Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G0660 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.0e-145 520.0 250 100.0
FAN28G0183 Fragaria x ananassa HOM05D000876 ORTHO05D000285 5.5e-27 125.6 199 43.2
FvH4_4g20923 Fragaria vesca HOM05D000876 ORTHO05D000285 5.9e-21 105.5 77 68.8
FvH4_5g23913 Fragaria vesca HOM05D000876 ORTHO05D000285 5.9e-21 105.5 77 68.8
FAN26G1613 Fragaria x ananassa HOM05D000876 ORTHO05D000285 5.9e-21 105.5 77 68.8
FAN15G0148 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.6e-18 97.4 58 79.3
FAN04G1353 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.0e-16 90.5 75 58.7
FAN09G4256 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.0e-16 90.5 114 43.0
FvH4_2g31320 Fragaria vesca HOM05D000876 ORTHO05D022651 2.2e-15 87.0 76 55.3
FvH4_7g08972 Fragaria vesca HOM05D000876 ORTHO05D000285 2.2e-15 87.0 76 55.3
FAN03G2155 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.2e-15 87.0 76 55.3
FAN09G1076 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.8e-15 86.7 80 52.5
FAN12G1859 Fragaria x ananassa HOM05D000876 ORTHO05D000285 6.3e-15 85.5 75 56.0
FAN08G3019 Fragaria x ananassa HOM05D000876 ORTHO05D000285 8.3e-15 85.1 75 57.3
FAN22G0137 Fragaria x ananassa HOM05D000876 ORTHO05D000285 8.3e-15 85.1 76 53.9
FAN05G1224 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.8e-14 84.0 82 52.4
Gorai.002G171600 Gossypium raimondii HOM05D000876 ORTHO05D000285 2.7e-13 80.1 76 47.4
FAN09G0655 Fragaria x ananassa HOM05D000876 ORTHO05D000285 3.5e-13 79.7 77 51.9
FAN12G2878 Fragaria x ananassa HOM05D000876 ORTHO05D000285 3.5e-13 79.7 63 57.1
FAN14G5115 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.5e-13 79.3 63 57.1
RcHm_v2.0_Chr4g0406011 Rosa chinensis HOM05D000876 ORTHO05D000285 5.9e-13 79.0 64 54.7
FvH4_6g39920 Fragaria vesca HOM05D000876 ORTHO05D000285 1.0e-12 78.2 76 52.6
FAN21G2291 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.0e-12 78.2 62 56.5
Gorai.013G094800 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.5e-11 74.3 77 41.6
Nitab4.5_0012930g0010 Nicotiana tabacum HOM05D007579 ORTHO05D000285 3.2e-11 73.2 79 46.8
Gorai.001G159400 Gossypium raimondii HOM05D000876 ORTHO05D000285 7.2e-11 72.0 78 41.0
Gorai.010G124300 Gossypium raimondii HOM05D000876 ORTHO05D000285 7.2e-11 72.0 55 52.7
Gorai.005G119800 Gossypium raimondii HOM05D000876 ORTHO05D000285 2.1e-10 70.5 77 41.6
Gorai.001G187700 Gossypium raimondii HOM05D000876 ORTHO05D000285 2.8e-10 70.1 55 49.1
FAN03G1971 Fragaria x ananassa HOM05D000876 ORTHO05D000285 3.6e-10 69.7 64 51.6
Gorai.008G247700 Gossypium raimondii HOM05D000876 ORTHO05D000285 3.6e-10 69.7 127 33.1
Gorai.010G172100 Gossypium raimondii HOM05D000876 ORTHO05D000285 3.6e-10 69.7 55 49.1
Nitab4.5_0000062g0080 Nicotiana tabacum HOM05D007579 ORTHO05D000285 3.6e-10 69.7 64 51.6
FvH4_2g04530 Fragaria vesca HOM05D000034 ORTHO05D000037 8.0e-10 68.6 56 51.8
