Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G0526 Fragaria x ananassa HOM05D005603 ORTHO05D006944 1.7e-232 808.9 382 100.0
FvH4_1g12160 Fragaria vesca HOM05D005603 ORTHO05D006944 1.6e-227 792.3 403 93.8
FAN23G1635 Fragaria x ananassa HOM05D005603 ORTHO05D006944 1.0e-226 789.6 376 98.1
RcHm_v2.0_Chr2g0099911 Rosa chinensis HOM05D005603 ORTHO05D006944 9.1e-223 776.5 403 92.3
FAN19G0288 Fragaria x ananassa HOM05D005603 ORTHO05D006944 1.3e-221 772.7 366 98.6
Prupe.7G165200 Prunus persica HOM05D005603 ORTHO05D006944 3.6e-219 764.6 403 90.1
FAN26G2705 Fragaria x ananassa HOM05D005603 ORTHO05D006944 3.0e-218 761.5 359 99.2
MD15G1249000 Malus domestica HOM05D005603 ORTHO05D006944 1.7e-216 755.7 402 89.1
QL06p033966 Quercus lobata HOM05D005603 ORTHO05D006944 7.7e-214 746.9 402 88.1
MD02G1111100 Malus domestica HOM05D005603 ORTHO05D006944 7.2e-212 740.3 402 87.3
Eucgr.I02369 Eucalyptus grandis HOM05D005603 ORTHO05D006944 3.6e-211 738.0 403 86.1
CiPaw.07G056000 Carya illinoinensis HOM05D005603 ORTHO05D006944 4.7e-211 737.6 404 86.9
COL.COLO4_21962 Corchorus olitorius HOM05D005603 ORTHO05D006944 6.8e-210 733.8 403 87.3
CSS0040106 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 1.5e-209 732.6 404 86.9
TAR628G0819 Trochodendron aralioides HOM05D005603 ORTHO05D006944 2.0e-209 732.3 402 86.1
Gohir.D03G010900 Gossypium hirsutum HOM05D005603 ORTHO05D006944 1.1e-207 726.5 403 86.1
Gorai.003G011300 Gossypium raimondii HOM05D005603 ORTHO05D006944 1.1e-207 726.5 403 86.1
Gohir.A02G169100 Gossypium hirsutum HOM05D005603 ORTHO05D006944 1.8e-207 725.7 403 86.1
Glyma.01G168600 Glycine max HOM05D005603 ORTHO05D006944 3.5e-206 721.5 405 84.9
Manes.02G101300 Manihot esculenta HOM05D005603 ORTHO05D006944 3.5e-206 721.5 401 87.0
Aqoxy5G01490 Aquilegia oxysepala HOM05D005603 ORTHO05D006944 7.7e-206 720.3 401 85.0
CANSAT01G2298 Cannabis sativa HOM05D005603 ORTHO05D006944 7.7e-206 720.3 400 85.5
Ca_24898_v3 Cicer arietinum L. HOM05D005603 ORTHO05D006944 1.0e-205 719.9 405 84.2
TPR.G2333 Trifolium pratense HOM05D005603 ORTHO05D006944 1.0e-205 719.9 405 84.0
Thecc.01G023100 Theobroma cacao HOM05D005603 ORTHO05D006944 1.7e-205 719.2 403 85.4
Psat2g155920 Pisum sativum HOM05D005603 ORTHO05D006944 2.3e-205 718.8 405 84.2
Phvul.002G111500 Phaseolus vulgaris HOM05D005603 ORTHO05D006944 3.8e-205 718.0 405 84.2
Sc03g0003440 Simmondsia chinensis HOM05D005603 ORTHO05D006944 3.8e-205 718.0 403 83.4
VMungo1215G2039 Vigna mungo HOM05D005603 ORTHO05D006944 3.8e-205 718.0 404 84.4
arahy.Tifrunner.gnm1.ann1.V913IW Arachis hypogaea HOM05D005603 ORTHO05D006944 5.0e-205 717.6 405 84.9
TWI09G0997 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 5.0e-205 717.6 402 85.1
Glyma.11G074800 Glycine max HOM05D005603 ORTHO05D006944 6.6e-205 717.2 405 84.2
TAR376G0194 Trochodendron aralioides HOM05D005603 ORTHO05D006944 1.9e-204 715.7 403 84.1
MELO3C007885.2 Cucumis melo HOM05D005603 ORTHO05D006944 3.3e-204 714.9 403 84.6
