Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.9e-122 442.6 228 100.0
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 2.5e-74 282.7 179 84.9
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 2.7e-73 279.3 190 80.5
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 7.2e-66 254.6 238 66.8
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 5.7e-63 245.0 239 65.3
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.3e-59 233.8 239 64.0
FAN23G0109 Fragaria x ananassa HOM05D005527 ORTHO05D006480 4.8e-54 215.3 128 90.6
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.0e-48 196.1 276 52.9
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 1.4e-45 187.2 241 49.8
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.7e-44 183.0 195 63.1
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.5e-44 182.6 195 63.1
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 2.1e-41 173.3 236 49.6
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 1.1e-37 161.0 241 46.9
FvH4_1g24250 Fragaria vesca HOM05D017060 ORTHO05D046490 2.3e-35 153.3 110 76.4
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 2.8e-25 119.8 243 36.6
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 6.1e-25 118.6 243 36.6
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 2.9e-22 109.8 209 41.6
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 1.1e-21 107.8 201 40.3
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 1.4e-21 107.5 254 38.6
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 2.4e-21 106.7 196 41.8
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 5.4e-21 105.5 211 39.8
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 5.4e-21 105.5 219 38.4
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 9.2e-21 104.8 208 43.3
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 3.5e-20 102.8 199 39.7
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 3.5e-20 102.8 184 44.6
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 3.5e-20 102.8 196 37.8
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 6.0e-20 102.1 200 41.0
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 7.8e-20 101.7 193 39.9
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 1.3e-19 100.9 203 37.4
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 1.7e-19 100.5 193 44.0
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 2.3e-19 100.1 181 40.3
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 3.9e-19 99.4 175 40.0
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 6.6e-19 98.6 199 38.7
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 4.3e-18 95.9 195 38.5
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 5.6e-18 95.5 207 39.6
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 9.5e-18 94.7 198 38.9
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 1.2e-17 94.4 211 36.5
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 1.6e-17 94.0 206 37.4
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 1.6e-17 94.0 174 39.7
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 4.7e-17 92.4 233 35.6
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 1.1e-16 91.3 125 49.6
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 1.4e-16 90.9 194 37.6
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 1.4e-16 90.9 168 41.1
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 1.4e-16 90.9 197 36.5
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.8e-16 90.5 199 37.2
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 1.8e-16 90.5 228 32.0
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 2.3e-16 90.1 130 50.0
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 4.0e-16 89.4 138 43.5
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 8.9e-16 88.2 161 42.9
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 8.9e-16 88.2 233 35.2
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 1.5e-15 87.4 196 36.2
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 1.5e-15 87.4 133 45.9
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 1.5e-15 87.4 206 36.4
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 1.5e-15 87.4 222 34.2
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 2.0e-15 87.0 151 44.4
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 2.6e-15 86.7 158 43.7
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 3.4e-15 86.3 180 38.3
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 4.4e-15 85.9 167 40.7
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 4.4e-15 85.9 190 38.9
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 4.4e-15 85.9 201 36.8
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 4.4e-15 85.9 112 49.1
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 5.8e-15 85.5 146 43.2
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 5.8e-15 85.5 165 39.4
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 5.8e-15 85.5 192 38.0
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 5.8e-15 85.5 131 45.0
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 7.5e-15 85.1 122 45.1
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 7.5e-15 85.1 196 35.7
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 7.5e-15 85.1 192 38.0
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 7.5e-15 85.1 134 43.3
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 9.8e-15 84.7 161 42.9
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 2.2e-14 83.6 175 35.4
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 2.2e-14 83.6 128 47.7
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 2.2e-14 83.6 136 42.6
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 2.2e-14 83.6 132 44.7
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 2.2e-14 83.6 192 37.0
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 2.9e-14 83.2 136 39.7
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 2.9e-14 83.2 141 44.0
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 3.7e-14 82.8 174 33.9
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 3.7e-14 82.8 180 35.6
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 3.7e-14 82.8 222 32.9
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 4.9e-14 82.4 160 43.1
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 4.9e-14 82.4 192 36.5
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 6.4e-14 82.0 177 37.9
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 6.4e-14 82.0 129 43.4
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 1.1e-13 81.3 134 46.3
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 1.1e-13 81.3 134 46.3
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.4e-13 80.9 180 35.6
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 1.9e-13 80.5 173 33.5
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 3.2e-13 79.7 142 40.8
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 3.2e-13 79.7 133 45.1
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 4.1e-13 79.3 139 41.7
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 5.4e-13 79.0 129 46.5
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 5.4e-13 79.0 224 34.4
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 9.2e-13 78.2 124 45.2
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 1.2e-12 77.8 185 36.2
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 1.2e-12 77.8 129 41.9
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 1.2e-12 77.8 155 41.3
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 1.2e-12 77.8 133 42.1
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 1.2e-12 77.8 124 44.4
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 1.6e-12 77.4 141 46.1
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 2.1e-12 77.0 130 42.3
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 2.1e-12 77.0 131 40.5
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 6.0e-12 75.5 190 34.7
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 7.8e-12 75.1 193 36.3
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 1.0e-11 74.7 191 34.0
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 1.3e-11 74.3 173 37.6
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 2.3e-11 73.6 191 33.5
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 3.0e-11 73.2 166 39.2
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 3.0e-11 73.2 124 41.9
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 3.0e-11 73.2 124 41.9
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 5.1e-11 72.4 113 40.7
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 1.9e-10 70.5 226 29.2
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 1.2e-09 67.8 222 32.0
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 2.1e-09 67.0 112 42.0
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 8.1e-09 65.1 105 44.8
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 1.8e-08 63.9 125 40.8
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 2.3e-08 63.5 264 27.3
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 5.2e-08 62.4 125 40.0
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 6.8e-08 62.0 76 55.3
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 6.8e-08 62.0 76 55.3
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 4.4e-07 59.3 124 39.5
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 1.7e-06 57.4 94 43.6
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 1.7e-06 57.4 121 38.0


User provided reference genes

Program Settings