FvH4_2g11122 Fragaria vesca HOM05D000876 ORTHO05D000285 8.0e-10 68.6 56 51.8
FvH4_3g21471 Fragaria vesca HOM05D000034 ORTHO05D000285 8.0e-10 68.6 56 51.8
FAN09G0603 Fragaria x ananassa HOM05D000876 ORTHO05D000285 8.0e-10 68.6 56 51.8
FAN09G3146 Fragaria x ananassa HOM05D000876 ORTHO05D000285 8.0e-10 68.6 56 51.8
FAN09G3305 Fragaria x ananassa HOM05D000876 ORTHO05D000285 8.0e-10 68.6 56 51.8
FAN10G2856 Fragaria x ananassa HOM05D000876 ORTHO05D000285 8.0e-10 68.6 56 51.8
FAN17G2644 Fragaria x ananassa HOM05D000876 ORTHO05D000285 8.0e-10 68.6 56 51.8
FAN19G0003 Fragaria x ananassa HOM05D000876 ORTHO05D000285 8.0e-10 68.6 56 51.8
FAN20G0415 Fragaria x ananassa HOM05D000876 ORTHO05D000285 8.0e-10 68.6 56 51.8
FAN23G0726 Fragaria x ananassa HOM05D000876 ORTHO05D000285 8.0e-10 68.6 56 51.8
Gorai.006G019900 Gossypium raimondii HOM05D000876 ORTHO05D000285 8.0e-10 68.6 55 49.1
RcHm_v2.0_Chr2g0153151 Rosa chinensis HOM05D000876 ORTHO05D000285 8.0e-10 68.6 97 38.1
FvH4_1g10461 Fragaria vesca HOM05D000034 ORTHO05D000037 1.0e-09 68.2 56 50.0
FAN11G2191 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.0e-09 68.2 56 51.8
Gorai.011G190800 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.0e-09 68.2 55 47.3
Gorai.013G041500 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.0e-09 68.2 55 49.1
Gorai.013G171200 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.0e-09 68.2 87 37.9
Nitab4.5_0000072g0060 Nicotiana tabacum HOM05D000876 ORTHO05D000285 1.0e-09 68.2 64 48.4
Thecc.05G288300 Theobroma cacao HOM05D000876 ORTHO05D000285 1.0e-09 68.2 55 52.7
Gorai.005G209400 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.4e-09 67.8 57 43.9
Gorai.011G122600 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.4e-09 67.8 54 48.1
Gorai.012G109800 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.4e-09 67.8 55 47.3
FAN17G0164 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.8e-09 67.4 56 50.0
Gorai.002G128100 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.8e-09 67.4 54 48.1
Gorai.N003000 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.8e-09 67.4 55 45.5
Gorai.N004200 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.8e-09 67.4 55 45.5
Atru.chr7.239 Acer truncatum HOM05D000034 ORTHO05D000037 2.3e-09 67.0 64 46.9
Gorai.008G062400 Gossypium raimondii HOM05D000876 ORTHO05D000285 3.0e-09 66.6 55 47.3
Gorai.011G123600 Gossypium raimondii HOM05D000876 ORTHO05D000285 3.0e-09 66.6 55 47.3
Gorai.013G197100 Gossypium raimondii HOM05D000876 ORTHO05D000285 3.0e-09 66.6 55 47.3
FAN03G0686 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.0e-09 66.2 100 37.0
Gohir.D08G116700 Gossypium hirsutum HOM05D000876 ORTHO05D000285 4.0e-09 66.2 54 46.3
Gorai.007G232100 Gossypium raimondii HOM05D000876 ORTHO05D000285 4.0e-09 66.2 99 33.3
Gorai.012G070700 Gossypium raimondii HOM05D000876 ORTHO05D000285 4.0e-09 66.2 54 48.1
