Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 2697.9 1384 100.0
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 2407.1 1413 89.2
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 2380.1 1286 94.9
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 0.0e+00 2367.8 1416 87.6
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 2351.2 1273 94.7
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 0.0e+00 2111.6 1283 85.5
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 0.0e+00 1726.8 1295 71.0
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1681.0 1294 69.5
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1679.8 1282 69.0
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 0.0e+00 1320.4 1287 57.8
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 0.0e+00 1307.0 1295 57.3
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 0.0e+00 1302.3 1296 56.7
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 0.0e+00 1297.3 1314 55.0
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 0.0e+00 1269.2 1281 55.7
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 0.0e+00 1263.4 1288 55.0
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 0.0e+00 1261.9 1300 55.4
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 0.0e+00 1246.5 1307 53.9
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 0.0e+00 1243.8 1302 54.5
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1221.1 1330 53.2
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 0.0e+00 1217.6 1288 53.6
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1213.4 1279 53.3
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1211.4 1282 53.6
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1178.7 1319 52.2
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1171.4 1260 53.2
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1164.4 1257 53.1
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 0.0e+00 1157.1 1317 51.6
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1143.6 1301 51.6
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 0.0e+00 1143.6 1287 51.4
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1128.2 1300 51.3
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 0.0e+00 1104.0 1317 49.1
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1097.0 1251 51.7
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 0.0e+00 1085.1 1276 49.6
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 0.0e+00 1075.5 1290 49.9
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 1.4e-308 1063.5 1416 46.3
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 5.1e-308 1061.6 1299 48.7
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 7.4e-307 1057.7 1287 48.6
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 1.0e-303 1047.3 1306 46.9
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 2.2e-303 1046.2 1297 48.1
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 1.9e-302 1043.1 1297 47.6
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 1.9e-302 1043.1 1259 48.6
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 2.0e-299 1033.1 1290 47.3
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 5.7e-299 1031.6 1297 47.0
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 1.8e-297 1026.5 1296 46.8
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 9.1e-297 1024.2 1280 48.0
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 5.9e-296 1021.5 1297 46.5
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 5.2e-292 1008.4 1289 46.6
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 9.7e-291 1004.2 1284 46.0
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 3.7e-290 1002.3 1293 46.6
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 4.8e-290 1001.9 1214 47.9
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 1.6e-288 996.9 1292 46.4
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 5.9e-288 995.0 1284 46.0
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 1.7e-287 993.4 1295 45.3
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 1.1e-286 990.7 1299 48.3
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 1.1e-286 990.7 1229 47.3
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 3.2e-286 989.2 1281 45.7
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 2.7e-285 986.1 1150 51.1
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 5.2e-284 981.9 1290 45.4
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 2.4e-281 973.0 1266 45.6
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 3.1e-281 972.6 1268 45.4
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 2.0e-280 969.9 1269 46.0
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 8.5e-279 964.5 1274 44.7
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 4.2e-278 962.2 1286 44.6
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 2.0e-275 953.4 1314 44.3
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 1.8e-273 946.8 1273 44.6
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 1.0e-271 941.0 1253 45.3
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 7.2e-270 934.9 1269 44.4
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 7.8e-264 914.8 1291 43.2
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 5.2e-260 902.1 1243 44.7
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 2.6e-259 899.8 1295 43.6
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 6.0e-256 888.6 1230 44.5
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 3.3e-254 882.9 1305 42.2
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 1.1e-241 841.3 1298 42.7
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 1.6e-237 827.4 1248 40.9
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 3.8e-234 816.2 1290 41.2
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 9.0e-228 795.0 1282 40.6
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 1.4e-225 787.7 1278 40.8
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 5.8e-219 765.8 1270 40.2
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 2.1e-208 730.7 1286 37.6
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 3.9e-207 726.5 1261 41.2
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 6.1e-200 702.6 690 57.1
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 1.4e-196 691.4 1078 40.7
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 3.4e-195 686.8 704 54.4
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 1.1e-193 681.8 1269 37.4
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 3.6e-192 676.8 1272 36.0
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 3.0e-183 647.1 1181 36.2
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 9.7e-182 642.1 1197 36.8
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 2.6e-179 634.0 1245 36.0
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 3.5e-179 633.6 1243 36.2
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 2.3e-175 620.9 700 52.4
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 5.7e-174 616.3 1272 34.9
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 1.5e-169 601.7 1231 35.1
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 7.2e-169 599.4 698 50.4
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 8.8e-167 592.4 1269 35.5
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 5.4e-156 556.6 1110 35.0
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 1.1e-148 532.3 583 49.7
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 1.4e-143 515.4 563 49.7
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 8.9e-143 512.7 733 44.1
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 5.6e-137 493.4 499 54.5
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 4.6e-131 473.8 791 41.7
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 3.9e-130 470.7 778 40.4
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 2.1e-128 464.9 731 42.3
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 2.3e-106 391.7 706 33.6
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 3.3e-105 387.9 678 41.6
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 3.7e-96 357.8 685 38.1
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 1.1e-95 356.3 793 33.3
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 1.5e-94 352.4 718 37.6
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 5.8e-94 350.5 369 52.0
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 1.9e-89 335.5 901 30.6
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 2.0e-73 282.3 897 29.4
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 4.5e-70 271.2 799 28.2
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 3.2e-68 265.0 604 31.5
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 5.5e-44 184.5 281 39.1
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 3.7e-40 171.8 286 37.4
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 3.8e-37 161.8 601 30.6
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 2.1e-35 156.0 628 29.1
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 8.3e-24 117.5 113 54.0
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 8.3e-24 117.5 251 29.1
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 1.1e-23 117.1 376 24.5
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 9.2e-23 114.0 562 28.1
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 2.7e-22 112.5 209 35.9
Pp3c26_5160 Physcomitrium patens HOM05D006144 ORTHO05D006357 4.6e-22 111.7 379 24.8
Ca_06605_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 7.8e-22 110.9 309 36.2
Ca_06861_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 7.8e-22 110.9 309 36.2
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 1.4e-18 100.1 392 23.7
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 8.3e-16 90.9 506 25.5
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 8.3e-16 90.9 540 27.0
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 2.1e-14 86.3 337 27.6
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 2.1e-14 86.3 562 24.2
BcaB02g09983 Brassica carinata HOM05D012861 ORTHO05D006357 6.0e-14 84.7 258 30.2
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 3.0e-13 82.4 558 26.0
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 8.6e-13 80.9 558 26.0
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 1.5e-12 80.1 536 26.7
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 1.5e-12 80.1 536 26.7
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 7.3e-12 77.8 312 26.0
Sabra05G0109200 Salix brachista HOM05D006144 ORTHO05D006357 2.1e-11 76.3 188 38.3
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 4.7e-11 75.1 181 32.6
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 8.1e-11 74.3 369 21.4
Sc11g0005350 Simmondsia chinensis HOM05D006144 ORTHO05D006357 1.1e-10 73.9 136 31.6
Medtr8g079870 Medicago truncatula HOM05D006144 ORTHO05D006357 1.1e-07 63.9 92 43.5
SEGI_01818 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 1.4e-07 63.5 90 42.2


User provided reference genes

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