis HOM05D001372 ORTHO05D007311 2.9e-42 174.9 82 95.1
RcHm_v2.0_Chr6g0260501 Rosa chinensis HOM05D001372 ORTHO05D007311 1.9e-41 172.2 82 93.9
Prupe.8G112600 Prunus persica HOM05D001372 ORTHO05D007311 3.4e-38 161.4 82 86.6
MD10G1086600 Malus domestica HOM05D001372 ORTHO05D007311 5.8e-38 160.6 82 85.4
RcHm_v2.0_Chr6g0260771 Rosa chinensis HOM05D001372 ORTHO05D007311 3.7e-37 157.9 82 87.8
Ciclev10030268m.g Citrus clementina HOM05D001372 ORTHO05D007311 3.9e-34 147.9 82 75.6
Atru.chr13.1402 Acer truncatum HOM05D001372 ORTHO05D007311 5.0e-34 147.5 82 76.8
Ca_20817_v3 Cicer arietinum L. HOM05D001372 ORTHO05D007311 5.0e-34 147.5 86 74.4
Glyma.11G123600 Glycine max HOM05D001372 ORTHO05D007311 5.0e-34 147.5 86 75.6
Lalb_Chr01g0002991 Lupinus albus HOM05D001372 ORTHO05D007311 5.0e-34 147.5 82 80.5
TPR.G10235 Trifolium pratense HOM05D001372 ORTHO05D007311 8.6e-34 146.7 83 78.3
Ah.02g112890 Amaranthus hybridus HOM05D001372 ORTHO05D007311 1.1e-33 146.4 82 75.6
Ah.02g112920 Amaranthus hybridus HOM05D001372 ORTHO05D007311 1.1e-33 146.4 82 75.6
arahy.Tifrunner.gnm1.ann1.34YEZP Arachis hypogaea HOM05D001372 ORTHO05D007311 1.1e-33 146.4 83 78.3
CsaV3_7G010120 Cucumis sativus L. HOM05D001372 ORTHO05D007311 1.5e-33 146.0 85 77.6
arahy.Tifrunner.gnm1.ann1.FTA1AJ Arachis hypogaea HOM05D001372 ORTHO05D007311 2.5e-33 145.2 81 79.0
Nn2g15585 Nelumbo nucifera HOM05D001372 ORTHO05D007311 2.5e-33 145.2 85 75.3
Solyc01g109070.2 Solanum lycopersicum HOM05D001372 ORTHO05D007311 2.5e-33 145.2 83 78.3
Sopen01g051270 Solanum pennellii HOM05D001372 ORTHO05D007311 2.5e-33 145.2 83 78.3
Gorai.008G044200 Gossypium raimondii HOM05D001372 ORTHO05D007311 3.3e-33 144.8 82 74.4
Hma1.2p1_1353F.1_g277710 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 3.3e-33 144.8 85 76.5
EL10Ac5g10871 Beta vulgaris HOM05D001372 ORTHO05D007311 4.3e-33 144.4 80 76.2
Eucgr.F03329 Eucalyptus grandis HOM05D001372 ORTHO05D007311 4.3e-33 144.4 82 75.6
HanXRQChr03g0074331 Helianthus annuus HOM05D001372 ORTHO05D007311 5.6e-33 144.1 82 73.2
Duzib052G0457 Durio zibethinus HOM05D001372 ORTHO05D007311 7.3e-33 143.7 82 74.4
Gohir.D12G042200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 7.3e-33 143.7 82 73.2
Lj3g0024398 Lotus japonicus HOM05D001372 ORTHO05D007311 7.3e-33 143.7 86 74.4
Manes.15G145700 Manihot esculenta HOM05D001372 ORTHO05D007311 7.3e-33 143.7 86 76.7
Ah.11g045560 Amaranthus hybridus HOM05D001372 ORTHO05D007311 9.5e-33 143.3 82 74.4
ClCG02G005510 Citrullus lanatus HOM05D001372 ORTHO05D007311 9.5e-33 143.3 106 65.1
MELO3C018416.2 Cucumis melo HOM05D001372 ORTHO05D007311 9.5e-33 143.3 85 75.3
Migut.N01213 Erythranthe guttata HOM05D001372 ORTHO05D007311 9.5e-33 143.3 82 75.6
Gohir.A09G221800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 9.5e-33 143.3 82 74.4
COL.COLO4_17775 Corchorus olitorius HOM05D001372 ORTHO05D007311 1.2e-32 142.9 82 73.2
