Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.8e-170 602.4 299 100.0
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 4.1e-162 574.7 299 96.3
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.6e-158 562.8 334 87.4
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 3.6e-158 561.6 333 86.5
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 7.0e-154 547.4 298 90.6
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 4.6e-129 464.9 298 77.9
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 2.3e-128 462.6 298 77.9
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 4.9e-115 418.3 297 70.7
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 1.9e-114 416.4 324 67.6
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 2.4e-114 416.0 297 69.0
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 5.4e-114 414.8 297 71.4
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 7.9e-113 411.0 293 70.6
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 8.7e-112 407.5 296 68.2
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 1.5e-111 406.8 297 71.0
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 1.9e-111 406.4 295 69.5
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.3e-111 405.2 297 68.7
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 8.1e-110 401.0 297 68.0
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 1.1e-109 400.6 298 69.1
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 4.0e-109 398.7 297 67.3
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.3e-109 398.3 297 67.3
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 5.3e-109 398.3 290 67.9
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 1.5e-108 396.7 354 62.1
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 2.6e-108 396.0 295 69.8
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 4.5e-108 395.2 290 69.3
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 1.3e-107 393.7 293 66.6
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 1.3e-107 393.7 290 69.0
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 1.7e-107 393.3 335 62.7
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 8.4e-107 391.0 292 69.9
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 8.4e-107 391.0 295 68.1
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 4.2e-106 388.7 295 67.1
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 5.5e-106 388.3 294 68.0
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 7.1e-106 387.9 293 66.6
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 2.1e-105 386.3 290 65.9
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 2.7e-105 386.0 290 66.6
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 6.0e-105 384.8 302 65.6
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 6.7e-104 381.3 293 65.9
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 1.1e-103 380.6 304 65.8
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 1.1e-103 380.6 296 65.2
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 1.9e-103 379.8 280 67.5
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 4.3e-103 378.6 295 66.4
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 7.4e-103 377.9 290 67.6
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 9.6e-103 377.5 296 63.5
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 1.3e-102 377.1 302 64.6
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 1.6e-102 376.7 295 64.4
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 8.2e-102 374.4 290 66.6
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 1.1e-101 374.0 297 65.3
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 1.1e-101 374.0 290 66.2
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 2.4e-101 372.9 294 64.3
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 2.4e-101 372.9 297 64.6
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 6.9e-101 371.3 297 64.6
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 9.0e-101 370.9 295 64.1
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 1.2e-100 370.5 297 64.6
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 1.5e-100 370.2 294 63.9
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 1.5e-100 370.2 294 64.6
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 2.6e-100 369.4 295 65.1
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 3.4e-100 369.0 297 63.3
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 5.8e-100 368.2 297 64.3
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 5.8e-100 368.2 292 65.4
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 5.8e-100 368.2 295 64.1
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 7.6e-100 367.9 295 63.1
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 2.9e-99 365.9 297 64.0
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 2.9e-99 365.9 292 62.0
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 4.9e-99 365.2 294 65.0
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 1.4e-98 363.6 316 60.1
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 1.4e-98 363.6 293 62.5
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 1.9e-98 363.2 295 64.4
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 2.5e-98 362.8 315 60.3
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 2.5e-98 362.8 295 65.1
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 3.2e-98 362.5 294 62.9
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 7.1e-98 361.3 292 65.1