Duzib177G0996 Durio zibethinus HOM05D000876 ORTHO05D000285 5.2e-09 65.9 55 52.7
Gorai.007G271200 Gossypium raimondii HOM05D000876 ORTHO05D000285 5.2e-09 65.9 54 46.3
Gorai.006G154000 Gossypium raimondii HOM05D000876 ORTHO05D000285 6.8e-09 65.5 54 48.1
Gorai.013G184300 Gossypium raimondii HOM05D000876 ORTHO05D000285 6.8e-09 65.5 95 35.8
Gorai.007G258900 Gossypium raimondii HOM05D000876 ORTHO05D000285 8.8e-09 65.1 117 29.9
Atru.chr3.1562 Acer truncatum HOM05D000876 ORTHO05D000285 1.2e-08 64.7 64 45.3
Atru.chr3.1584 Acer truncatum HOM05D000876 ORTHO05D000285 1.2e-08 64.7 64 45.3
Duzib128G0904 Durio zibethinus HOM05D000876 ORTHO05D000285 1.2e-08 64.7 55 50.9
Gorai.002G171500 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.2e-08 64.7 55 49.1
Gorai.007G284700 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.2e-08 64.7 55 50.9
Prupe.8G016500 Prunus persica HOM05D000876 ORTHO05D000285 1.2e-08 64.7 79 40.5
RcHm_v2.0_Chr4g0428601 Rosa chinensis HOM05D000876 ORTHO05D000285 1.2e-08 64.7 57 52.6
Gorai.003G031500 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.5e-08 64.3 54 46.3
Gorai.005G104700 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.5e-08 64.3 63 42.9
Gorai.007G119700 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.5e-08 64.3 72 40.3
PSO339G2851 Papaver somniferum HOM05D000034 ORTHO05D000037 1.5e-08 64.3 117 35.0
Prupe.5G020800 Prunus persica HOM05D000876 ORTHO05D000285 1.5e-08 64.3 55 50.9
Gorai.004G036300 Gossypium raimondii HOM05D000876 ORTHO05D000285 2.0e-08 63.9 55 49.1
Gorai.008G032400 Gossypium raimondii HOM05D000876 ORTHO05D000285 2.0e-08 63.9 55 49.1
Gorai.013G100900 Gossypium raimondii HOM05D000876 ORTHO05D000285 2.0e-08 63.9 55 47.3
Gorai.004G036600 Gossypium raimondii HOM05D000876 ORTHO05D000285 3.4e-08 63.2 55 43.6
FvH4_3g19652 Fragaria vesca HOM05D000876 ORTHO05D000285 4.4e-08 62.8 96 38.5
FAN24G3169 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.4e-08 62.8 65 44.6
Nitab4.5_0003679g0090 Nicotiana tabacum HOM05D007579 ORTHO05D000285 4.4e-08 62.8 66 37.9
HPP92_018135 Vanilla planifolia HOM05D000876 ORTHO05D000285 4.4e-08 62.8 56 42.9
Gorai.004G173400 Gossypium raimondii HOM05D000876 ORTHO05D000285 7.5e-08 62.0 54 42.6
Ah.08g220620 Amaranthus hybridus HOM05D000876 ORTHO05D000285 9.8e-08 61.6 90 35.6
Gorai.012G085300 Gossypium raimondii HOM05D000876 ORTHO05D000285 9.8e-08 61.6 55 45.5
Gorai.006G093000 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.3e-07 61.2 87 36.8
Gorai.010G169700 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.3e-07 61.2 54 44.4
Gorai.011G083200 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.3e-07 61.2 54 44.4
QL05p031161 Quercus lobata HOM05D000034 ORTHO05D000037 1.3e-07 61.2 64 42.2
Gorai.009G029000 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.7e-07 60.8 55 43.6
Os03g0814800 Oryza sativa ssp. japonica HOM05D000876 ORTHO05D000285 1.7e-07 60.8 76 40.8