CsaV3_6G046890 Cucumis sativus L. HOM05D005603 ORTHO05D006944 3.3e-204 714.9 403 84.9
Hma1.2p1_0743F.1_g211450 Hydrangea macrophylla HOM05D005603 ORTHO05D006944 3.3e-204 714.9 415 84.1
Medtr5g021520 Medicago truncatula HOM05D005603 ORTHO05D006944 4.2e-204 714.5 406 83.7
SGA_v2.0_scaffold47G17673 Striga asiatica HOM05D005603 ORTHO05D006944 5.5e-204 714.1 409 83.6
GSVIVG01018824001 Vitis vinifera HOM05D005603 ORTHO05D006944 3.6e-203 711.4 390 86.2
HanXRQChr16g0531111 Helianthus annuus HOM05D005603 ORTHO05D006944 4.7e-203 711.1 402 83.6
Nn5g29214 Nelumbo nucifera HOM05D005603 ORTHO05D006944 4.7e-203 711.1 403 83.9
ClCG01G020120 Citrullus lanatus HOM05D005603 ORTHO05D006944 8.0e-203 710.3 402 84.8
Ciclev10025760m.g Citrus clementina HOM05D005603 ORTHO05D006944 8.0e-203 710.3 401 82.8
Nitab4.5_0008176g0030 Nicotiana tabacum HOM05D005603 ORTHO05D006944 3.0e-202 708.4 418 81.3
Sopen02g029190 Solanum pennellii HOM05D005603 ORTHO05D006944 6.8e-202 707.2 403 83.6
Potri.005G117200 Populus trichocarpa HOM05D005603 ORTHO05D006944 1.5e-201 706.1 401 84.5
THA.LOC104819186 Tarenaya hassleriana HOM05D005603 ORTHO05D006944 1.5e-201 706.1 402 84.1
MSTRG.15764 Avicennia marina HOM05D005603 ORTHO05D006944 2.0e-201 705.7 402 82.6
arahy.Tifrunner.gnm1.ann1.8YZ064 Arachis hypogaea HOM05D005603 ORTHO05D006944 5.7e-201 704.1 434 79.3
Lj2g0023828 Lotus japonicus HOM05D005603 ORTHO05D006944 9.8e-201 703.4 410 83.2
Sed0002868 Sechium edule HOM05D005603 ORTHO05D006944 9.8e-201 703.4 402 84.3
AUR62007651 Chenopodium quinoa HOM05D005603 ORTHO05D006944 1.3e-200 703.0 401 81.8
DCAR_021493 Daucus carota HOM05D005603 ORTHO05D006944 1.3e-200 703.0 404 82.7
Duzib147G0771 Durio zibethinus HOM05D005603 ORTHO05D006944 1.1e-199 699.9 390 85.9
Cc07_g10420 Coffea canephora HOM05D005603 ORTHO05D006944 4.1e-199 698.0 391 84.9
Hund14030 Selenicereus undatus HOM05D005603 ORTHO05D006944 9.2e-199 696.8 401 81.0
Oeu035330.1 Olea europaea HOM05D005603 ORTHO05D006944 3.5e-198 694.9 403 81.9
Migut.L00039 Erythranthe guttata HOM05D005603 ORTHO05D006944 4.5e-198 694.5 403 82.1
Potri.007G015800 Populus trichocarpa HOM05D005603 ORTHO05D006944 4.5e-198 694.5 402 82.8
AT3G51130 Arabidopsis thaliana HOM05D005603 ORTHO05D006944 7.8e-198 693.7 403 80.9
Cpa.g.sc6.214 Carica papaya HOM05D005603 ORTHO05D006944 2.3e-197 692.2 404 82.7
Haze_03808 Corylus avellana HOM05D005603 ORTHO05D006944 5.0e-197 691.0 401 82.3
ATR0620G128 Amborella trichopoda HOM05D005603 ORTHO05D006944 6.6e-197 690.6 403 80.1
PSO541G2355 Papaver somniferum HOM05D005603 ORTHO05D006944 6.6e-197 690.6 403 81.1
PSO675G2068 Papaver somniferum HOM05D005603 ORTHO05D006944 6.6e-197 690.6 403 81.1
Aa31LG4G19220 Aethionema arabicum HOM05D005603 ORTHO05D006944 8.6e-197 690.3 403 81.4
ECA246G4842 Erigeron canadensis HOM05D005603 ORTHO05D006944 1.5e-196 689.5 390 83.6
AL5G31550 Arabidopsis lyrata HOM05D005603 ORTHO05D006944 1.9e-196 689.1 403 80.4