Phvul.011G050400 Phaseolus vulgaris HOM05D001372 ORTHO05D007311 1.2e-32 142.9 86 74.4
Thecc.02G028600 Theobroma cacao HOM05D001372 ORTHO05D007311 1.2e-32 142.9 82 74.4
Lsat_1_v5_gn_9_109081 Lactuca sativa HOM05D001372 ORTHO05D007311 1.6e-32 142.5 82 73.2
Duzib132G0052 Durio zibethinus HOM05D001372 ORTHO05D007311 2.1e-32 142.1 82 74.4
Medtr4g068370 Medicago truncatula HOM05D001372 ORTHO05D007311 2.1e-32 142.1 82 76.8
Dinv28822 Davidia involucrata HOM05D001372 ORTHO05D007311 2.8e-32 141.7 85 75.3
Glyma.12G048200 Glycine max HOM05D001372 ORTHO05D007311 2.8e-32 141.7 86 73.3
CAN.G134.164 Capsicum annuum HOM05D001372 ORTHO05D007311 3.6e-32 141.4 82 74.4
AUR62021787 Chenopodium quinoa HOM05D001372 ORTHO05D007311 3.6e-32 141.4 82 73.2
Peaxi162Scf00016g00132 Petunia axillaris HOM05D001372 ORTHO05D007311 3.6e-32 141.4 82 76.8
Psat1g039160 Pisum sativum HOM05D001372 ORTHO05D007311 3.6e-32 141.4 86 72.1
ATR0807G173 Amborella trichopoda HOM05D001372 ORTHO05D007311 4.7e-32 141.0 82 72.0
AUR62008308 Chenopodium quinoa HOM05D001372 ORTHO05D007311 4.7e-32 141.0 82 72.0
AUR62008309 Chenopodium quinoa HOM05D001372 ORTHO05D007311 4.7e-32 141.0 82 72.0
Gohir.A12G030200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 4.7e-32 141.0 82 72.0
TWI38G1937 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 4.7e-32 141.0 82 72.0
vmacro02159 Vaccinium macrocarpon HOM05D001193 ORTHO05D007311 4.7e-32 141.0 87 71.3
CDE07G0396 Ceratophyllum demersum HOM05D001372 ORTHO05D007311 6.2e-32 140.6 84 72.6
BcaC01g03046 Brassica carinata HOM05D001372 ORTHO05D007311 8.1e-32 140.2 83 71.1
AUR62025645 Chenopodium quinoa HOM05D001372 ORTHO05D007311 8.1e-32 140.2 82 72.0
Sed0000118 Sechium edule HOM05D001372 ORTHO05D007311 8.1e-32 140.2 85 74.1
Manes.17G096600 Manihot esculenta HOM05D001372 ORTHO05D007311 1.1e-31 139.8 86 74.4
Oeu010568.1 Olea europaea HOM05D001372 ORTHO05D007311 1.1e-31 139.8 82 72.0
Rhsim11G0170800 Rhododendron simsii HOM05D001193 ORTHO05D007311 1.1e-31 139.8 80 77.5
TWI38G0580 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 1.1e-31 139.8 82 72.0
CANSAT80G1477 Cannabis sativa HOM05D001372 ORTHO05D007311 1.4e-31 139.4 84 72.6
Cpa.g.sc62.81 Carica papaya HOM05D001372 ORTHO05D007311 1.4e-31 139.4 82 78.0
Medtr0311s0010 Medicago truncatula HOM05D001372 ORTHO05D007311 1.4e-31 139.4 82 74.4
CAN.G322.87 Capsicum annuum HOM05D001372 ORTHO05D007311 1.8e-31 139.0 83 77.1
COL.COLO4_17203 Corchorus olitorius HOM05D001372 ORTHO05D007311 1.8e-31 139.0 82 70.7
DCAR_022076 Daucus carota HOM05D001372 ORTHO05D007311 1.8e-31 139.0 83 74.7
Potri.009G109100 Populus trichocarpa HOM05D001372 ORTHO05D007311 1.8e-31 139.0 85 74.1
CDE09G1189 Ceratophyllum demersum HOM05D001455 ORTHO05D001587 2.3e-31 138.7 84 72.6
Hma1.2p1_0584F.1_g183260 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 3.1e-31 138.3 82 74.4