Gorai.001G157800 Gossypium raimondii HOM05D000876 ORTHO05D000285 2.2e-07 60.5 81 35.8
PSO170G6809 Papaver somniferum HOM05D000876 ORTHO05D000285 2.2e-07 60.5 67 44.8
HPP92_015385 Vanilla planifolia HOM05D000876 ORTHO05D000285 2.2e-07 60.5 89 34.8
HPP92_027007 Vanilla planifolia HOM05D000876 ORTHO05D000285 2.2e-07 60.5 89 34.8
MD15G1314200 Malus domestica HOM05D000876 ORTHO05D000285 2.8e-07 60.1 55 47.3
PSO507G0009 Papaver somniferum HOM05D000876 ORTHO05D000285 2.8e-07 60.1 112 33.0
QL04p079613 Quercus lobata HOM05D000876 ORTHO05D000285 2.8e-07 60.1 62 41.9
RcHm_v2.0_Chr5g0069971 Rosa chinensis HOM05D000876 ORTHO05D000285 2.8e-07 60.1 47 57.4
AUR62033764 Chenopodium quinoa HOM05D000876 ORTHO05D000285 3.7e-07 59.7 63 41.3
FvH4_6g38850 Fragaria vesca HOM05D000876 ORTHO05D000285 3.7e-07 59.7 64 43.8
FAN14G4311 Fragaria x ananassa HOM05D000876 ORTHO05D000285 3.7e-07 59.7 64 43.8
RcHm_v2.0_Chr1g0369261 Rosa chinensis HOM05D000876 ORTHO05D000285 3.7e-07 59.7 55 43.6
Potri.006G116400 Populus trichocarpa HOM05D000876 ORTHO05D000285 4.9e-07 59.3 111 28.8
A10p30570 Brassica napus HOM05D000876 ORTHO05D000285 6.3e-07 58.9 97 35.1
FAN14G5489 Fragaria x ananassa HOM05D000876 ORTHO05D000285 6.3e-07 58.9 70 41.4
Gorai.009G392800 Gossypium raimondii HOM05D000876 ORTHO05D000285 6.3e-07 58.9 90 33.3
Peaxi162Scf00002g02220 Petunia axillaris HOM05D000876 ORTHO05D000285 6.3e-07 58.9 62 38.7
Gorai.009G359600 Gossypium raimondii HOM05D000876 ORTHO05D000285 8.3e-07 58.5 56 46.4
Potri.004G168200 Populus trichocarpa HOM05D000876 ORTHO05D000285 8.3e-07 58.5 55 41.8
RcHm_v2.0_Chr5g0009581 Rosa chinensis HOM05D010466 ORTHO05D013607 8.3e-07 58.5 38 60.5
RcHm_v2.0_Chr7g0199281 Rosa chinensis HOM05D000876 ORTHO05D000285 8.3e-07 58.5 64 42.2
MD01G1146000 Malus domestica HOM05D000876 ORTHO05D000285 1.1e-06 58.2 55 41.8
Ah.03g141330 Amaranthus hybridus HOM05D000876 ORTHO05D000285 1.4e-06 57.8 64 37.5
Ah.10g031690 Amaranthus hybridus HOM05D000034 ORTHO05D000285 1.4e-06 57.8 64 37.5
BcaC06g32288 Brassica carinata HOM05D000876 ORTHO05D000285 1.4e-06 57.8 97 34.0
CANSAT25G2261 Cannabis sativa HOM05D000876 ORTHO05D000285 1.4e-06 57.8 80 37.5
AUR62009858 Chenopodium quinoa HOM05D000034 ORTHO05D000037 1.8e-06 57.4 63 39.7
COL.COLO4_12989 Corchorus olitorius HOM05D000876 ORTHO05D000285 1.8e-06 57.4 55 43.6
Gorai.012G128500 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.8e-06 57.4 87 32.2
Peaxi162Scf00593g00324 Petunia axillaris HOM05D007579 ORTHO05D000285 1.8e-06 57.4 56 44.6
CANSAT11G0869 Cannabis sativa HOM05D000876 ORTHO05D000285 2.4e-06 57.0 80 38.8
AUR62020810 Chenopodium quinoa HOM05D000034 ORTHO05D000037 2.4e-06 57.0 63 39.7
FvH4_7g23930 Fragaria vesca HOM05D000876 ORTHO05D000285 2.4e-06 57.0 55 43.6
FAN01G0349 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.4e-06 57.0 55 43.6
FAN06G2005 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.4e-06 57.0 55 43.6