SalBow8G5567 Salvia bowleyana HOM05D005603 ORTHO05D006944 3.3e-196 688.3 414 80.9
Hund16476 Selenicereus undatus HOM05D005603 ORTHO05D006944 3.3e-196 688.3 432 77.3
CDE05G2538 Ceratophyllum demersum HOM05D005603 ORTHO05D006944 5.6e-196 687.6 402 81.1
Carub.0005s1753 Capsella rubella HOM05D005603 ORTHO05D006944 7.3e-196 687.2 403 79.9
Nitab4.5_0000912g0020 Nicotiana tabacum HOM05D005603 ORTHO05D006944 7.3e-196 687.2 410 81.5
Thhalv10010418m.g Eutrema salsugineum HOM05D005603 ORTHO05D006944 1.6e-195 686.0 403 80.1
Lsat_1_v5_gn_3_73720 Lactuca sativa HOM05D005603 ORTHO05D006944 1.6e-195 686.0 395 83.0
Peaxi162Scf00083g01233 Petunia axillaris HOM05D005603 ORTHO05D006944 1.6e-195 686.0 395 82.5
EL10As8g23850 Beta vulgaris HOM05D005603 ORTHO05D006944 2.8e-195 685.3 396 80.8
PGSC0003DMG400003547 Solanum tuberosum HOM05D005603 ORTHO05D006944 8.0e-195 683.7 389 83.0
CSS0042462 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 8.9e-194 680.2 402 81.8
Sed0017160 Sechium edule HOM05D005603 ORTHO05D006944 2.6e-193 678.7 405 81.2
CSS0001882 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 9.8e-193 676.8 402 81.3
Rhsim08G0035200 Rhododendron simsii HOM05D005603 ORTHO05D006944 8.3e-192 673.7 415 78.8
Sp5g11080 Schrenkiella parvula HOM05D005603 ORTHO05D006944 1.4e-191 672.9 403 79.2
BcaC06g33053 Brassica carinata HOM05D005603 ORTHO05D006944 2.4e-191 672.2 402 79.6
CARHR160730 Cardamine hirsuta HOM05D005603 ORTHO05D006944 1.9e-188 662.5 403 77.2
Os06g0714000 Oryza sativa ssp. japonica HOM05D005603 ORTHO05D006944 5.6e-188 661.0 399 78.7
CAN.G358.2 Capsicum annuum HOM05D005603 ORTHO05D006944 2.8e-187 658.7 391 79.3
A03p48150 Brassica napus HOM05D005603 ORTHO05D006944 8.0e-187 657.1 386 79.8
BraA03t13922Z Brassica rapa HOM05D005603 ORTHO05D006944 8.0e-187 657.1 386 79.8
BolC7t45134H Brassica oleracea HOM05D005603 ORTHO05D006944 1.3e-184 649.8 388 79.4
TWI53G1238 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 1.1e-183 646.7 364 84.3
HPP92_025419 Vanilla planifolia HOM05D005603 ORTHO05D006944 1.6e-182 642.9 400 77.5
C07p46180 Brassica napus HOM05D005603 ORTHO05D006944 3.0e-181 638.6 409 75.1
MSTRG.3829 Avicennia marina HOM05D005603 ORTHO05D006944 2.8e-179 632.1 403 75.4
Lj4C215G4 Lonicera japonica HOM05D005603 ORTHO05D006944 3.1e-178 628.6 403 76.4
unitig_32.g11821 Utricularia gibba HOM05D005603 ORTHO05D006944 6.8e-178 627.5 385 77.1
Duzib264G0505 Durio zibethinus HOM05D005603 ORTHO05D006944 3.4e-177 625.2 403 76.9
Sabra05G0096200 Salix brachista HOM05D005603 ORTHO05D006944 2.9e-176 622.1 410 76.8
vmacro22086 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 4.1e-175 618.2 357 81.0
BraA09t39879Z Brassica rapa HOM05D005603 ORTHO05D006944 5.4e-175 617.8 387 75.2
BolC8t50258H Brassica oleracea HOM05D005603 ORTHO05D006944 7.1e-175 617.5 387 74.9
A09p44190 Brassica napus HOM05D005603 ORTHO05D006944 1.2e-174 616.7 387 74.9
Sabra07G0013000 Salix brachista HOM05D005603 ORTHO05D006944 1.1e-172 610.1 402 74.6
