Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.5e-52 208.4 98 100.0
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 1.4e-37 159.5 75 97.3
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.4e-37 159.5 75 97.3
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 3.3e-36 154.8 75 92.0
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 4.3e-36 154.5 75 94.7
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.7e-35 152.5 75 94.7
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 2.8e-35 151.8 75 90.7
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 6.3e-35 150.6 74 90.5
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 1.8e-34 149.1 69 95.7
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 1.2e-33 146.4 75 89.3
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 2.9e-32 141.7 75 86.7
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 3.9e-29 131.3 72 76.4
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 3.9e-29 131.3 72 76.4
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 3.9e-29 131.3 72 76.4
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 3.9e-29 131.3 70 75.7
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 5.1e-29 131.0 69 81.2
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 8.8e-29 130.2 72 75.0
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 8.8e-29 130.2 70 80.0
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 8.8e-29 130.2 71 76.1
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 1.1e-28 129.8 72 77.8
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 2.0e-28 129.0 70 77.1
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 5.7e-28 127.5 69 76.8
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 7.4e-28 127.1 72 72.2
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 7.4e-28 127.1 77 71.4
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 9.7e-28 126.7 70 72.9
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 9.7e-28 126.7 71 74.6
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 1.3e-27 126.3 72 73.6
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 1.7e-27 125.9 70 77.1
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 2.2e-27 125.6 70 77.1
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 2.2e-27 125.6 72 72.2
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 2.2e-27 125.6 72 72.2
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 2.8e-27 125.2 69 75.4
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 2.8e-27 125.2 70 71.4
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 2.8e-27 125.2 70 74.3
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 4.8e-27 124.4 69 73.9
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 4.8e-27 124.4 69 76.8
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 4.8e-27 124.4 71 70.4
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 4.8e-27 124.4 72 75.0
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 6.3e-27 124.0 72 70.8
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 8.2e-27 123.6 79 68.4
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 8.2e-27 123.6 70 75.7
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 8.2e-27 123.6 69 73.9
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 1.4e-26 122.9 69 72.5
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 1.8e-26 122.5 70 74.3
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 1.8e-26 122.5 68 75.0
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 1.8e-26 122.5 72 72.2
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 1.8e-26 122.5 70 72.9
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 1.8e-26 122.5 69 75.4
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 1.8e-26 122.5 70 72.9
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 1.8e-26 122.5 74 70.3
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 1.8e-26 122.5 72 70.8
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 1.8e-26 122.5 72 70.8
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 2.4e-26 122.1 70 74.3
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 2.4e-26 122.1 68 76.5
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 3.1e-26 121.7 69 75.4
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 3.1e-26 121.7 69 75.4
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 3.1e-26 121.7 69 75.4
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 3.1e-26 121.7 69 75.4
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 4.1e-26 121.3 64 78.1
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 7.0e-26 120.6 69 75.4
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 7.0e-26 120.6 72 69.4
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 9.1e-26 120.2 69 78.3
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 9.1e-26 120.2 67 73.1
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 9.1e-26 120.2 70 70.0
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 1.2e-25 119.8 70 72.9
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 1.5e-25 119.4 71 70.4
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 1.5e-25 119.4 72 69.4
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 1.5e-25 119.4 69 73.9
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 2.0e-25 119.0 69 75.4
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 2.6e-25 118.6 69 73.9
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 2.6e-25 118.6 72 72.2
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 2.6e-25 118.6 76 68.4
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 3.5e-25 118.2 68 75.0
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 3.5e-25 118.2 71 71.8
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 4.5e-25 117.9 75 69.3
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 4.5e-25 117.9 70 68.6
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 4.5e-25 117.9 73 68.5
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 5.9e-25 117.5 72 68.1
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 5.9e-25 117.5 80 65.0
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 5.9e-25 117.5 77 64.9
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 7.7e-25 117.1 72 66.7
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 7.7e-25 117.1 69 72.5
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 1.3e-24 116.3 77 66.2
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.3e-24 116.3 71 67.6
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 1.3e-24 116.3 61 77.0
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.7e-24 115.9 77 63.6
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.7e-24 115.9 75 65.3
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.7e-24 115.9 75 65.3
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.7e-24 115.9 62 77.4
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 2.2e-24 115.5 72 68.1
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 2.9e-24 115.2 56 85.7
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 3.8e-24 114.8 72 68.1
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 3.8e-24 114.8 87 60.9
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 3.8e-24 114.8 73 68.5
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.0e-24 114.4 70 68.6
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 5.0e-24 114.4 62 75.8
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 6.5e-24 114.0 69 68.1
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 8.5e-24 113.6 62 75.8
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 8.5e-24 113.6 72 62.5
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 1.1e-23 113.2 72 69.4
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 1.1e-23 113.2 69 69.6
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.9e-23 112.5 72 65.3
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 2.5e-23 112.1 75 64.0
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 3.2e-23 111.7 78 62.8
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 3.2e-23 111.7 69 69.6
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 3.2e-23 111.7 69 71.0
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 4.2e-23 111.3 69 68.1
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 4.2e-23 111.3 69 68.1
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 5.5e-23 110.9 70 67.1
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 7.2e-23 110.5 78 61.5
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 9.4e-23 110.2 69 69.6
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 1.2e-22 109.8 69 71.0
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 1.2e-22 109.8 56 80.4
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 2.7e-22 108.6 69 65.2
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 3.6e-22 108.2 68 67.6
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 3.6e-22 108.2 69 68.1
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 4.7e-22 107.8 69 66.7
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 4.7e-22 107.8 72 66.7
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 1.8e-21 105.9 69 65.2
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 2.3e-21 105.5 69 68.1
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.3e-21 105.5 72 63.9
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 3.0e-21 105.1 68 66.2
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 3.0e-21 105.1 68 66.2
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 4.0e-21 104.8 74 63.5
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 6.7e-21 104.0 56 75.0
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 2.0e-20 102.4 71 62.0
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 4.4e-20 101.3 60 75.0
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 5.7e-20 100.9 67 59.7
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.7e-20 100.9 74 59.5
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 5.7e-20 100.9 60 73.3
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 5.7e-20 100.9 72 63.9
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 1.3e-19 99.8 108 46.3
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 2.8e-19 98.6 60 63.3
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 3.7e-19 98.2 74 60.8
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 4.8e-19 97.8 61 65.6
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 3.1e-18 95.1 56 71.4
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.6e-17 92.8 65 60.0
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.3e-16 89.7 69 60.9
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 2.2e-16 89.0 60 61.7
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.2e-16 89.0 64 56.2
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 3.8e-16 88.2 51 68.6
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 1.9e-15 85.9 53 69.8
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 7.2e-15 84.0 80 45.0
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 2.1e-14 82.4 46 76.1
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 8.0e-14 80.5 40 82.5
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.6e-12 75.5 46 67.4
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 6.3e-11 70.9 69 49.3
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 1.1e-10 70.1 55 52.7
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.0e-08 63.5 36 72.2
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.0e-08 63.5 36 72.2
FAN19G2898 Fragaria x ananassa HOM05D047727 ORTHO05D205236 1.2e-06 56.6 42 66.7


User provided reference genes

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