Potri.005G163200 Populus trichocarpa HOM05D000876 ORTHO05D000285 2.4e-06 57.0 55 38.2
Solyc10g049530.3 Solanum lycopersicum HOM05D000034 ORTHO05D000037 2.4e-06 57.0 74 36.5
C09p71030 Brassica napus HOM05D000876 ORTHO05D000285 3.1e-06 56.6 97 34.0
BolC9t59867H Brassica oleracea HOM05D000876 ORTHO05D000285 3.1e-06 56.6 97 34.0
BraA10t45098Z Brassica rapa HOM05D000876 ORTHO05D000285 3.1e-06 56.6 97 34.0
COL.COLO4_03464 Corchorus olitorius HOM05D000876 ORTHO05D000285 3.1e-06 56.6 55 43.6
COL.COLO4_19726 Corchorus olitorius HOM05D000876 ORTHO05D000285 3.1e-06 56.6 55 43.6
Eucgr.G03024 Eucalyptus grandis HOM05D000876 ORTHO05D000285 3.1e-06 56.6 62 37.1
Glyma.18G030600 Glycine max HOM05D000665 ORTHO05D000285 3.1e-06 56.6 55 41.8
Gorai.006G045600 Gossypium raimondii HOM05D000876 ORTHO05D000285 3.1e-06 56.6 46 50.0
Oeu060831.2 Olea europaea HOM05D000876 ORTHO05D000285 3.1e-06 56.6 56 44.6
Potri.014G026000 Populus trichocarpa HOM05D000876 ORTHO05D000285 3.1e-06 56.6 55 38.2
HPP92_008179 Vanilla planifolia HOM05D000876 ORTHO05D000285 3.1e-06 56.6 64 35.9
CANSAT21G1745 Cannabis sativa HOM05D000876 ORTHO05D000285 4.1e-06 56.2 80 37.5
FvH4_4g07761 Fragaria vesca HOM05D000876 ORTHO05D000285 4.1e-06 56.2 64 40.6
Potri.015G137800 Populus trichocarpa HOM05D000876 ORTHO05D000285 4.1e-06 56.2 58 37.9
Prupe.1G173000 Prunus persica HOM05D000876 ORTHO05D000285 4.1e-06 56.2 55 45.5
Potri.004G097601 Populus trichocarpa HOM05D000876 ORTHO05D000285 5.4e-06 55.8 55 38.2
THA.LOC104816562 Tarenaya hassleriana HOM05D000876 ORTHO05D000285 5.4e-06 55.8 73 37.0
GSVIVG01016378001 Vitis vinifera HOM05D000876 ORTHO05D000285 5.4e-06 55.8 55 38.2
Thhalv10015821m.g Eutrema salsugineum HOM05D000876 ORTHO05D000285 7.0e-06 55.5 100 32.0
Potri.001G402200 Populus trichocarpa HOM05D000876 ORTHO05D000285 7.0e-06 55.5 55 36.4
Potri.003G006700 Populus trichocarpa HOM05D000876 ORTHO05D000285 7.0e-06 55.5 55 36.4
Potri.003G192350 Populus trichocarpa HOM05D000876 ORTHO05D000285 7.0e-06 55.5 55 36.4
Potri.004G230401 Populus trichocarpa HOM05D000876 ORTHO05D000285 7.0e-06 55.5 55 36.4
Potri.005G135800 Populus trichocarpa HOM05D000876 ORTHO05D000285 7.0e-06 55.5 55 36.4
Potri.010G019001 Populus trichocarpa HOM05D000876 ORTHO05D000285 7.0e-06 55.5 55 36.4
Potri.010G132850 Populus trichocarpa HOM05D000876 ORTHO05D000285 7.0e-06 55.5 55 36.4
Potri.011G094000 Populus trichocarpa HOM05D000876 ORTHO05D000285 7.0e-06 55.5 55 36.4
Potri.015G012100 Populus trichocarpa HOM05D000876 ORTHO05D000285 7.0e-06 55.5 55 36.4
Potri.019G061000 Populus trichocarpa HOM05D000876 ORTHO05D000285 7.0e-06 55.5 55 36.4
Solyc12g039050.3 Solanum lycopersicum HOM05D000876 ORTHO05D000285 7.0e-06 55.5 56 42.9
Glyma.11G226600 Glycine max HOM05D000665 ORTHO05D000285 9.2e-06 55.1 55 41.8
Potri.018G075600 Populus trichocarpa HOM05D000876 ORTHO05D000285 9.2e-06 55.1 55 36.4


User provided reference genes

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