SalBow3G1216 Salvia bowleyana HOM05D001372 ORTHO05D007311 3.1e-31 138.3 82 74.4
SalBow5G1173 Salvia bowleyana HOM05D001372 ORTHO05D007311 3.1e-31 138.3 82 74.4
C03p56710 Brassica napus HOM05D001372 ORTHO05D002010 5.2e-31 137.5 79 73.4
BolC3t17955H Brassica oleracea HOM05D001372 ORTHO05D002010 5.2e-31 137.5 79 73.4
CiPaw.05G058700 Carya illinoinensis HOM05D001372 ORTHO05D007311 5.2e-31 137.5 85 72.9
BraA03t13697Z Brassica rapa HOM05D001372 ORTHO05D002010 8.9e-31 136.7 79 73.4
Cfa004947 Carpinus fangiana HOM05D001372 ORTHO05D007311 8.9e-31 136.7 85 70.6
Atru.chr5.2877 Acer truncatum HOM05D001372 ORTHO05D007311 1.2e-30 136.3 81 72.8
BcaB03g16342 Brassica carinata HOM05D001372 ORTHO05D007311 1.2e-30 136.3 82 72.0
CSS0001418 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 1.2e-30 136.3 82 74.4
CSS0020019 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 1.2e-30 136.3 82 74.4
Cc02_g18240 Coffea canephora HOM05D001372 ORTHO05D007311 1.2e-30 136.3 83 71.1
Sp3g29230 Schrenkiella parvula HOM05D001372 ORTHO05D007311 1.5e-30 136.0 83 73.5
BcaB08g34618 Brassica carinata HOM05D001372 ORTHO05D007311 2.0e-30 135.6 82 70.7
Haze_02464 Corylus avellana HOM05D001372 ORTHO05D007311 2.0e-30 135.6 85 70.6
Nitab4.5_0008194g0080 Nicotiana tabacum HOM05D001372 ORTHO05D007311 2.0e-30 135.6 77 81.8
PGR042G3549 Punica granatum HOM05D001372 ORTHO05D007311 2.0e-30 135.6 83 71.1
Sabra09G0083300 Salix brachista HOM05D001372 ORTHO05D007311 2.0e-30 135.6 85 71.8
A07p04870 Brassica napus HOM05D001372 ORTHO05D007311 2.6e-30 135.2 82 70.7
Eucgr.G00508 Eucalyptus grandis HOM05D001372 ORTHO05D007311 2.6e-30 135.2 82 69.5
CARHR106260 Cardamine hirsuta HOM05D001372 ORTHO05D007311 3.4e-30 134.8 82 72.0
Eucgr.G01534 Eucalyptus grandis HOM05D001372 ORTHO05D007311 3.4e-30 134.8 82 69.5
Oeu003708.1 Olea europaea HOM05D001372 ORTHO05D007311 3.4e-30 134.8 79 72.2
THA.LOC104807341 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 3.4e-30 134.8 82 72.0
A03p45650 Brassica napus HOM05D001372 ORTHO05D002010 4.4e-30 134.4 79 72.2
Carub.0003s2981 Capsella rubella HOM05D001372 ORTHO05D007311 4.4e-30 134.4 83 71.1
Haze_02462 Corylus avellana HOM05D001372 ORTHO05D007311 4.4e-30 134.4 82 72.0
unitig_60.g25449 Utricularia gibba HOM05D001372 ORTHO05D007311 4.4e-30 134.4 76 76.3
Thhalv10023083m.g Eutrema salsugineum HOM05D001372 ORTHO05D002010 7.5e-30 133.7 75 76.0
Sc14g0001710 Simmondsia chinensis HOM05D001372 ORTHO05D007311 7.5e-30 133.7 83 69.9
BraA07t28279Z Brassica rapa HOM05D001372 ORTHO05D007311 9.8e-30 133.3 81 70.4
Psat2g085760 Pisum sativum HOM05D001372 ORTHO05D007311 9.8e-30 133.3 86 68.6
BcaC06g36100 Brassica carinata HOM05D001372 ORTHO05D007311 1.3e-29 132.9 82 70.7
C07p07850 Brassica napus HOM05D001372 ORTHO05D007311 1.3e-29 132.9 82 70.7
BolC7t41203H Brassica oleracea HOM05D001372 ORTHO05D007311 1.3e-29 132.9 82 70.7
THA.LOC104819597 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 1.3e-29 132.9 83 74.7