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 2.1e-97 359.8 290 63.1
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 6.0e-97 358.2 317 60.6
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 5.1e-96 355.1 285 66.3
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 4.3e-95 352.1 295 62.0
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 2.2e-94 349.7 294 62.6
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 3.7e-94 349.0 302 61.3
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 6.3e-94 348.2 297 60.9
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 5.3e-93 345.1 293 60.8
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 5.3e-93 345.1 295 59.0
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 6.9e-93 344.7 271 66.1
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 1.4e-90 337.0 280 62.1
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 5.5e-90 335.1 295 59.3
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 3.6e-89 332.4 247 68.0
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 5.1e-88 328.6 258 64.0
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 2.8e-86 322.8 295 58.0
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 4.8e-86 322.0 299 55.9
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 3.1e-85 319.3 228 69.3
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 1.3e-83 313.9 294 58.5
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 3.8e-83 312.4 383 47.8
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 1.6e-81 307.0 295 57.3
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 2.7e-81 306.2 289 55.7
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 2.0e-79 300.1 245 64.5
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 2.5e-74 283.1 250 57.6
MSTRG.3529 Avicennia marina HOM05D002536 ORTHO05D006290 9.4e-74 281.2 230 62.6
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 4.7e-73 278.9 285 56.5
QL11p004257 Quercus lobata HOM05D002536 ORTHO05D006290 7.7e-68 261.5 189 70.4
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 1.1e-66 257.7 295 47.8
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 9.4e-66 254.6 298 44.6
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 4.7e-65 252.3 259 52.5
Solyc02g091330.4 Solanum lycopersicum HOM05D002536 ORTHO05D006290 4.4e-63 245.7 183 67.2
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 7.5e-63 245.0 317 41.6
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 1.8e-61 240.4 303 43.9
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 5.9e-60 235.3 174 66.7
Cpa.g.sc116.20 Carica papaya HOM05D002536 ORTHO05D006290 3.6e-49 199.5 147 66.7
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 2.6e-47 193.4 375 35.2
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 5.7e-47 192.2 305 38.0
QL11p004418 Quercus lobata HOM05D002536 ORTHO05D006290 5.0e-43 179.1 135 69.6
Cpa.g.sc116.21 Carica papaya HOM05D002536 ORTHO05D006290 2.3e-35 153.7 122 62.3
QL11p004025 Quercus lobata HOM05D002536 ORTHO05D006290 2.3e-32 143.7 114 69.3
TPR.G18743 Trifolium pratense HOM05D002536 ORTHO05D006290 2.6e-31 140.2 171 46.8
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.7e-30 136.3 122 60.7
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.9e-29 134.0 122 59.8
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.9e-29 134.0 122 59.8
Gohir.A12G000900 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.9e-29 134.0 122 59.8
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.4e-29 133.7 122 59.0
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.4e-29 132.5 122 59.0
Gohir.D04G118901 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.5e-28 129.8 91 70.3
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.0e-27 128.3 91 69.2
Gohir.D02G126132 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.3e-26 123.2 91 65.9
TPR.G4379 Trifolium pratense HOM05D002536 ORTHO05D006290 1.4e-24 117.9 111 52.3
TPR.G3477 Trifolium pratense HOM05D002536 ORTHO05D006290 6.8e-24 115.5 248 35.5
Gorai.010G146900 Gossypium raimondii HOM05D002536 ORTHO05D006290 5.8e-23 112.5 83 69.9
QL11p004209 Quercus lobata HOM05D002536 ORTHO05D006290 7.5e-23 112.1 114 57.9
Gohir.D06G126066 Gossypium hirsutum HOM05D002536 ORTHO05D006290 9.9e-23 111.7 73 76.7
Gohir.D03G005233 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.4e-21 107.1 71 69.0
Gorai.007G247100 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.4e-21 107.1 71 69.0
Gorai.012G115800 Gossypium raimondii HOM05D002536 ORTHO05D006290 4.1e-21 106.3 71 69.0
Cre05.g244750 Chlamydomonas reinhardtii HOM05D002536 ORTHO05D006290 1.7e-19 100.9 416 24.3
Gorai.003G061900 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.1e-18 98.2 71 66.2
TPR.G3463 Trifolium pratense HOM05D002536 ORTHO05D006290 1.1e-18 98.2 126 45.2
Gohir.D10G126550 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.6e-18 95.9 71 62.0
TPR.G22657 Trifolium pratense HOM05D002536 ORTHO05D006290 2.4e-16 90.5 54 75.9
TPR.G5666 Trifolium pratense HOM05D002536 ORTHO05D006290 2.6e-15 87.0 66 63.6
TPR.G3492 Trifolium pratense HOM05D002536 ORTHO05D006290 5.4e-13 79.3 66 57.6
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 6.0e-12 75.9 91 47.3
ClCG05G010860 Citrullus lanatus HOM05D002536 ORTHO05D006290 4.8e-09 66.2 46 65.2
TPR.G25728 Trifolium pratense HOM05D002536 ORTHO05D006290 4.8e-09 66.2 57 52.6
TPR.G15212 Trifolium pratense HOM05D002536 ORTHO05D006290 4.0e-08 63.2 43 62.8


User provided reference genes

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