Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G0812 Fragaria x ananassa HOM05D002536 ORTHO05D008091 5.6e-85 317.8 184 100.0
FAN23G2237 Fragaria x ananassa HOM05D002536 ORTHO05D008091 8.9e-67 257.3 264 61.0
FvH4_1g30050 Fragaria vesca HOM05D002536 ORTHO05D008091 4.9e-65 251.5 264 64.8
FAN19G1396 Fragaria x ananassa HOM05D002536 ORTHO05D008091 4.9e-65 251.5 264 64.8
FAN26G2179 Fragaria x ananassa HOM05D002536 ORTHO05D008091 2.7e-63 245.7 264 63.6
RcHm_v2.0_Chr3g0492091 Rosa chinensis HOM05D002536 ORTHO05D008091 3.1e-59 232.3 264 61.0
Prupe.3G152500 Prunus persica HOM05D002536 ORTHO05D008091 4.6e-55 218.4 264 54.2
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 6.6e-54 214.5 264 53.8
QL05p059463 Quercus lobata HOM05D002536 ORTHO05D008091 7.3e-53 211.1 240 52.1
Cfa007856 Carpinus fangiana HOM05D002536 ORTHO05D008091 2.8e-52 209.1 264 51.9
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 1.8e-51 206.5 264 51.5
CiPaw.04G045700 Carya illinoinensis HOM05D002536 ORTHO05D008091 5.3e-51 204.9 264 52.7
TAR622G0880 Trochodendron aralioides HOM05D002536 ORTHO05D008091 2.6e-50 202.6 264 47.3
QL05p059601 Quercus lobata HOM05D002536 ORTHO05D008091 1.7e-49 199.9 263 49.8
QL05p059839 Quercus lobata HOM05D002536 ORTHO05D008091 2.9e-49 199.1 263 50.6
Lsat_1_v5_gn_4_154760 Lactuca sativa HOM05D002536 ORTHO05D008091 1.1e-48 197.2 265 49.1
GSVIVG01030878001 Vitis vinifera HOM05D002536 ORTHO05D008091 1.9e-48 196.4 264 50.4
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla HOM05D002536 ORTHO05D008091 2.4e-48 196.1 264 54.2
GSVIVG01030879001 Vitis vinifera HOM05D002536 ORTHO05D008091 5.4e-48 194.9 264 50.4
MELO3C020303.2 Cucumis melo HOM05D002536 ORTHO05D008091 7.1e-48 194.5 264 45.1
Actinidia15922 Actinidia chinensis HOM05D002536 ORTHO05D008091 2.1e-47 193.0 264 50.4
Dinv19004 Davidia involucrata HOM05D002536 ORTHO05D008091 2.1e-47 193.0 264 53.8
QL05p058873 Quercus lobata HOM05D002536 ORTHO05D008091 2.1e-47 193.0 263 49.0
COL.COLO4_16592 Corchorus olitorius HOM05D002536 ORTHO05D008091 2.7e-47 192.6 270 50.0
HanXRQChr11g0325231 Helianthus annuus HOM05D002536 ORTHO05D008091 3.5e-47 192.2 264 46.6
Lj2P435T31 Lonicera japonica HOM05D002536 ORTHO05D008091 4.6e-47 191.8 262 46.9
Psat2g023480 Pisum sativum HOM05D002536 ORTHO05D008091 1.8e-46 189.9 264 44.7
Ciclev10012168m.g Citrus clementina HOM05D002536 ORTHO05D008091 2.3e-46 189.5 265 49.8
Atru.chr1.1780 Acer truncatum HOM05D002536 ORTHO05D008091 3.0e-46 189.1 264 45.8
Atru.chr1.1783 Acer truncatum HOM05D002536 ORTHO05D008091 3.0e-46 189.1 264 45.8
Sabra04G0061700 Salix brachista HOM05D002536 ORTHO05D008091 5.1e-46 188.3 267 45.3
Lalb_Chr03g0036071 Lupinus albus HOM05D002536 ORTHO05D008091 8.7e-46 187.6 264 44.3
Nn3g18195 Nelumbo nucifera HOM05D002536 ORTHO05D008091 8.7e-46 187.6 264 48.1
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea HOM05D002536 ORTHO05D008091 1.1e-45 187.2 264 44.7
Ca_06135_v3 Cicer arietinum L. HOM05D002536 ORTHO05D008091 1.1e-45 187.2 264 45.1
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 1.5e-45 186.8 264 44.3
FAN28G0948 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.5e-45 186.8 216 56.9
Medtr5g086010 Medicago truncatula HOM05D002536 ORTHO05D008091 1.5e-45 186.8 264 43.9
Potri.004G091600 Populus trichocarpa HOM05D002536 ORTHO05D008091 1.9e-45 186.4 266 45.1