AL3G47750 Arabidopsis lyrata HOM05D001372 ORTHO05D002010 1.7e-29 132.5 79 73.4
Nn7g36402 Nelumbo nucifera HOM05D001372 ORTHO05D007311 1.7e-29 132.5 85 71.8
Nitab4.5_0004946g0010 Nicotiana tabacum HOM05D001372 ORTHO05D007311 2.2e-29 132.1 79 75.9
QL11p039238 Quercus lobata HOM05D001372 ORTHO05D007311 2.2e-29 132.1 82 69.5
Aqoxy6G00480 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 3.7e-29 131.3 82 68.3
AT2G15910 Arabidopsis thaliana HOM05D001372 ORTHO05D002010 3.7e-29 131.3 72 79.2
Gorai.006G245400 Gossypium raimondii HOM05D001372 ORTHO05D007311 3.7e-29 131.3 82 69.5
CSS0021822 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 6.4e-29 130.6 83 69.9
Psat5g239440 Pisum sativum HOM05D001372 ORTHO05D007311 8.3e-29 130.2 63 87.3
Psat5g295360 Pisum sativum HOM05D001372 ORTHO05D007311 8.3e-29 130.2 63 87.3
Aqoxy230s002 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 1.1e-28 129.8 82 68.3
Aqoxy4G03213 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 1.1e-28 129.8 82 68.3
Pp3c17_11290 Physcomitrium patens HOM05D001372 ORTHO05D007311 1.4e-28 129.4 92 63.0
Aa31LG8G13440 Aethionema arabicum HOM05D001372 ORTHO05D007311 3.2e-28 128.3 83 69.9
RcHm_v2.0_Chr6g0259971 Rosa chinensis HOM05D001372 ORTHO05D007311 3.2e-28 128.3 60 93.3
Gohir.A04G115800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 2.7e-27 125.2 72 70.8
HPP92_025391 Vanilla planifolia HOM05D001372 ORTHO05D007311 3.5e-27 124.8 70 74.3
Mapoly0002s0208 Marchantia polymorpha HOM05D001372 ORTHO05D007311 1.7e-26 122.5 75 72.0
Zm00001eb389160 Zea mays HOM05D001372 ORTHO05D007311 3.0e-26 121.7 74 71.6
Lsat_1_v5_gn_2_32760 Lactuca sativa HOM05D001372 ORTHO05D007311 6.6e-26 120.6 72 72.2
Os06g0661600 Oryza sativa ssp. japonica HOM05D001372 ORTHO05D007311 4.3e-25 117.9 71 74.6
Cre16.g653850 Chlamydomonas reinhardtii HOM05D001372 ORTHO05D007311 5.6e-25 117.5 78 65.4
AagrBONN_evm.TU.Sc2ySwM_344.4003 Anthoceros agrestis HOM05D001372 ORTHO05D007311 2.1e-24 115.5 73 68.5
arahy.Tifrunner.gnm1.ann1.YI8NBA Arachis hypogaea HOM05D018927 ORTHO05D003639 2.3e-23 112.1 54 88.9
SMO111G0193 Selaginella moellendorffii HOM05D001372 ORTHO05D007311 3.1e-23 111.7 58 79.3
Nitab4.5_0001401g0190 Nicotiana tabacum HOM05D001372 ORTHO05D007311 8.9e-23 110.2 51 92.2
SHI05448 Sapria himalayana HOM05D001372 ORTHO05D007311 2.2e-21 105.5 52 78.8
Zm00001eb274880 Zea mays HOM05D001372 ORTHO05D007311 1.4e-20 102.8 54 77.8
MCO08G009 Micromonas commoda HOM05D001372 ORTHO05D007311 1.6e-19 99.4 66 57.6
HanXRQChr07g0193971 Helianthus annuus HOM05D001372 ORTHO05D007311 3.5e-19 98.2 56 67.9
PRCOL_00006747 Prasinoderma coloniale HOM05D001372 ORTHO05D007311 8.1e-16 87.0 59 59.3
Cc02_g18230 Coffea canephora HOM05D001372 ORTHO05D007311 3.4e-14 81.6 44 75.0


User provided reference genes

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