BcaB01g00547 Brassica carinata HOM05D005603 ORTHO05D006944 1.2e-171 606.7 375 75.5
Zm00001eb227930 Zea mays HOM05D005603 ORTHO05D006944 1.7e-168 596.3 399 72.9
vmacro18394 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 1.1e-164 583.6 341 80.4
C08p26410 Brassica napus HOM05D005603 ORTHO05D006944 5.3e-162 574.7 356 75.6
Lalb_Chr16g0377611 Lupinus albus HOM05D005603 ORTHO05D006944 1.3e-160 570.1 325 81.2
AagrBONN_evm.TU.Sc2ySwM_228.543 Anthoceros agrestis HOM05D005603 ORTHO05D006944 3.3e-156 555.4 398 67.6
Ah.02g124640 Amaranthus hybridus HOM05D005603 ORTHO05D006944 4.8e-155 551.6 395 69.4
Pp3c2_6370 Physcomitrium patens HOM05D005603 ORTHO05D006944 5.3e-154 548.1 393 65.6
Dinv40059 Davidia involucrata HOM05D005603 ORTHO05D006944 7.6e-153 544.3 305 85.6
Pp3c10_8990 Physcomitrium patens HOM05D005603 ORTHO05D006944 9.9e-153 543.9 395 64.8
SMO117G0153 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 2.9e-152 542.3 394 65.2
Dinv33602 Davidia involucrata HOM05D005603 ORTHO05D006944 4.6e-150 535.0 306 84.3
Actinidia31012 Actinidia chinensis HOM05D005603 ORTHO05D006944 1.6e-142 510.0 306 80.7
Mapoly0152s0028 Marchantia polymorpha HOM05D005603 ORTHO05D006944 4.6e-142 508.4 400 62.2
SEGI_22640 Sequoiadendron giganteum HOM05D005603 ORTHO05D006944 2.5e-140 502.7 345 69.9
Mapoly0094s0075 Marchantia polymorpha HOM05D005603 ORTHO05D006944 1.7e-136 490.0 393 60.1
Lalb_Chr09g0321921 Lupinus albus HOM05D005603 ORTHO05D006944 4.5e-113 412.1 242 82.2
SMO037G0002 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 1.8e-93 347.1 266 62.0
Migut.H02480 Erythranthe guttata HOM05D005603 ORTHO05D006944 2.8e-91 339.7 350 54.9
Solyc02g075630.3 Solanum lycopersicum HOM05D005603 ORTHO05D006944 4.5e-89 332.4 208 77.4
Atru.chr3.766 Acer truncatum HOM05D005603 ORTHO05D006944 2.0e-84 317.0 164 87.2
Actinidia26078 Actinidia chinensis HOM05D005603 ORTHO05D006944 7.5e-84 315.1 219 74.4
Lalb_Chr09g0321931 Lupinus albus HOM05D005603 ORTHO05D006944 2.4e-82 310.1 161 87.0
Nn015s41468 Nelumbo nucifera HOM05D005603 ORTHO05D006944 1.5e-71 274.2 171 76.6
CBR_g36682 Chara braunii HOM05D005603 ORTHO05D000002 1.6e-70 270.8 203 63.1
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 1.3e-67 261.2 433 36.0
BcaC06g33054 Brassica carinata HOM05D005603 ORTHO05D006944 2.8e-62 243.4 144 78.5
CBR_g36680 Chara braunii HOM05D005603 ORTHO05D006944 2.9e-59 233.4 172 62.8
Nn015s41469 Nelumbo nucifera HOM05D005603 ORTHO05D006944 2.7e-57 226.9 130 81.5
Atru.chr2.40 Acer truncatum HOM05D005603 ORTHO05D006944 4.3e-47 193.0 189 55.6
Actinidia31013 Actinidia chinensis HOM05D005603 ORTHO05D006944 5.1e-32 142.9 72 91.7
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 1.9e-31 141.0 182 49.5
Cfa027245 Carpinus fangiana HOM05D005603 ORTHO05D006944 1.3e-14 85.1 269 29.0
COL.COLO4_32114 Corchorus olitorius HOM05D000931 ORTHO05D002226 8.8e-08 62.4 51 60.8


User provided reference genes

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