Thecc.02G292900 Theobroma cacao HOM05D002536 ORTHO05D008091 1.9e-45 186.4 270 52.6
Sed0014940 Sechium edule HOM05D002536 ORTHO05D008091 2.5e-45 186.0 264 44.3
CsaV3_3G017670 Cucumis sativus L. HOM05D002536 ORTHO05D008091 3.3e-45 185.7 264 44.3
ECA232G4028 Erigeron canadensis HOM05D002536 ORTHO05D008091 3.3e-45 185.7 264 47.7
Hund13690 Selenicereus undatus HOM05D002536 ORTHO05D008091 3.3e-45 185.7 264 47.7
Ah.10g037920 Amaranthus hybridus HOM05D002536 ORTHO05D008091 5.6e-45 184.9 264 45.1
CANSAT78G0797 Cannabis sativa HOM05D002536 ORTHO05D008091 5.6e-45 184.9 264 47.0
TPR.G11790 Trifolium pratense HOM05D002536 ORTHO05D008091 5.6e-45 184.9 264 45.1
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 7.4e-45 184.5 254 49.2
Duzib248G1146 Durio zibethinus HOM05D002536 ORTHO05D008091 7.4e-45 184.5 270 52.6
Medtr5g087440 Medicago truncatula HOM05D002536 ORTHO05D008091 9.6e-45 184.1 264 43.6
PGR004G1229 Punica granatum HOM05D002536 ORTHO05D008091 9.6e-45 184.1 265 47.9
ClCG05G010840 Citrullus lanatus HOM05D002536 ORTHO05D008091 2.8e-44 182.6 264 43.6
Gohir.A04G142800 Gossypium hirsutum HOM05D002536 ORTHO05D008091 3.7e-44 182.2 270 51.1
Gohir.D04G186100 Gossypium hirsutum HOM05D002536 ORTHO05D008091 3.7e-44 182.2 270 51.1
Gorai.012G182500 Gossypium raimondii HOM05D002536 ORTHO05D008091 3.7e-44 182.2 270 51.1
Rhsim10G0078900 Rhododendron simsii HOM05D002536 ORTHO05D008091 3.7e-44 182.2 266 44.7
Sc10g0000870 Simmondsia chinensis HOM05D002536 ORTHO05D008091 4.8e-44 181.8 264 48.5
AUR62023248 Chenopodium quinoa HOM05D002536 ORTHO05D008091 1.8e-43 179.9 264 43.9
EL10Ac2g04494 Beta vulgaris HOM05D002536 ORTHO05D008091 3.1e-43 179.1 264 44.7
Cc07_g08230 Coffea canephora HOM05D002536 ORTHO05D008091 3.1e-43 179.1 264 42.4
VMungo1309G0890 Vigna mungo HOM05D002536 ORTHO05D008091 3.1e-43 179.1 264 45.8
LjContig00564g0008816 Lotus japonicus HOM05D002536 ORTHO05D008091 4.0e-43 178.7 264 43.6
TWI53G1346 Tripterygium wilfordii HOM05D002536 ORTHO05D008091 9.0e-43 177.6 264 43.9
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 1.5e-42 176.8 263 44.5
Sp6g26760 Schrenkiella parvula HOM05D002536 ORTHO05D008091 5.8e-42 174.9 267 46.4
Eucgr.F02816 Eucalyptus grandis HOM05D002536 ORTHO05D008091 1.7e-41 173.3 264 41.7
Phvul.004G133300 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 2.2e-41 172.9 265 45.3
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea HOM05D002536 ORTHO05D008091 2.9e-41 172.6 236 44.9
Glyma.14G164000 Glycine max HOM05D002536 ORTHO05D008091 8.4e-41 171.0 239 50.2
Phvul.008G162400 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 8.4e-41 171.0 264 45.5
Aqoxy3G00142 Aquilegia oxysepala HOM05D002536 ORTHO05D008091 1.1e-40 170.6 264 42.0
Thhalv10014009m.g Eutrema salsugineum HOM05D002536 ORTHO05D008091 1.1e-40 170.6 267 45.7
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 1.4e-40 170.2 266 42.9
BolC2t06821H Brassica oleracea HOM05D002536 ORTHO05D008091 2.5e-40 169.5 265 44.9
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 3.2e-40 169.1 235 44.3
Oeu047422.1 Olea europaea HOM05D002536 ORTHO05D008091 1.2e-39 167.2 264 45.8
MSTRG.23612 Avicennia marina HOM05D002536 ORTHO05D008091 1.6e-39 166.8 264 40.5
A02p04220 Brassica napus HOM05D002536 ORTHO05D008091 1.6e-39 166.8 267 44.6
BraA02t05385Z Brassica rapa HOM05D002536 ORTHO05D008091 1.6e-39 166.8 267 44.6
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 1.0e-38 164.1 266 39.8
Cpa.g.sc116.19 Carica papaya HOM05D002536 ORTHO05D008091 1.8e-38 163.3 264 47.3
Os01g0125700 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D008091 3.0e-38 162.5 255 47.1
SalBow3G4287 Salvia bowleyana HOM05D002536 ORTHO05D008091 5.1e-38 161.8 264 39.8
C02p09100 Brassica napus HOM05D002536 ORTHO05D008091 1.9e-37 159.8 272 43.4
Nitab4.5_0002456g0160 Nicotiana tabacum HOM05D002536 ORTHO05D008091 2.5e-37 159.5 265 40.4
CAN.G625.80 Capsicum annuum HOM05D002536 ORTHO05D008091 3.3e-37 159.1 265 40.0
Nitab4.5_0002248g0020 Nicotiana tabacum HOM05D002536 ORTHO05D008091 4.3e-37 158.7 265 40.0
Solyc02g091320.4 Solanum lycopersicum HOM05D002536 ORTHO05D008091 5.7e-37 158.3 265 41.1
Manes.01G115200 Manihot esculenta HOM05D002536 ORTHO05D008091 7.4e-37 157.9 234 44.9
Sopen02g035940 Solanum pennellii HOM05D002536 ORTHO05D008091 7.4e-37 157.9 265 41.1
PGSC0003DMG400030642 Solanum tuberosum HOM05D002536 ORTHO05D008091 9.6e-37 157.5 265 40.0
Migut.H00262 Erythranthe guttata HOM05D002536 ORTHO05D008091 2.8e-36 156.0 264 39.4
Peaxi162Scf00803g00531 Petunia axillaris HOM05D002536 ORTHO05D008091 4.8e-36 155.2 264 39.0
CARHR195750 Cardamine hirsuta HOM05D002536 ORTHO05D008091 1.0e-33 147.5 270 41.5
ATR0041G006 Amborella trichopoda HOM05D002536 ORTHO05D008091 3.8e-33 145.6 254 42.5
Carub.0006s1568 Capsella rubella HOM05D002536 ORTHO05D008091 6.5e-33 144.8 266 40.6
AL6G28530 Arabidopsis lyrata HOM05D002536 ORTHO05D008091 5.5e-32 141.7 266 41.0
CDE07G0699 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 4.6e-31 138.7 265 40.8
PSO478G1642 Papaver somniferum HOM05D002536 ORTHO05D008091 6.1e-31 138.3 268 36.9
PSO782G0049 Papaver somniferum HOM05D002536 ORTHO05D008091 1.0e-30 137.5 270 36.7
SHI17045 Sapria himalayana HOM05D002536 ORTHO05D008091 9.7e-29 131.0 266 44.4
AT5G17460 Arabidopsis thaliana HOM05D002536 ORTHO05D008091 1.6e-28 130.2 234 41.5
SGA_v2.0_scaffold6G03263 Striga asiatica HOM05D002536 ORTHO05D008091 3.1e-27 125.9 257 35.8
SGA_v2.0_scaffold6G03262 Striga asiatica HOM05D002536 ORTHO05D008091 3.8e-25 119.0 259 31.7
SGA_v2.0_scaffold6G03266 Striga asiatica HOM05D002536 ORTHO05D008091 3.8e-25 119.0 239 37.7
Zm00001eb334950 Zea mays HOM05D002536 ORTHO05D008091 3.6e-23 112.5 170 42.4
AUR62023202 Chenopodium quinoa HOM05D002536 ORTHO05D008091 7.9e-23 111.3 209 38.3
A10p21940 Brassica napus HOM05D002536 ORTHO05D008091 3.9e-22 109.0 76 78.9
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 1.1e-21 107.5 76 67.1
BcaC03g13522 Brassica carinata HOM05D002536 ORTHO05D008091 2.5e-21 106.3 232 34.1
Glyma.13G079200 Glycine max HOM05D002536 ORTHO05D008091 5.3e-19 98.6 89 56.2
MD09G1260800 Malus domestica HOM05D002536 ORTHO05D008091 8.5e-17 91.3 64 75.0
HPP92_000766 Vanilla planifolia HOM05D002536 ORTHO05D008091 1.8e-14 83.6 90 52.2
SEGI_34238 Sequoiadendron giganteum HOM05D002536 ORTHO05D008091 8.8e-14 81.3 265 26.8
MD09G1260900 Malus domestica HOM05D002536 ORTHO05D008091 1.3e-12 77.4 63 65.1
unitig_899.g15351 Utricularia gibba HOM05D002536 ORTHO05D008091 7.7e-10 68.2 208 29.3
SGA_v2.0_scaffold6G03268 Striga asiatica HOM05D002536 ORTHO05D008091 3.8e-09 65.9 227 30.0
MBI16_g46274_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D008091 1.8e-06 57.0 155 30.3


User provided reference genes

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